Back to Long Tests report for BioC 3.14

This page was generated on 2022-04-09 21:00:03 -0400 (Sat, 09 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4322
riesling1Windows Server 2019 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4108
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4135
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbChebi on machv2


To the developers/maintainers of the biodbChebi package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 5/19HostnameOS / ArchCHECK
biodbChebi 1.0.1  (landing page)
Pierrick Roger
Snapshot Date: 2022-04-09 06:55:01 -0400 (Sat, 09 Apr 2022)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_14
git_last_commit: 35326c0
git_last_commit_date: 2021-10-27 06:00:18 -0400 (Wed, 27 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK  
riesling1Windows Server 2019 Standard / x64  OK  
machv2macOS 10.14.6 Mojave / x86_64  OK  

Summary

Package: biodbChebi
Version: 1.0.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.0.1.tar.gz
StartedAt: 2022-04-09 08:02:36 -0400 (Sat, 09 Apr 2022)
EndedAt: 2022-04-09 08:07:50 -0400 (Sat, 09 Apr 2022)
EllapsedTime: 314.3 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-04-09 08:03:16.806][biodb::testContext] 
biodb.INFO [2022-04-09 08:03:16.816][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:03:16.817][biodb::testContext] Test context - Generic long tests
biodb.INFO [2022-04-09 08:03:16.819][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:03:16.820][biodb::testContext] 
biodb.INFO [2022-04-09 08:03:16.847][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-09 08:03:16.850][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-09 08:03:16.860][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:03:16.861][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-09 08:03:16.863][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-09 08:03:16.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.868][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-09 08:03:16.894][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-09 08:03:16.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.899][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-09 08:03:16.900][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-09 08:03:16.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.905][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-09 08:03:16.906][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-09 08:03:16.908][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-09 08:03:16.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.912][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-09 08:03:16.914][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-09 08:03:16.915][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-09 08:03:16.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.920][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-09 08:03:16.921][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-09 08:03:16.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.926][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-09 08:03:16.927][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-09 08:03:16.928][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-09 08:03:16.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.933][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-09 08:03:16.934][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-09 08:03:16.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.939][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-09 08:03:16.940][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-09 08:03:16.942][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-09 08:03:16.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.946][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:03:16.948][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-09 08:03:16.949][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-09 08:03:16.950][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-09 08:03:16.951][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-09 08:03:16.953][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-09 08:03:16.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.957][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-09 08:03:16.959][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-09 08:03:16.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.964][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-09 08:03:16.965][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-09 08:03:16.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.970][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-09 08:03:16.971][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-09 08:03:16.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.976][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-09 08:03:16.977][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-09 08:03:16.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.982][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-09 08:03:16.983][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-09 08:03:16.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:16.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:16.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:16.988][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:03:16.989][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-09 08:03:16.998][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-09 08:03:16.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.003][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-09 08:03:17.004][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-09 08:03:17.005][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-09 08:03:17.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.013][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-09 08:03:17.061][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.084][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-09 08:03:17.085][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.087][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:03:17.088][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.089][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.091][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.092][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.093][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:03:17.095][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:03:17.096][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.097][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-09 08:03:17.098][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:03:17.100][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.108][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.109][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:03:17.109][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:03:17.109][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:03:17.109][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:03:17.109][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:03:17.110][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:03:17.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.112][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.113][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:03:17.114][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.115][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.116][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.117][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.118][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:03:17.119][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:03:17.120][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.121][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.123][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-09 08:03:17.125][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.126][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:03:17.127][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.128][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:03:17.129][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.130][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.131][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.132][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.133][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:03:17.134][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:03:17.135][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.137][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-09 08:03:17.138][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:03:17.139][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.140][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.141][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:03:17.141][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:03:17.141][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:03:17.141][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:03:17.141][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:03:17.142][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:03:17.143][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.144][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.145][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:03:17.146][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.147][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.148][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.149][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.150][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:03:17.151][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:03:17.152][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.153][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.155][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-09 08:03:17.157][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.158][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-09 08:03:17.160][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.161][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:03:17.162][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.163][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.164][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.165][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.167][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:03:17.168][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:03:17.169][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.170][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-09 08:03:17.171][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:03:17.173][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.174][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.175][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.176][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:03:17.177][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.178][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.179][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:03:17.180][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.181][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.182][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.184][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.185][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:03:17.186][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:03:17.187][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.188][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.189][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-09 08:03:17.191][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.192][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:03:17.193][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.194][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:03:17.195][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.196][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.197][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.199][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.200][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:03:17.201][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:03:17.202][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.203][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-09 08:03:17.204][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:03:17.205][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.206][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.207][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.208][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:03:17.209][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.210][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.211][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:03:17.213][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.213][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.214][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.216][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.217][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:03:17.218][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:03:17.219][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.220][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:03:17.224][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:03:17.225][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.309][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-09 08:03:17.314][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-09 08:03:17.316][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-09 08:03:17.317][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-09 08:03:17.319][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:03:17.320][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-09 08:03:17.322][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-09 08:03:17.324][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-09 08:03:17.325][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-09 08:03:17.327][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-09 08:03:17.328][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:03:17.330][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-09 08:03:17.331][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-09 08:03:17.333][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-09 08:03:17.334][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-09 08:03:17.336][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-09 08:03:17.337][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-09 08:03:17.339][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-09 08:03:17.340][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:03:17.342][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-09 08:03:17.343][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-09 08:03:17.345][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-09 08:03:17.346][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-09 08:03:17.348][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-09 08:03:17.350][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-09 08:03:17.351][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-09 08:03:17.353][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-09 08:03:17.354][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-09 08:03:17.356][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-09 08:03:17.357][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-09 08:03:17.359][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-09 08:03:17.360][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-09 08:03:17.362][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-09 08:03:17.363][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-09 08:03:17.365][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-09 08:03:17.367][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-09 08:03:17.368][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-09 08:03:17.370][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-09 08:03:17.371][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-09 08:03:17.373][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-09 08:03:17.374][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-09 08:03:17.376][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-09 08:03:17.377][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-09 08:03:17.379][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-09 08:03:17.381][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-09 08:03:17.383][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-09 08:03:17.384][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-09 08:03:17.386][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-09 08:03:17.392][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-09 08:03:17.394][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-09 08:03:17.395][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-09 08:03:17.397][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-09 08:03:17.398][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-09 08:03:17.400][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-09 08:03:17.401][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-09 08:03:17.403][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-09 08:03:17.404][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-09 08:03:17.406][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-09 08:03:17.407][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-09 08:03:17.409][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-09 08:03:17.410][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-09 08:03:17.412][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-09 08:03:17.413][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-09 08:03:17.415][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-09 08:03:17.416][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-09 08:03:17.418][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-09 08:03:17.419][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:03:17.421][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:03:17.422][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-09 08:03:17.424][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-09 08:03:17.425][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-09 08:03:17.427][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-09 08:03:17.428][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-09 08:03:17.430][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-09 08:03:17.431][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-09 08:03:17.433][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-09 08:03:17.434][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-09 08:03:17.436][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-09 08:03:17.437][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-09 08:03:17.439][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-09 08:03:17.440][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-09 08:03:17.442][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-09 08:03:17.443][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-09 08:03:17.450][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-09 08:03:17.452][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-09 08:03:17.455][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:03:17.456][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.458][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:03:17.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:17.580][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-09 08:03:17.591][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-09 08:03:17.593][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.594][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.595][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.596][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:03:17.597][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.598][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.599][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.601][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-09 08:03:17.602][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-09 08:03:17.603][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:03:17.604][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.605][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-09 08:03:17.606][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-09 08:03:17.607][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-09 08:03:17.608][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-09 08:03:17.609][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:03:17.609][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:03:17.609][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:03:17.611][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-09 08:03:17.612][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.613][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.614][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:03:17.615][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:03:17.616][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:03:17.617][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:03:17.618][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:17.618][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-09 08:03:17.619][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:03:17.620][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:03:17.621][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-09 08:03:17.622][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-09 08:03:17.622][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-09 08:03:17.629][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:03:17.631][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:03:17.632][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-09 08:03:17.634][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:03:17.636][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:03:17.637][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:03:17.665][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-09 08:03:17.666][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-09 08:03:17.676][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-09 08:03:17.681][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-09 08:03:17.686][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-09 08:03:17.687][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-09 08:03:17.688][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-09 08:03:17.689][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-09 08:03:17.727][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:17.728][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-04-09 08:03:17.729][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:17.730][biodb::testThat] 
biodb.TRACE[2022-04-09 08:03:17.734][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-04-09 08:03:17.746][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:17.750][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:17.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:17.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:17.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:17.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:17.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:17.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:17.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:17.778][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:17.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:17.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.811][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:17.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:17.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.846][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.860][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:17.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:17.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:17.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:17.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:17.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:17.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:17.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:17.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:17.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.919][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:17.920][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:17.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.938][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:17.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:17.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:17.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:17.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.983][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:17.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:17.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.986][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:17.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:17.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:17.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.003][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:18.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:18.135][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-04-09 08:03:18.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:18.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:18.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.211][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:18.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:18.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:18.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:18.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.348][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:18.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:18.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:18.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.408][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:18.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:18.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:18.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:18.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.438][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.540][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.549][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.550][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.579][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.605][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.609][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.611][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.614][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.715][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.728][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.729][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.737][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.757][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:18.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.772][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:18.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:18.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.789][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.791][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:18.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.798][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:18.799][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:18.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:18.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:18.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.830][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2022-04-09 08:03:18.882][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:18.883][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:18.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:18.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:18.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:18.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:18.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:18.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:18.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:18.894][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.932][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:18.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:18.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.955][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:18.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:18.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:18.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:18.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:18.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:18.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:18.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.017][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.032][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.036][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.070][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.072][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.090][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:19.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.094][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:19.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:19.184][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2022-04-09 08:03:19.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:19.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:19.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.258][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:19.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:19.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.262][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:19.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:19.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.361][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.421][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.424][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.454][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.470][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.484][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.514][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.543][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.574][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.590][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.603][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.620][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.629][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.664][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.697][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.726][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.727][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.743][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.752][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.761][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.783][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.798][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:19.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.816][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.818][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:19.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.825][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:19.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:19.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.835][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:19.836][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:19.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.844][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2022-04-09 08:03:19.856][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:19.857][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:19.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:19.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:19.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:19.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:19.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:19.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:19.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:19.868][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:19.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:19.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.888][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.907][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.927][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:19.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:19.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:19.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.989][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:19.994][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.029][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.048][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:20.050][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:20.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.068][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.069][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:20.142][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2022-04-09 08:03:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:20.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:20.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:20.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:20.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:20.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:20.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:20.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.283][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.346][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.437][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:20.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:20.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.488][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:20.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:20.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.497][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:20.498][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:20.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:20.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:20.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.514][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.523][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.527][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.557][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:20.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:20.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:20.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:20.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:20.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:20.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.587][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:20.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:20.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.604][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:20.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:20.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.613][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:20.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:20.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.623][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:20.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:20.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:20.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:20.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:20.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:20.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:20.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:20.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.680][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.682][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:20.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.690][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:20.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:20.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:20.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:20.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:20.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:20.702][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:03:20.708][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:20.709][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-04-09 08:03:20.710][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:20.711][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:03:20.714][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2022-04-09 08:03:20.722][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-09 08:03:20.728][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2022-04-09 08:03:20.730][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2022-04-09 08:03:20.732][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2022-04-09 08:03:20.733][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:20.735][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:20.736][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:20.737][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:20.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:20.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:20.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:20.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:20.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:20.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:20.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:20.751][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2022-04-09 08:03:20.772][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:20.773][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:20.774][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2022-04-09 08:03:21.574][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2022-04-09 08:03:22.249][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:22.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2022-04-09 08:03:22.319][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2022-04-09 08:03:22.362][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2022-04-09 08:03:22.374][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:22.409][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-04-09 08:03:22.411][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:22.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:22.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:22.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:22.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:22.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:22.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:22.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:22.422][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.441][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:22.443][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:22.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.446][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:22.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:22.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.461][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:22.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:22.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:22.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:22.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:22.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:22.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.537][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:22.538][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.542][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:22.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.580][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:22.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:22.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:22.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:22.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.599][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:22.600][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:22.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:22.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:22.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:22.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:22.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:22.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:22.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:22.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:22.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:22.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:22.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:22.689][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.690][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.708][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:22.709][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:22.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:22.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.727][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:22.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:22.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:22.748][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:22.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.750][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:22.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.808][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:22.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:22.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:22.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:22.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.847][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:22.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:22.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:22.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:22.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:22.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:22.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:22.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:22.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:22.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:22.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:22.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:22.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:22.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:22.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:22.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:22.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:22.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:22.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:22.955][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:22.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:22.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.975][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:22.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:22.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:22.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:22.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:22.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:22.998][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:22.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:23.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:23.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:23.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:23.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:23.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:23.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:23.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.036][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:23.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:23.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.056][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:23.057][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:23.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.061][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:23.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.075][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:23.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.078][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.080][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:23.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:23.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:23.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:23.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:23.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.113][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:23.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:23.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:23.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:23.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:23.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:23.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:23.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.152][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:23.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:23.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:23.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:23.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:23.258][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2022-04-09 08:03:23.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:03:23.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:03:23.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:03:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:03:23.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:03:23.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:03:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:03:23.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:03:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:03:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:03:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:03:23.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:03:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:03:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:03:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:03:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:03:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:03:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:03:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:03:23.314][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:23.316][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-04-09 08:03:23.317][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:23.318][biodb::testThat] 
biodb.TRACE[2022-04-09 08:03:23.321][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:23.322][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:23.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.324][ef$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:23.325][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-04-09 08:03:23.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:23.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:23.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:23.371][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-04-09 08:03:23.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-09 08:03:23.415][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:23.434][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-09 08:03:23.435][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:23.438][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-09 08:03:23.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:23.461][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:23.462][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:23.480][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:24.154][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:24.869][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:24.890][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2022-04-09 08:03:24.924][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2022-04-09 08:03:24.936][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-04-09 08:03:24.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:24.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:24.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.956][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:24.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.959][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:03:24.961][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:24.962][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-04-09 08:03:24.963][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:24.964][biodb::testThat] 
biodb.TRACE[2022-04-09 08:03:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:24.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:24.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:24.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:24.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:24.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:24.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:24.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:24.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:25.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:25.076][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:25.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:25.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:25.080][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-04-09 08:03:25.097][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:25.098][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-04-09 08:03:25.099][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:25.100][biodb::testThat] 
biodb.TRACE[2022-04-09 08:03:25.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:25.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:25.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:25.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:25.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:25.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:25.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:25.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:25.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:25.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:25.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:25.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:25.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:25.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:25.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:03:25.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:03:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:03:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:25.240][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:25.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:03:25.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:03:25.248][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:25.249][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-04-09 08:03:25.250][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:25.251][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:25.257][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:25.258][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-04-09 08:03:25.259][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:25.260][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:25.266][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:25.267][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-04-09 08:03:25.268][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:25.269][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:03:25.273][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-04-09 08:03:26.001][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-04-09 08:03:27.068][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:27.069][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-04-09 08:03:27.070][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:27.071][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:03:27.609][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.INFO [2022-04-09 08:03:28.135][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:28.136][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-04-09 08:03:28.137][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:28.139][biodb::testThat] 
biodb.TRACE[2022-04-09 08:03:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:28.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:28.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:28.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:28.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:28.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:28.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:28.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:28.224][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:28.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:28.227][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:28.229][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:28.242][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:28.245][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:28.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:28.248][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:28.249][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-04-09 08:03:28.265][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:03:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:03:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:28.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:28.336][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:28.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:03:28.339][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:28.342][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:03:28.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:28.348][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:28.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:03:28.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:28.353][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:03:28.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:28.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:28.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:28.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:28.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:28.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:28.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:28.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:28.415][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:28.418][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:28.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:03:28.421][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:28.424][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:03:28.454][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:28.457][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:28.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:28.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:28.462][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:28.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:28.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:28.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:28.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:28.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:28.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:28.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:28.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:28.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:28.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:28.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:28.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:28.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:28.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:28.516][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-04-09 08:03:28.576][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:28.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-04-09 08:03:28.580][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:28.581][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:28.582][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:28.583][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:28.584][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:28.585][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:28.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:28.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:28.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:28.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:28.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:28.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:28.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:28.610][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2022-04-09 08:03:28.613][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:28.614][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:28.615][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2022-04-09 08:03:29.113][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2022-04-09 08:03:29.638][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:29.649][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2022-04-09 08:03:29.665][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2022-04-09 08:03:29.680][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2022-04-09 08:03:29.686][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:29.706][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:29.707][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:29.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:29.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:29.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:29.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:29.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:29.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:29.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:29.718][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.740][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:29.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:29.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.745][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:29.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:29.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.750][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:29.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:29.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:29.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:29.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.757][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.759][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:29.760][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:29.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.763][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:29.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:29.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:29.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.772][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:29.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:29.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:29.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.786][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:29.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:29.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.799][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:29.800][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:29.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:29.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:29.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:29.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:29.853][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-04-09 08:03:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:29.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:29.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:29.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:29.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:29.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:29.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:29.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:29.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:29.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:29.896][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-04-09 08:03:29.897][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:29.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-04-09 08:03:29.901][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:29.902][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:29.903][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:29.904][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:29.905][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:29.906][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:29.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:29.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:29.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:29.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:29.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:29.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:29.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:29.917][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2022-04-09 08:03:29.921][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:29.922][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:29.923][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2022-04-09 08:03:30.433][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2022-04-09 08:03:30.942][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:30.952][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2022-04-09 08:03:30.968][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2022-04-09 08:03:30.982][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2022-04-09 08:03:30.988][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:31.009][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:31.011][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:31.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:31.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:31.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:31.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:31.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:31.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:31.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:31.022][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.035][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:31.036][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:31.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.040][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:31.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:31.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:31.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:31.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.048][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:31.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:31.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.054][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:31.055][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:31.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.059][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:31.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:31.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.068][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:31.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:31.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:31.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:31.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.082][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:31.084][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:31.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:31.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.103][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:31.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:31.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:31.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:31.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:31.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:31.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:31.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:31.157][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-04-09 08:03:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:31.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:31.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:31.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:31.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:31.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:31.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:31.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:31.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:31.189][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-04-09 08:03:31.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:31.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-04-09 08:03:31.193][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:31.194][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:31.195][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:31.197][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:31.198][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:31.199][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:31.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:31.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:31.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:31.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:31.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:31.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:31.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:31.210][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2022-04-09 08:03:31.213][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:31.214][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:31.216][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2022-04-09 08:03:31.824][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2022-04-09 08:03:32.330][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:32.341][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2022-04-09 08:03:32.367][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2022-04-09 08:03:32.383][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2022-04-09 08:03:32.389][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:32.411][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:32.412][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:32.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:32.424][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.428][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.438][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:32.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:32.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.443][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:32.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:32.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:32.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:32.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.453][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:32.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:32.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.458][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:32.459][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:32.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.462][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:32.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:32.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.472][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:32.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:32.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.475][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:32.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.486][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:32.487][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:32.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:32.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:32.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:32.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:32.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:32.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.555][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-04-09 08:03:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:32.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:32.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:32.591][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-04-09 08:03:32.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:32.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-04-09 08:03:32.595][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:32.596][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:32.597][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:32.598][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:32.599][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:32.601][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:32.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:32.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:32.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:32.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:32.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:32.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:32.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:32.611][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2022-04-09 08:03:32.614][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:32.615][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:32.617][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2022-04-09 08:03:33.120][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2022-04-09 08:03:33.632][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:33.642][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2022-04-09 08:03:33.657][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2022-04-09 08:03:33.671][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2022-04-09 08:03:33.677][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:33.697][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:33.698][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:33.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:33.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:33.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:33.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:33.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:33.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:33.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:33.709][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.713][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.723][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:33.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:33.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.727][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:33.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:33.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.744][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:33.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:33.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:33.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:33.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:33.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.760][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:33.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:33.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:33.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:33.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:33.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:33.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.797][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:33.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:33.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:33.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:33.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:33.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:33.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:33.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:33.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.823][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:33.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:33.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:33.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:33.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.837][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:33.838][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:33.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.840][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.850][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:33.852][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:33.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:33.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:33.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:33.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:33.913][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-04-09 08:03:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:33.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:33.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:33.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:33.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:33.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:33.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:33.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:33.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:33.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:33.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:33.936][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-04-09 08:03:33.937][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:33.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-04-09 08:03:33.940][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:33.945][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:33.947][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:33.948][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:33.949][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:33.950][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:33.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:33.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:33.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:33.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:33.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:33.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:33.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:33.961][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2022-04-09 08:03:33.964][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:33.965][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:33.967][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2022-04-09 08:03:34.471][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2022-04-09 08:03:34.990][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:35.010][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2022-04-09 08:03:35.026][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2022-04-09 08:03:35.041][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2022-04-09 08:03:35.047][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:35.068][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:35.070][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:35.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:35.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:35.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:35.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:35.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:35.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:35.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:35.081][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.094][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:35.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:35.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.108][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:35.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:35.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:35.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:35.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:35.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:35.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:35.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:35.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:35.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:35.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:35.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:35.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:35.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:35.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:35.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.169][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:35.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:35.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.183][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:35.184][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.196][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:35.197][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:35.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:35.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:35.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.210][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:35.211][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:35.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.224][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:35.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:35.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:35.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:35.287][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-04-09 08:03:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:35.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:35.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:35.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:35.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:35.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:35.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:35.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:35.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:35.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:35.310][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-04-09 08:03:35.311][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:35.312][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-04-09 08:03:35.314][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:35.315][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:35.316][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:35.318][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:35.319][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:35.320][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:35.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:35.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:35.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:35.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:35.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:35.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:35.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:35.331][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2022-04-09 08:03:35.338][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:35.340][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:35.341][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2022-04-09 08:03:35.846][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2022-04-09 08:03:36.363][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:36.373][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2022-04-09 08:03:36.390][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2022-04-09 08:03:36.405][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2022-04-09 08:03:36.410][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:36.431][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:36.432][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:36.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:36.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:36.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:36.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:36.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:36.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:36.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:36.443][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.456][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:36.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:36.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:36.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:36.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.470][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:36.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:36.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:36.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:36.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:36.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.486][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.496][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:36.506][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:36.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:36.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:36.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:36.520][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:36.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.523][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:36.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.528][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.537][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:36.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:36.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.550][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:36.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:36.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.564][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:36.565][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:36.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:36.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.577][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:36.579][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:36.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:36.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:36.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:36.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:36.640][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-04-09 08:03:36.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:36.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:36.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:36.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:36.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:36.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:36.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:36.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:36.663][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-04-09 08:03:36.664][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:36.666][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-04-09 08:03:36.668][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:36.669][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:36.670][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:36.671][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:36.672][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:36.673][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:36.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:36.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:36.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:36.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:36.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:36.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:36.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:36.684][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2022-04-09 08:03:36.688][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:36.689][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:36.690][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2022-04-09 08:03:37.195][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2022-04-09 08:03:37.706][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:37.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2022-04-09 08:03:37.733][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2022-04-09 08:03:37.748][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2022-04-09 08:03:37.754][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:37.774][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:37.775][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:37.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:37.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:37.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:37.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:37.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:37.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:37.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:37.786][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.790][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.800][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:37.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:37.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:37.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:37.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.813][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:37.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:37.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:37.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:37.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:37.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:37.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:37.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:37.840][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:37.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:37.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:37.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:37.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.855][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.857][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:37.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:37.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.861][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:37.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:37.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:37.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:37.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:37.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.891][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:37.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:37.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:37.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:37.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:37.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:37.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:37.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:37.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:37.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:37.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:37.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:37.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:37.980][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-04-09 08:03:37.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:37.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:37.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:37.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:37.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:37.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:37.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:37.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:38.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:38.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:38.003][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-04-09 08:03:38.004][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:38.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-04-09 08:03:38.007][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:38.008][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:38.009][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:38.010][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:38.012][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:38.013][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:38.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:38.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:38.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:38.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:38.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:38.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:38.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:38.024][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2022-04-09 08:03:38.027][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:38.028][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:38.029][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2022-04-09 08:03:38.522][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2022-04-09 08:03:39.032][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:39.043][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2022-04-09 08:03:39.059][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2022-04-09 08:03:39.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2022-04-09 08:03:39.081][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:39.102][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:39.103][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:39.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:39.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:39.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:39.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:39.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:39.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:39.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:39.114][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.128][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:39.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:39.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:39.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.141][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:39.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:39.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:39.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:39.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:39.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:39.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:39.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:39.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.182][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:39.183][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.187][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:39.188][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:39.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:39.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:39.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.214][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:39.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:39.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.235][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:39.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:39.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:39.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:39.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:39.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:39.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:39.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:39.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:39.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:39.312][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-04-09 08:03:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:39.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:39.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:39.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:39.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:39.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:39.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:39.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:39.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:39.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:39.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:39.335][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-04-09 08:03:39.336][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:39.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-04-09 08:03:39.339][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:39.340][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:39.342][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:39.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:39.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:39.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:39.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:39.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:39.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:39.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:39.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:39.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:39.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:39.356][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2022-04-09 08:03:39.360][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:39.361][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:39.362][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2022-04-09 08:03:39.860][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2022-04-09 08:03:40.380][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:40.391][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2022-04-09 08:03:40.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2022-04-09 08:03:40.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2022-04-09 08:03:40.429][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:40.451][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:40.452][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:40.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:40.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:40.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:40.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:40.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:40.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:40.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:40.463][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.477][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:40.479][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:40.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:40.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:40.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.491][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:40.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:40.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:40.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:40.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:40.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:40.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:40.520][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:40.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:40.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:40.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.533][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:40.534][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:40.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.538][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:40.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.542][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:40.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:40.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.565][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:40.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:40.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.579][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:40.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:40.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:40.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:40.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:40.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:40.659][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-04-09 08:03:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:40.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:40.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:40.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:40.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:40.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:40.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:40.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:40.681][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-04-09 08:03:40.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:40.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-04-09 08:03:40.686][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:40.687][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:40.688][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:40.689][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:40.690][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:40.691][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:40.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:40.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:40.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:40.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:40.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:40.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:40.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:40.702][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2022-04-09 08:03:40.705][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:40.707][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:40.708][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2022-04-09 08:03:41.390][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2022-04-09 08:03:41.988][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:41.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2022-04-09 08:03:42.023][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2022-04-09 08:03:42.039][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2022-04-09 08:03:42.045][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:42.065][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:42.066][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:42.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:42.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:42.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:42.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:42.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:42.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:42.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:42.077][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.091][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:42.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:42.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:42.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.104][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:42.105][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:42.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:42.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:42.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:42.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:42.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:42.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:42.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:42.146][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:42.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.149][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:42.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:42.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.154][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:42.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:42.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:42.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:42.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.176][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:42.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:42.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:42.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:42.191][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:42.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.203][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:42.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:42.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:42.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:42.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:42.270][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-04-09 08:03:42.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:42.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:42.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:42.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:42.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:42.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:42.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:42.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:42.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:42.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:42.292][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-04-09 08:03:42.293][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:42.295][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-04-09 08:03:42.297][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:42.298][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:42.299][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:42.300][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:42.301][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:42.302][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:42.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:42.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:42.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:42.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:42.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:42.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:42.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:42.313][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2022-04-09 08:03:42.316][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:42.317][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:42.319][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2022-04-09 08:03:42.794][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2022-04-09 08:03:43.306][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:43.316][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2022-04-09 08:03:43.331][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2022-04-09 08:03:43.349][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2022-04-09 08:03:43.359][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:43.379][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:43.380][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:43.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:43.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:43.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:43.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:43.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:43.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:43.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:43.391][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.405][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:43.406][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:43.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.418][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:43.419][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:43.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.431][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:43.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:43.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:43.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:43.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.441][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:43.442][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:43.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.445][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:43.446][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:43.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:43.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:43.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.472][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:43.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:43.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.486][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:43.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:43.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:43.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:43.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:43.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:43.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:43.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:43.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:43.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:43.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:43.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:43.562][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-04-09 08:03:43.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:43.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:43.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:43.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:43.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:43.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:43.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:43.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:43.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:43.585][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-04-09 08:03:43.586][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:43.588][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-04-09 08:03:43.589][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:43.590][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:43.592][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:43.593][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:43.594][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:43.595][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:43.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:43.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:43.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:43.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:43.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:43.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:43.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:43.606][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2022-04-09 08:03:43.610][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:43.611][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:43.612][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2022-04-09 08:03:44.100][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2022-04-09 08:03:44.582][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:44.593][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2022-04-09 08:03:44.610][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2022-04-09 08:03:44.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2022-04-09 08:03:44.631][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:44.653][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:44.654][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:44.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:44.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:44.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:44.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:44.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:44.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:44.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:44.665][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.687][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:44.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:44.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.691][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:44.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:44.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.700][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:44.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:44.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:44.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:44.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:44.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:44.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:44.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:44.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.722][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:44.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:44.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.727][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:44.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:44.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:44.742][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:44.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:44.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.754][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:44.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:44.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:44.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.768][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:44.770][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:44.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:44.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:44.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:44.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:44.837][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-04-09 08:03:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:44.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:44.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:44.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:44.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:44.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:44.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:44.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:44.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:44.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:44.860][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-04-09 08:03:44.861][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:44.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-04-09 08:03:44.865][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:44.866][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:44.867][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:44.868][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:44.869][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:44.871][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:44.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:44.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:44.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:44.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:44.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:44.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:44.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:44.882][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2022-04-09 08:03:44.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:44.886][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:44.892][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2022-04-09 08:03:45.389][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2022-04-09 08:03:45.902][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:45.912][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2022-04-09 08:03:45.929][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2022-04-09 08:03:45.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2022-04-09 08:03:45.950][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:45.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:45.973][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:45.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:45.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:45.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:45.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:45.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:45.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:45.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:45.984][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.985][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:45.998][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:45.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:46.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.011][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:46.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:46.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.025][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:46.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:46.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:46.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:46.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:46.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.062][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:46.063][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:46.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.066][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:46.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:46.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:46.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:46.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.093][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:46.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:46.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:46.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:46.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:46.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:46.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:46.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.121][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:46.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:46.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:46.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:46.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:46.185][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-04-09 08:03:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:46.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:46.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:46.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:46.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:46.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:46.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:46.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:46.207][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-04-09 08:03:46.209][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:46.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-04-09 08:03:46.212][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:46.213][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:46.214][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:46.215][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:46.217][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:46.218][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:46.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:46.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:46.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:46.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:46.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:46.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:46.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:46.229][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2022-04-09 08:03:46.232][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:46.233][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:46.234][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2022-04-09 08:03:46.731][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2022-04-09 08:03:47.245][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:47.255][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2022-04-09 08:03:47.269][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2022-04-09 08:03:47.283][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2022-04-09 08:03:47.289][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:47.310][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:47.311][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:47.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:47.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:47.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:47.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:47.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:47.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:47.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:47.322][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.335][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:47.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:47.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:47.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.348][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:47.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:47.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:47.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:47.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:47.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:47.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:47.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:47.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:47.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.387][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:47.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:47.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.391][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:47.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.410][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:47.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:47.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:47.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:47.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.423][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:47.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:47.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:47.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.436][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:47.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:47.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:47.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:47.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:47.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:47.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:47.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:47.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:47.509][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-04-09 08:03:47.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:47.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:47.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:47.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:47.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:47.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:47.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:47.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:47.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:47.531][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-04-09 08:03:47.533][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:47.534][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-04-09 08:03:47.536][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:47.537][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:47.538][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:47.539][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:47.540][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:47.541][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:47.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:47.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:47.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:47.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:47.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:47.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:47.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:47.552][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2022-04-09 08:03:47.555][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:47.556][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:47.558][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2022-04-09 08:03:48.038][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2022-04-09 08:03:48.537][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:48.547][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2022-04-09 08:03:48.563][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2022-04-09 08:03:48.578][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2022-04-09 08:03:48.584][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:48.605][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:48.606][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:48.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:48.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:48.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:48.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:48.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:48.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:48.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:48.617][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.631][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:48.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:48.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.644][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:48.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:48.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:48.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:48.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:48.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:48.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.674][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:48.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:48.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.683][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:48.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:48.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.688][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:48.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:48.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:48.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.715][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:48.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:48.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:48.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.732][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:48.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:48.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:48.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:48.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.745][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:48.747][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:48.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:48.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:48.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:48.807][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-04-09 08:03:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:48.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:48.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:48.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:48.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:48.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:48.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:48.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:48.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:48.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:48.830][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-04-09 08:03:48.831][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:48.833][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-04-09 08:03:48.834][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:48.835][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:48.836][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:48.838][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:48.839][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:48.840][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:48.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:48.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:48.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:48.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:48.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:48.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:48.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:48.851][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2022-04-09 08:03:48.854][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:48.855][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:48.857][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2022-04-09 08:03:49.347][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2022-04-09 08:03:49.938][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:49.957][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2022-04-09 08:03:49.973][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2022-04-09 08:03:49.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2022-04-09 08:03:49.995][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:50.015][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:50.017][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:50.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:50.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:50.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:50.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:50.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:50.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:50.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:50.028][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.041][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:50.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:50.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:50.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:50.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.055][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:50.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:50.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:50.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:50.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:50.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:50.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:50.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:50.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.101][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:50.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:50.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:50.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:50.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.128][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:50.129][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:50.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.141][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:50.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:50.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.154][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:50.155][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:50.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:50.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:50.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:50.221][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-04-09 08:03:50.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:50.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:50.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:50.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:50.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:50.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:50.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:50.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:50.243][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-04-09 08:03:50.244][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:50.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-04-09 08:03:50.247][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:50.249][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:50.250][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:50.251][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:50.252][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:50.253][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:50.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:50.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:50.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:50.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:50.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:50.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:50.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:50.264][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2022-04-09 08:03:50.267][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:50.268][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:50.270][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2022-04-09 08:03:50.781][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2022-04-09 08:03:51.525][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:51.535][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2022-04-09 08:03:51.551][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2022-04-09 08:03:51.574][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2022-04-09 08:03:51.580][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:51.600][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:51.601][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:51.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:51.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:51.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:51.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:51.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:51.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:51.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:51.612][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.626][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:51.627][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:51.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.639][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:51.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:51.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:51.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:51.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:51.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:51.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:51.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:51.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:51.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:51.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.679][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:51.680][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:51.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.684][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:51.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:51.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:51.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:51.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:51.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:51.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.711][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:51.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:51.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.724][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:51.725][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:51.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:51.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:51.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:51.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:51.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:51.804][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-04-09 08:03:51.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:51.846][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:51.849][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:51.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:51.852][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:51.854][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:51.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:51.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:51.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:51.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:51.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:51.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:51.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:51.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:51.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:51.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:51.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:51.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:51.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:51.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:51.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:51.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:51.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:51.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:51.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:51.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:51.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:51.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:51.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:51.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:51.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:51.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:51.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:51.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:51.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:51.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:51.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:51.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:51.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:51.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:51.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:52.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:52.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:52.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:52.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:52.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:52.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:52.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:52.410][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:52.413][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:52.415][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:52.416][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:52.880][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:53.360][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:53.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content"
biodb.TRACE[2022-04-09 08:03:53.386][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.request"
biodb.DEBUG[2022-04-09 08:03:53.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:53.397][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:53.398][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:53.400][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:53.881][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:54.371][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:54.381][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content"
biodb.TRACE[2022-04-09 08:03:54.398][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.request"
biodb.DEBUG[2022-04-09 08:03:54.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:54.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:54.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:54.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:54.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:54.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:54.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:54.414][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-04-09 08:03:54.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:54.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-04-09 08:03:54.418][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:54.419][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:54.421][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:54.422][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:54.423][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:54.424][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:54.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:54.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:54.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:54.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:54.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:54.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:54.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:54.435][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2022-04-09 08:03:54.438][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:54.439][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:54.441][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2022-04-09 08:03:54.963][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2022-04-09 08:03:55.464][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:55.473][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2022-04-09 08:03:55.489][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2022-04-09 08:03:55.505][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2022-04-09 08:03:55.511][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:55.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:55.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:55.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:55.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:55.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:55.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:55.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:55.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:55.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:55.553][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.556][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.567][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:55.568][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:55.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:55.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:55.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.580][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:55.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:55.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:55.595][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:55.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:55.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:55.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:55.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:55.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.635][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:55.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:55.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.640][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:55.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.662][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:55.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:55.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:55.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:55.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.676][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:55.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:55.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.690][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:55.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:55.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:55.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:55.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:55.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:55.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:55.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:55.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:55.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:55.758][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-04-09 08:03:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:55.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:55.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:55.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:55.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:55.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:55.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:55.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:55.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:55.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:55.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:55.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:55.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:55.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:55.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:55.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:55.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:55.802][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-04-09 08:03:55.803][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:55.805][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-04-09 08:03:55.807][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:55.808][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:55.809][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:55.810][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:55.811][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:55.812][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:55.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:55.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:55.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:55.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:55.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:55.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:55.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:55.824][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2022-04-09 08:03:55.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:55.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:55.830][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2022-04-09 08:03:56.310][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2022-04-09 08:03:56.801][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:56.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2022-04-09 08:03:56.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2022-04-09 08:03:56.851][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2022-04-09 08:03:56.858][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:03:56.879][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:03:56.881][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:03:56.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:56.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:56.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:56.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:56.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:56.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:56.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:56.892][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.906][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:56.907][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:56.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:03:56.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:03:56.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.919][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:56.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:56.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:03:56.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:03:56.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:56.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:56.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:03:56.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:03:56.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:56.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:56.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:03:56.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:03:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.960][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:56.962][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:03:56.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.965][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:56.966][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:03:56.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:56.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:56.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:56.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:56.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.993][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:56.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:56.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:56.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:03:57.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:03:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.007][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:57.008][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:57.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:03:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:03:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:57.022][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:57.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:03:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:03:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:57.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:57.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:57.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:57.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:57.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:57.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:03:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:03:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.089][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-04-09 08:03:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.132][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:57.135][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:57.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:57.138][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:57.140][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:57.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.733][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:57.736][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:57.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:03:57.739][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:57.740][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:03:57.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:57.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:57.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:57.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:57.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:57.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:57.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:57.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:57.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:57.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:57.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:57.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:03:58.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.203][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:03:58.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:03:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:03:58.214][biodb::testThat] 
biodb.INFO [2022-04-09 08:03:58.215][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-04-09 08:03:58.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:03:58.217][biodb::testThat] 
biodb.TRACE[2022-04-09 08:03:58.220][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:03:58.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:03:58.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.225][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:03:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:03:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.229][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:03:58.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:03:58.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:58.434][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:58.437][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:58.439][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:03:58.440][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:58.441][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:03:58.445][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:58.448][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:58.449][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:03:58.451][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:58.452][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:03:58.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:03:58.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:03:58.476][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:58.479][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:03:58.481][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:03:58.482][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:03:58.483][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:03:58.486][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:03:58.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:03:58.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.505][private$selectFields] 
biodb.TRACE[2022-04-09 08:03:58.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:03:58.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:03:58.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.519][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:03:58.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.524][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:03:58.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:03:58.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:03:58.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:03:58.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:03:58.550][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:03:58.551][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:03:58.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:58.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:58.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:58.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:58.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:58.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:58.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:58.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:03:58.690][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:58.691][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:58.693][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:03:59.239][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:03:59.825][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:03:59.846][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content"
biodb.TRACE[2022-04-09 08:03:59.880][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.request"
biodb.DEBUG[2022-04-09 08:03:59.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:59.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:59.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:59.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:59.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:59.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:59.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:59.901][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2022-04-09 08:03:59.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:03:59.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2022-04-09 08:03:59.906][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:03:59.907][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:03:59.908][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:03:59.909][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:03:59.910][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:03:59.911][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:03:59.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:03:59.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:03:59.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:03:59.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:03:59.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:03:59.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:03:59.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:03:59.922][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2022-04-09 08:03:59.925][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:03:59.927][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:03:59.928][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2022-04-09 08:04:00.432][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2022-04-09 08:04:00.988][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:01.011][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2022-04-09 08:04:01.055][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2022-04-09 08:04:01.086][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2022-04-09 08:04:01.097][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:01.123][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:01.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:01.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:01.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:01.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:01.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:01.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:01.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:01.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:01.136][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.155][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:01.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:01.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:01.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:01.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.174][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:01.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:01.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:01.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:01.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:01.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:01.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:01.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:01.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:01.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.232][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:01.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:01.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.237][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:01.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:01.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:01.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:01.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:01.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.279][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:01.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:01.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:01.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:01.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.298][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:01.299][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:01.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:01.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:01.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:01.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:01.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:01.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:01.391][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2022-04-09 08:04:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:01.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:01.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:01.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:01.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:01.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:01.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:01.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:01.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:01.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:01.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:01.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:01.413][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2022-04-09 08:04:01.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:01.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2022-04-09 08:04:01.418][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:01.419][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:01.420][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:01.421][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:01.422][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:01.423][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:01.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:01.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:01.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:01.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:01.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:01.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:01.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:01.434][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2022-04-09 08:04:01.438][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:01.439][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:01.440][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2022-04-09 08:04:01.954][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2022-04-09 08:04:02.499][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:02.521][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2022-04-09 08:04:02.562][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2022-04-09 08:04:02.595][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2022-04-09 08:04:02.606][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:02.632][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:02.634][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:02.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:02.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:02.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:02.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:02.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:02.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:02.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:02.645][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.664][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:02.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:02.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:02.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:02.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.684][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:02.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:02.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:02.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:02.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:02.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:02.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:02.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:02.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:02.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:02.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:02.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:02.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.746][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:02.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:02.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.750][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.751][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:02.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:02.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:02.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.790][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:02.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:02.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:02.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.811][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:02.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:02.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.830][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:02.832][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:02.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:02.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:02.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:02.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:02.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:02.903][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2022-04-09 08:04:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:02.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:02.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:02.918][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:02.921][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:02.923][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:02.924][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:03.443][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:03.988][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:04.010][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content"
biodb.TRACE[2022-04-09 08:04:04.053][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.request"
biodb.DEBUG[2022-04-09 08:04:04.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:04.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:04.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:04.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:04.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:04.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:04.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:04.075][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2022-04-09 08:04:04.076][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:04.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2022-04-09 08:04:04.079][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:04.080][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:04.082][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:04.083][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:04.084][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:04.085][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:04.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:04.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:04.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:04.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:04.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:04.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:04.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:04.096][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2022-04-09 08:04:04.099][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:04.100][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:04.102][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2022-04-09 08:04:04.610][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2022-04-09 08:04:05.281][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:05.303][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2022-04-09 08:04:05.337][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2022-04-09 08:04:05.368][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2022-04-09 08:04:05.380][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:05.405][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:05.407][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:05.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:05.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:05.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:05.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:05.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:05.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:05.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:05.418][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.437][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:05.438][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:05.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.461][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:05.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:05.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:05.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:05.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:05.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:05.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:05.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:05.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:05.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.520][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:05.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:05.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.524][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.539][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:05.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:05.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.543][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:05.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.577][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:05.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:05.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:05.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:05.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.597][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:05.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:05.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:05.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:05.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.616][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:05.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:05.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:05.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:05.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:05.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:05.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:05.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:05.694][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2022-04-09 08:04:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:05.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:05.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:05.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:05.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:05.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:05.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:05.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:05.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:05.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:05.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:05.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:05.716][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2022-04-09 08:04:05.717][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:05.719][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2022-04-09 08:04:05.720][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:05.722][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:05.723][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:05.724][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:05.725][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:05.726][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:05.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:05.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:05.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:05.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:05.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:05.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:05.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:05.737][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2022-04-09 08:04:05.740][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:05.741][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:05.743][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2022-04-09 08:04:06.247][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2022-04-09 08:04:06.873][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:06.894][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2022-04-09 08:04:06.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2022-04-09 08:04:06.956][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2022-04-09 08:04:06.968][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:06.994][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:06.995][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:06.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:06.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:06.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:07.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:07.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:07.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:07.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:07.006][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.029][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:07.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:07.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.048][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:07.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:07.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:07.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:07.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:07.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:07.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:07.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:07.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.104][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:07.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:07.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.123][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:07.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:07.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:07.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:07.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.161][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:07.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:07.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:07.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:07.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.180][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:07.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:07.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.184][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:07.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.200][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:07.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:07.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:07.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:07.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:07.278][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2022-04-09 08:04:07.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:07.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:07.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:07.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:07.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:07.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:07.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:07.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:07.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:07.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:07.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:07.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:07.300][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2022-04-09 08:04:07.301][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:07.303][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2022-04-09 08:04:07.304][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:07.306][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:07.307][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:07.308][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:07.309][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:07.310][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:07.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:07.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:07.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:07.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:07.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:07.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:07.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:07.321][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2022-04-09 08:04:07.324][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:07.325][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:07.327][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2022-04-09 08:04:07.839][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2022-04-09 08:04:08.393][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:08.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2022-04-09 08:04:08.449][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2022-04-09 08:04:08.481][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2022-04-09 08:04:08.492][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:08.524][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:08.525][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:08.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.536][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.555][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:08.556][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:08.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:08.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:08.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.573][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:08.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:08.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:08.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:08.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:08.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:08.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.595][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.611][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:08.612][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:08.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:08.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:08.631][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:08.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.635][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:08.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.639][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:08.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.672][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:08.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:08.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:08.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:08.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.691][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:08.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:08.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:08.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:08.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:08.715][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:08.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:08.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:08.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:08.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:08.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.787][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2022-04-09 08:04:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:08.829][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:08.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.875][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:08.876][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.889][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.895][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:08.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.933][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:08.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.947][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.952][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:08.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:08.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:08.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:08.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:08.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:08.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:08.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:08.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:08.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.985][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:08.986][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:08.987][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:08.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:08.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:08.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:08.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:08.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:09.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:09.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:09.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:09.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:09.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:09.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:09.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:09.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:09.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:09.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:09.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:09.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:09.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:09.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:09.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:09.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:09.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:09.021][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:09.022][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:09.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:09.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:09.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:09.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:09.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:09.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:09.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:09.164][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:09.167][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:09.168][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:09.170][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:09.682][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:10.238][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:10.260][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content"
biodb.TRACE[2022-04-09 08:04:10.293][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.request"
biodb.DEBUG[2022-04-09 08:04:10.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:10.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:10.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:10.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:10.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:10.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:10.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:10.314][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2022-04-09 08:04:10.315][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:10.317][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2022-04-09 08:04:10.318][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:10.319][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:10.321][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:10.322][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:10.323][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:10.324][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:10.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:10.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:10.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:10.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:10.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:10.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:10.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:10.335][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2022-04-09 08:04:10.338][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:10.339][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:10.340][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2022-04-09 08:04:10.899][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2022-04-09 08:04:11.451][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:11.473][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2022-04-09 08:04:11.507][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2022-04-09 08:04:11.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2022-04-09 08:04:11.557][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:11.583][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:11.584][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:11.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:11.595][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.614][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:11.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:11.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:11.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:11.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.633][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:11.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:11.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:11.653][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:11.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:11.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:11.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:11.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:11.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.690][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:11.692][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:11.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.695][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:11.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.700][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:11.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:11.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.734][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:11.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:11.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:11.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:11.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.758][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:11.759][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:11.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:11.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:11.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:11.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:11.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:11.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:11.851][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2022-04-09 08:04:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:11.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:11.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:11.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:11.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:11.874][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2022-04-09 08:04:11.875][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:11.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2022-04-09 08:04:11.878][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:11.879][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:11.881][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:11.882][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:11.883][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:11.884][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:11.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:11.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:11.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:11.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:11.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:11.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:11.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:11.895][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2022-04-09 08:04:11.898][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:11.899][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:11.901][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2022-04-09 08:04:12.439][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2022-04-09 08:04:12.977][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:12.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2022-04-09 08:04:13.030][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2022-04-09 08:04:13.070][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2022-04-09 08:04:13.081][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:13.107][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:13.108][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:13.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:13.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:13.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:13.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:13.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:13.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:13.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:13.119][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.137][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:13.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:13.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:13.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:13.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.156][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:13.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:13.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:13.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:13.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:13.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:13.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:13.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:13.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:13.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.212][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:13.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:13.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.217][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:13.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:13.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.222][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:13.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:13.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.258][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:13.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:13.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.262][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.277][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:13.279][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:13.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.282][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:13.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:13.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:13.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:13.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:13.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:13.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:13.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:13.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:13.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:13.368][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2022-04-09 08:04:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:13.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:13.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:13.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:13.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:13.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:13.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:13.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:13.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:13.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:13.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:13.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:13.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:13.390][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2022-04-09 08:04:13.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:13.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2022-04-09 08:04:13.395][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:13.396][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:13.397][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:13.398][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:13.399][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:13.400][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:13.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:13.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:13.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:13.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:13.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:13.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:13.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:13.411][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2022-04-09 08:04:13.414][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:13.415][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:13.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2022-04-09 08:04:13.921][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2022-04-09 08:04:14.455][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:14.476][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2022-04-09 08:04:14.516][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2022-04-09 08:04:14.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2022-04-09 08:04:14.559][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:14.585][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:14.586][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:14.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:14.597][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.616][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:14.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:14.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:14.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:14.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.635][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:14.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:14.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:14.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:14.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:14.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:14.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:14.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:14.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.691][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:14.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:14.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.696][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:14.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.701][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:14.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.737][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:14.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:14.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.756][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:14.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:14.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.759][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:14.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:14.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.774][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:14.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:14.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:14.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:14.846][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2022-04-09 08:04:14.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:14.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:14.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:14.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:14.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:14.868][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2022-04-09 08:04:14.869][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:14.871][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2022-04-09 08:04:14.872][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:14.873][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:14.874][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:14.876][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:14.877][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:14.878][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:14.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:14.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:14.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:14.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:14.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:14.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:14.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:14.888][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2022-04-09 08:04:14.891][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:14.893][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:14.894][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2022-04-09 08:04:15.408][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2022-04-09 08:04:15.966][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:15.989][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2022-04-09 08:04:16.032][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2022-04-09 08:04:16.066][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2022-04-09 08:04:16.079][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:16.105][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:16.107][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:16.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:16.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:16.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:16.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:16.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:16.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:16.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:16.118][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.138][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:16.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:16.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.142][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:16.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:16.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.158][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:16.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:16.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:16.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:16.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:16.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:16.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:16.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:16.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:16.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:16.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:16.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:16.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.228][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:16.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:16.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:16.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:16.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:16.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.266][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:16.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:16.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:16.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:16.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.285][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:16.286][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:16.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:16.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:16.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:16.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:16.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:16.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:16.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:16.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:16.376][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2022-04-09 08:04:16.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:16.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:16.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:16.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:16.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:16.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:16.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:16.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:16.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:16.398][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2022-04-09 08:04:16.399][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:16.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2022-04-09 08:04:16.402][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:16.404][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:16.409][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:16.410][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:16.411][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:16.412][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:16.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:16.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:16.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:16.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:16.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:16.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:16.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:16.423][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2022-04-09 08:04:16.426][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:16.427][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:16.428][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2022-04-09 08:04:16.929][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2022-04-09 08:04:17.487][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:17.517][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2022-04-09 08:04:17.549][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2022-04-09 08:04:17.581][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2022-04-09 08:04:17.592][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:17.618][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:17.620][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:17.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:17.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:17.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:17.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:17.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:17.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:17.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:17.631][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.650][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:17.651][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:17.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:17.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.669][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:17.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:17.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:17.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:17.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:17.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:17.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:17.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:17.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:17.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:17.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:17.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:17.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:17.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.734][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:17.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:17.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.739][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.755][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.757][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.773][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:17.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:17.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.793][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:17.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:17.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.798][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:17.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:17.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:17.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:17.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:17.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:17.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:17.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:17.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:17.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:17.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:17.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:17.887][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2022-04-09 08:04:17.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:17.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:17.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:17.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:17.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:17.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:17.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:17.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:17.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:17.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:17.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:17.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:17.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:17.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:17.919][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2022-04-09 08:04:17.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:17.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2022-04-09 08:04:17.923][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:17.924][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:17.925][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:17.926][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:17.927][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:17.929][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:17.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:17.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:17.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:17.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:17.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:17.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:17.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:17.939][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2022-04-09 08:04:17.942][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:17.943][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:17.945][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2022-04-09 08:04:18.555][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2022-04-09 08:04:19.123][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:19.146][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2022-04-09 08:04:19.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2022-04-09 08:04:19.210][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2022-04-09 08:04:19.221][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:19.247][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:19.248][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:19.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:19.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:19.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:19.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:19.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:19.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:19.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:19.259][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.262][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.278][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:19.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:19.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:19.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:19.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.297][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:19.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:19.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:19.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:19.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:19.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:19.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:19.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:19.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:19.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:19.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:19.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.357][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:19.359][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:19.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.362][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:19.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.366][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:19.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:19.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.399][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:19.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:19.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.419][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:19.421][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:19.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:19.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:19.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.442][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:19.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:19.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:19.517][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2022-04-09 08:04:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:19.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:19.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:19.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:19.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:19.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:19.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:19.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:19.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:19.539][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2022-04-09 08:04:19.540][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:19.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2022-04-09 08:04:19.544][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:19.545][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:19.546][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:19.547][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:19.548][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:19.549][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:19.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:19.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:19.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:19.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:19.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:19.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:19.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:19.560][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2022-04-09 08:04:19.563][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:19.564][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:19.566][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2022-04-09 08:04:20.075][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2022-04-09 08:04:20.627][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:20.649][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2022-04-09 08:04:20.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2022-04-09 08:04:20.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2022-04-09 08:04:20.727][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:20.753][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:20.755][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:20.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:20.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:20.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:20.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:20.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:20.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:20.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:20.766][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:20.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:20.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:20.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:20.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.785][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:20.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:20.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:20.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:20.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.808][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:20.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:20.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:20.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:20.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:20.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:20.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:20.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:20.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:20.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:20.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:20.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.864][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:20.865][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:20.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.869][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:20.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:20.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.873][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:20.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.887][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:20.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:20.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.906][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:20.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:20.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:20.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:20.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.926][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:20.927][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:20.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:20.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:20.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:20.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:20.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:20.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:20.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:20.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:20.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:20.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:20.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:20.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:20.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:20.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:20.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:20.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:21.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:21.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:21.022][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2022-04-09 08:04:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:21.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:21.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:21.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:21.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:21.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:21.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:21.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:21.040][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:21.041][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:21.043][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:21.566][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:22.716][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:22.736][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content"
biodb.TRACE[2022-04-09 08:04:22.769][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.request"
biodb.DEBUG[2022-04-09 08:04:22.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:22.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:22.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:22.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:22.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:22.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:22.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:22.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:22.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:22.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:22.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:22.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:22.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:22.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:22.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:22.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:22.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:22.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:22.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:22.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:22.810][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2022-04-09 08:04:22.811][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:22.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2022-04-09 08:04:22.815][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:22.816][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:22.817][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:22.818][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:22.819][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:22.820][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:22.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:22.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:22.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:22.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:22.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:22.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:22.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:22.831][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2022-04-09 08:04:22.834][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:22.835][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:22.836][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2022-04-09 08:04:23.347][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2022-04-09 08:04:23.888][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:23.909][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2022-04-09 08:04:23.942][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2022-04-09 08:04:23.974][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2022-04-09 08:04:23.991][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:24.017][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:24.018][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:24.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:24.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:24.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:24.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:24.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:24.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:24.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:24.029][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.047][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:24.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:24.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:24.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.065][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:24.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:24.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:24.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:24.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:24.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:24.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:24.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:24.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:24.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:24.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:24.123][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:24.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.126][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:24.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.131][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:24.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:24.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.165][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:24.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:24.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:24.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:24.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:24.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:24.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:24.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:24.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.280][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2022-04-09 08:04:24.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:24.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:24.296][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:24.299][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:24.300][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:24.302][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:24.814][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:25.478][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:25.499][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content"
biodb.TRACE[2022-04-09 08:04:25.533][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.request"
biodb.DEBUG[2022-04-09 08:04:25.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:25.557][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2022-04-09 08:04:25.558][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:25.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2022-04-09 08:04:25.561][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:25.562][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:25.563][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:25.565][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:25.566][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:25.567][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:25.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:25.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:25.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:25.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:25.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:25.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:25.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:25.584][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2022-04-09 08:04:25.587][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:25.588][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:25.590][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2022-04-09 08:04:26.109][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2022-04-09 08:04:26.665][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:26.695][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2022-04-09 08:04:26.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2022-04-09 08:04:26.760][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2022-04-09 08:04:26.771][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:26.797][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:26.798][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:26.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:26.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:26.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:26.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:26.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:26.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:26.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:26.809][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:26.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:26.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.828][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:26.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:26.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.847][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:26.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:26.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:26.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:26.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:26.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:26.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:26.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:26.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:26.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:26.912][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:26.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:26.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:26.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.930][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:26.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:26.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:26.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:26.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.969][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:26.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:26.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.989][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:26.990][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:26.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:26.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:26.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:26.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.008][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:27.009][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:27.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:27.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:27.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:27.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:27.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:27.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:27.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:27.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:27.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:27.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:27.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:27.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:27.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:27.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:27.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:27.084][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2022-04-09 08:04:27.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:27.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:27.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:27.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:27.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:27.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:27.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:27.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:27.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:27.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:27.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:27.112][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2022-04-09 08:04:27.113][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:27.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2022-04-09 08:04:27.117][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:27.118][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:27.119][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:27.120][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:27.121][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:27.122][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:27.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:27.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:27.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:27.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:27.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:27.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:27.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:27.133][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2022-04-09 08:04:27.137][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:27.138][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:27.140][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2022-04-09 08:04:27.659][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2022-04-09 08:04:28.211][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:28.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2022-04-09 08:04:28.266][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2022-04-09 08:04:28.298][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2022-04-09 08:04:28.310][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:28.336][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:28.337][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:28.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:28.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:28.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:28.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:28.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:28.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:28.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:28.348][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.367][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:28.368][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:28.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.370][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.371][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:28.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.390][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:28.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:28.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:28.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:28.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:28.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:28.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:28.430][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:28.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.432][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:28.449][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:28.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.467][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:28.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.472][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:28.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.505][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:28.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:28.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:28.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:28.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.525][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:28.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:28.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:28.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:28.546][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:28.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:28.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:28.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:28.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:28.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:28.623][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2022-04-09 08:04:28.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:28.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:28.637][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:28.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:28.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:28.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:28.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:28.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:28.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:28.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:28.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.656][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:28.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:28.658][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:28.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.663][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.674][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.675][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:28.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:04:28.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:28.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:28.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:28.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:28.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:28.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:28.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:28.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.708][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:28.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:28.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:28.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.722][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.727][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:28.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:04:28.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:28.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:28.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:28.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:28.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:28.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:28.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:28.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.761][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:28.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:28.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:28.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.779][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:28.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.783][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.784][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:28.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:28.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:04:28.800][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:28.801][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:28.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:28.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:28.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:28.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:28.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:28.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:28.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:28.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:28.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:28.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:29.071][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:29.074][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:29.075][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:04:29.077][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:29.079][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:04:29.082][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:29.086][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:29.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:04:29.088][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:29.090][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:04:29.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:29.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:29.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:29.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:29.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:29.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:29.165][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:29.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:29.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.185][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:29.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:29.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:29.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.199][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:29.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:04:29.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:29.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.277][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:29.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:29.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:29.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.307][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:29.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.346][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.347][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:29.348][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:29.349][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:29.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.361][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:29.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.367][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:29.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:29.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:04:29.382][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:29.383][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:29.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:29.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:29.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:29.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:29.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:29.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:29.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:29.522][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:29.525][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:29.526][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:29.528][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:30.042][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:30.591][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:30.613][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content"
biodb.TRACE[2022-04-09 08:04:30.653][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.request"
biodb.DEBUG[2022-04-09 08:04:30.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:30.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:30.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:30.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:30.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:30.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:30.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:30.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:30.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:30.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:30.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:30.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:30.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:30.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:30.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:30.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:30.695][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2022-04-09 08:04:30.696][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:30.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2022-04-09 08:04:30.699][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:30.700][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:30.701][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:30.702][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:30.703][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:30.704][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:30.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:30.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:30.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:30.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:30.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:30.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:30.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:30.715][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2022-04-09 08:04:30.718][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:30.719][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:30.721][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2022-04-09 08:04:31.236][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2022-04-09 08:04:31.884][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:31.905][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2022-04-09 08:04:31.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2022-04-09 08:04:31.970][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2022-04-09 08:04:31.982][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:32.010][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:32.011][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:32.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:32.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:32.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:32.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:32.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:32.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:32.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:32.028][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.048][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:32.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:32.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:32.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.067][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:32.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:32.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:32.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:32.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:32.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:32.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:32.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:32.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.126][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:32.127][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:32.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.130][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:32.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:32.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.169][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:32.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:32.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:32.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:32.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.208][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:32.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:32.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:32.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:32.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:32.287][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2022-04-09 08:04:32.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:32.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:32.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:32.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:32.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:32.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:32.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:32.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:32.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:32.309][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2022-04-09 08:04:32.310][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:32.312][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2022-04-09 08:04:32.313][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:32.314][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:32.316][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:32.317][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:32.318][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:32.319][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:32.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:32.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:32.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:32.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:32.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:32.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:32.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:32.330][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2022-04-09 08:04:32.333][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:32.334][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:32.335][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2022-04-09 08:04:32.937][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2022-04-09 08:04:33.486][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:33.507][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2022-04-09 08:04:33.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2022-04-09 08:04:33.571][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2022-04-09 08:04:33.583][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:33.616][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:33.617][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:33.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:33.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:33.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:33.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:33.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:33.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:33.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:33.628][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.647][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:33.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:33.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.665][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:33.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:33.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:33.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:33.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.684][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:33.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:33.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:33.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:33.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:33.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:33.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:33.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.721][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:33.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:33.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.725][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:33.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:33.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.729][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.730][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:33.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:33.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.763][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:33.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:33.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:33.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.782][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:33.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:33.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.805][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:33.807][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:33.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:33.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:33.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:33.878][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2022-04-09 08:04:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:33.892][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:33.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:33.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:33.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:33.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:33.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:33.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:33.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:33.912][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:33.913][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:33.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:33.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:33.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:33.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:33.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.931][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:33.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:33.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:33.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:33.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:33.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:33.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:33.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:33.965][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:33.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:33.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:33.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:33.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:33.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:33.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.984][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:33.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:33.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:04:34.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:34.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:34.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:34.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:34.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:34.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:34.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:34.022][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:34.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:34.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:34.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:34.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:34.036][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:34.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:34.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:34.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:04:34.057][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:34.058][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:34.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:34.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:34.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:34.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:34.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:34.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:34.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:34.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:34.201][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:34.202][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:34.203][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:34.751][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:35.302][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:35.333][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content"
biodb.TRACE[2022-04-09 08:04:35.367][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.request"
biodb.DEBUG[2022-04-09 08:04:35.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:35.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:35.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:35.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:35.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:35.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:35.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:35.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:35.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:35.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:35.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:35.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:35.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:35.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:35.411][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2022-04-09 08:04:35.412][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:35.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2022-04-09 08:04:35.415][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:35.417][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:35.418][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:35.419][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:35.420][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:35.421][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:35.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:35.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:35.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:35.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:35.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:35.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:35.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:35.432][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2022-04-09 08:04:35.435][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:35.436][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:35.438][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2022-04-09 08:04:35.939][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2022-04-09 08:04:36.493][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:36.515][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2022-04-09 08:04:36.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2022-04-09 08:04:36.580][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2022-04-09 08:04:36.592][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:36.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:36.627][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:36.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:36.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:36.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:36.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:36.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:36.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:36.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:36.638][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.657][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:36.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:36.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:36.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.677][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:36.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:36.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:36.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:36.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:36.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:36.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:36.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.736][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:36.737][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:36.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.740][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:36.741][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.778][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:36.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:36.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.797][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:36.798][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:36.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:36.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:36.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:36.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:36.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:36.894][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2022-04-09 08:04:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:36.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:36.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:36.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:36.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:36.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:36.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:36.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:36.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:36.916][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2022-04-09 08:04:36.917][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:36.919][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2022-04-09 08:04:36.920][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:36.921][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:36.923][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:36.924][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:36.925][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:36.926][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:36.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:36.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:36.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:36.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:36.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:36.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:36.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:36.937][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2022-04-09 08:04:36.940][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:36.941][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:36.942][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2022-04-09 08:04:37.465][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2022-04-09 08:04:38.018][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:38.039][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2022-04-09 08:04:38.073][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2022-04-09 08:04:38.111][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2022-04-09 08:04:38.123][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:38.149][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:38.150][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:38.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:38.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:38.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:38.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:38.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:38.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:38.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:38.161][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.180][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:38.181][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:38.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.199][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:38.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:38.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:38.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:38.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.237][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:38.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:38.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:38.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:38.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:38.258][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:38.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.261][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:38.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:38.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.305][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:38.306][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:38.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.324][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:38.326][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:38.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.328][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:38.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:38.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.343][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:38.344][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:38.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:38.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:38.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:38.417][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2022-04-09 08:04:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:38.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:38.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:38.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:38.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:38.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:38.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:38.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:38.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:38.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.452][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:38.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:38.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:38.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.466][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.472][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:38.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:04:38.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:38.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:38.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:38.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:38.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:38.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:38.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.512][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:38.513][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:38.514][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:38.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.526][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.532][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:38.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:04:38.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:38.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:38.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:38.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:38.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:38.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:38.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.567][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:38.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:38.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:38.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.587][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:04:38.603][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:38.604][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:38.613][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:38.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.617][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:04:38.627][biodb::testThat] 
biodb.INFO [2022-04-09 08:04:38.628][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-04-09 08:04:38.629][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:04:38.631][biodb::testThat] 
biodb.TRACE[2022-04-09 08:04:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.643][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:38.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:38.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:38.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:38.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:38.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:38.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:38.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:38.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:38.848][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:38.852][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:38.853][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:04:38.855][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:38.856][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:04:38.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:38.863][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:38.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:04:38.866][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:38.868][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:04:38.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:38.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:38.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:38.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:38.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:38.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:38.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:38.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:38.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:38.906][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:38.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:04:38.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:38.910][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:04:38.913][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:38.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:38.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:38.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:38.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:38.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:38.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:38.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:38.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.933][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:38.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:38.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:38.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.947][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:38.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:38.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:38.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:38.968][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:38.970][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:38.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:38.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:38.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:38.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:38.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:38.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:38.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:39.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:39.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:39.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:04:39.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:39.129][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:04:39.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.176][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:39.179][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:39.181][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:04:39.182][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:39.184][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:04:39.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.252][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:39.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.271][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.272][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:39.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:39.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:39.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.287][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.293][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:39.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.332][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:39.333][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:39.334][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:39.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.340][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.346][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:39.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:39.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.386][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:39.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:39.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:39.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.400][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:39.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.406][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:39.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:39.422][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:39.423][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:39.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:39.565][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:39.568][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:39.569][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:04:39.571][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:39.572][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:04:39.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.619][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:39.622][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:39.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:04:39.625][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:39.626][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:04:39.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:39.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:39.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:39.683][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2022-04-09 08:04:39.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:39.686][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2022-04-09 08:04:39.687][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:39.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:39.690][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:39.691][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:39.692][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:39.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:39.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:39.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:39.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:39.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:39.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:39.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:39.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:39.709][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2022-04-09 08:04:39.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:39.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:39.715][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2022-04-09 08:04:40.220][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2022-04-09 08:04:40.760][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:40.791][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2022-04-09 08:04:40.825][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2022-04-09 08:04:40.857][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2022-04-09 08:04:40.869][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:40.895][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:40.897][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:40.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:40.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:40.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:40.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:40.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:40.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:40.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:40.908][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:40.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:40.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.927][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:40.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:40.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.947][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:40.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:40.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:40.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:40.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:40.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:40.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:40.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:40.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:40.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.011][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:41.012][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:41.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.030][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:41.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:41.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.050][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:41.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:41.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:41.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:41.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.069][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:41.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:41.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:41.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.089][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:41.090][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:41.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.094][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:41.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:41.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:41.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:41.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:41.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:41.188][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2022-04-09 08:04:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:41.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:41.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:41.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:41.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:41.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:41.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:41.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:41.211][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2022-04-09 08:04:41.212][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:41.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2022-04-09 08:04:41.215][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:41.217][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:41.218][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:41.219][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:41.220][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:41.221][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:41.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:41.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:41.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:41.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:41.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:41.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:41.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:41.232][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2022-04-09 08:04:41.235][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:41.236][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:41.238][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2022-04-09 08:04:41.776][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2022-04-09 08:04:42.325][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:42.346][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2022-04-09 08:04:42.379][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2022-04-09 08:04:42.410][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2022-04-09 08:04:42.421][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:42.447][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:42.448][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:42.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:42.459][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.478][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:42.479][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:42.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:42.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.501][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:42.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:42.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:42.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:42.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.520][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:42.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:42.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:42.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:42.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:42.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:42.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.557][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:42.558][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:42.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.576][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:42.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.594][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.613][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:42.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.631][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:42.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:42.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:42.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:42.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:42.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:42.730][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2022-04-09 08:04:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:42.744][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:42.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.763][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:42.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:42.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:42.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.777][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.783][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:04:42.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.816][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:42.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:42.818][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:42.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.830][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.836][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.851][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:04:42.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.870][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:42.871][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:42.872][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:42.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.888][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:42.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.894][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2022-04-09 08:04:42.909][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:42.911][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:42.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:42.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:42.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:42.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:42.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:42.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:42.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:42.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:43.113][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:43.117][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:43.118][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:04:43.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:43.121][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:04:43.124][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:43.127][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:43.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:04:43.130][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:43.131][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:04:43.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:43.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:43.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:43.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:43.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:43.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:43.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:43.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:43.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:43.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:43.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:43.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:43.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:43.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:43.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:43.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:43.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:43.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:43.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:43.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:43.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:43.198][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:43.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:43.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:43.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:43.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:43.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:43.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:43.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.217][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:43.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:43.220][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:43.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.232][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.237][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:04:43.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:43.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:43.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:43.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:43.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:43.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:43.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.277][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:43.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:43.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:43.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.292][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.297][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:43.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:43.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:43.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:43.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:43.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:43.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:43.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:43.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.331][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:43.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:43.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:43.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.345][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:43.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.350][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:43.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:43.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:43.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:04:43.366][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:43.367][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:43.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:43.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:43.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:43.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:43.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:43.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:43.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:43.515][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:43.518][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:43.519][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:43.521][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:04:44.020][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:04:44.564][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:44.585][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90efcfe115f7c339aea3aa4183474f2a.content"
biodb.TRACE[2022-04-09 08:04:44.617][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90efcfe115f7c339aea3aa4183474f2a.request"
biodb.DEBUG[2022-04-09 08:04:44.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:44.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:44.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:44.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:44.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:44.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:44.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:44.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:44.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:44.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:44.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:44.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:44.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:44.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:44.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:44.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:44.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:44.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:44.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:44.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:44.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:44.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:44.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:44.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:44.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:44.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:44.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:44.681][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2022-04-09 08:04:44.682][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:44.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2022-04-09 08:04:44.685][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:44.686][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:44.688][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:44.689][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:44.690][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:44.691][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:44.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:44.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:44.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:44.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:44.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:44.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:44.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:44.702][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2022-04-09 08:04:44.705][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:44.706][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:44.708][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2022-04-09 08:04:45.226][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2022-04-09 08:04:45.944][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:45.966][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2022-04-09 08:04:46.009][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2022-04-09 08:04:46.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2022-04-09 08:04:46.053][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:46.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:46.081][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:46.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:46.092][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.112][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:46.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:46.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:46.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.131][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:46.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:46.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:46.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:46.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:46.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:46.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:46.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:46.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:46.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:46.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.217][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:46.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:46.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.254][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:46.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:46.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:46.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.273][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:46.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:46.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:46.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:46.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:46.366][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2022-04-09 08:04:46.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:46.385][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:46.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.405][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:46.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:46.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:46.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.419][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.424][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:46.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:46.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.459][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:46.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:46.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:46.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.473][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.479][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:46.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.513][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:46.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:46.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:46.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.527][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:46.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.533][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2022-04-09 08:04:46.549][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:46.550][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:46.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:46.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:46.696][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:46.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:04:46.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:46.701][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:04:46.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:46.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:46.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:46.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:46.783][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2022-04-09 08:04:46.784][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:46.786][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2022-04-09 08:04:46.787][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:46.788][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:46.789][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:46.791][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:46.792][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:46.793][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:46.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:46.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:46.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:46.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:46.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:46.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:46.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:46.804][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2022-04-09 08:04:46.807][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:46.808][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:46.809][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2022-04-09 08:04:47.315][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2022-04-09 08:04:47.867][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:47.889][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2022-04-09 08:04:47.922][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2022-04-09 08:04:47.955][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2022-04-09 08:04:47.967][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:47.992][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:47.993][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:47.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:47.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:47.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:47.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:48.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:48.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:48.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:48.005][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.006][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.023][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:48.025][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:48.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.028][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:48.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.043][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:48.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:48.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:48.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:48.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:48.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:48.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:48.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.104][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:48.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:48.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.109][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:48.110][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.146][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:48.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:48.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:48.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.165][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:48.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:48.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:48.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.184][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:48.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:48.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:48.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:48.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:48.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:48.262][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2022-04-09 08:04:48.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:48.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:48.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:48.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:48.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:48.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:48.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:48.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:48.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:48.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:48.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:48.285][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2022-04-09 08:04:48.286][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:48.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2022-04-09 08:04:48.289][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:48.290][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:48.291][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:48.292][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:48.293][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:48.295][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:48.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:48.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:48.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:48.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:48.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:48.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:48.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:48.305][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2022-04-09 08:04:48.308][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:48.310][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:48.311][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2022-04-09 08:04:48.929][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2022-04-09 08:04:49.502][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:49.523][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2022-04-09 08:04:49.555][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2022-04-09 08:04:49.587][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2022-04-09 08:04:49.598][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:49.624][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:49.626][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:49.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:49.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:49.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:49.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:49.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:49.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:49.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:49.637][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.656][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:49.661][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:49.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.680][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:49.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:49.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:49.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:49.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:49.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.737][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:49.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:49.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.742][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:49.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.781][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:49.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:49.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:49.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.800][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:49.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:49.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.804][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:49.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.819][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:49.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:49.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.822][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:49.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:49.897][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2022-04-09 08:04:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:49.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:49.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:49.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:49.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:49.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:49.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:49.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:49.920][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2022-04-09 08:04:49.921][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:49.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2022-04-09 08:04:49.924][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:49.925][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:49.927][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:49.928][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:49.929][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:49.930][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:49.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:49.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:49.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:49.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:49.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:49.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:49.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:49.941][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2022-04-09 08:04:49.944][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:49.945][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:49.947][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2022-04-09 08:04:50.577][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2022-04-09 08:04:51.352][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:51.375][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2022-04-09 08:04:51.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2022-04-09 08:04:51.438][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2022-04-09 08:04:51.450][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:51.476][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:51.478][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:51.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:51.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:51.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:51.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:51.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:51.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:51.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:51.496][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.515][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:51.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:51.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:51.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.533][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:51.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:51.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:51.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:51.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:51.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:51.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:51.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:51.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.589][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:51.590][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:51.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:51.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.608][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:51.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:51.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.612][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.645][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:51.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:51.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.665][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:51.666][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:51.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:51.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:51.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:51.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:51.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:51.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:51.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:51.762][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2022-04-09 08:04:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:51.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:51.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:51.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:51.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:51.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:51.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:51.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:51.785][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2022-04-09 08:04:51.786][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:51.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2022-04-09 08:04:51.789][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:51.790][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:51.792][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:51.793][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:51.794][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:51.795][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:51.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:51.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:51.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:51.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:51.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:51.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:51.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:51.806][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2022-04-09 08:04:51.809][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:51.810][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:51.812][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2022-04-09 08:04:52.331][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2022-04-09 08:04:53.310][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:53.331][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2022-04-09 08:04:53.365][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2022-04-09 08:04:53.397][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2022-04-09 08:04:53.417][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:53.443][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:53.444][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:53.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:53.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:53.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:53.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:53.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:53.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:53.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:53.455][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.475][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:53.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:53.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:53.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.494][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:53.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:53.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:53.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:53.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:53.514][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:53.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:53.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:53.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:53.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:53.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:53.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:53.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.556][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:53.558][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:53.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.595][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:53.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:53.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.603][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:53.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:53.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.620][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:53.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:53.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:53.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:53.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:53.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:53.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:53.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:53.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:53.712][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2022-04-09 08:04:53.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:53.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:53.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:53.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:53.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:53.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:53.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:53.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:53.735][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2022-04-09 08:04:53.736][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:53.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2022-04-09 08:04:53.739][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:53.740][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:53.741][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:53.742][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:53.743][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:53.745][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:53.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:53.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:53.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:53.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:53.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:53.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:53.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:53.756][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2022-04-09 08:04:53.759][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:53.760][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:53.761][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2022-04-09 08:04:54.268][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2022-04-09 08:04:54.829][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:54.850][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2022-04-09 08:04:54.883][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2022-04-09 08:04:54.923][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2022-04-09 08:04:54.934][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:54.960][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:54.961][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:54.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:54.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:54.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:54.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:54.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:54.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:54.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:54.973][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:54.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:54.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:54.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:54.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:54.992][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:54.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:54.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:54.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:54.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:54.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.011][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:55.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:55.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:55.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:55.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:55.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.033][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:55.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:55.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:55.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:55.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:55.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:55.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.073][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:55.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.117][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:55.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:55.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:55.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:55.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:55.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.155][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:55.156][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:55.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:55.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:55.228][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2022-04-09 08:04:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:55.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:55.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:55.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:55.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:55.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:55.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:55.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:55.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:55.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:55.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:55.251][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2022-04-09 08:04:55.253][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:55.254][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2022-04-09 08:04:55.256][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:55.257][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:55.258][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:55.259][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:55.260][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:55.261][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:55.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:55.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:55.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:55.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:55.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:55.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:55.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:55.272][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2022-04-09 08:04:55.276][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:55.277][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:55.282][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2022-04-09 08:04:55.792][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2022-04-09 08:04:56.333][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:56.355][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2022-04-09 08:04:56.399][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2022-04-09 08:04:56.431][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2022-04-09 08:04:56.443][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:56.469][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:56.471][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:56.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:56.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:56.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:56.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:56.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:56.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:56.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:56.481][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.501][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:56.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:56.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:56.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:56.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.521][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:56.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:56.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:56.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:56.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:56.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:56.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:56.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:56.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:56.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.585][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:56.587][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.590][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:56.591][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:56.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.629][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:56.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:56.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:56.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:56.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.650][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:56.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:56.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:56.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:56.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:56.743][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2022-04-09 08:04:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:56.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:56.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:56.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:56.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:56.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:56.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:56.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:56.770][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2022-04-09 08:04:56.771][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:04:56.773][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2022-04-09 08:04:56.775][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:04:56.776][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:04:56.777][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:04:56.778][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:04:56.779][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:04:56.780][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:04:56.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:56.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:56.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:56.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:56.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:56.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:56.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:56.791][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2022-04-09 08:04:56.794][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:04:56.795][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:04:56.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2022-04-09 08:04:57.315][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2022-04-09 08:04:57.861][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:04:57.882][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2022-04-09 08:04:57.914][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2022-04-09 08:04:57.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2022-04-09 08:04:57.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:04:57.984][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:04:57.985][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:04:57.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:57.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:57.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:57.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:57.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:57.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:57.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:57.996][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:57.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:57.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:58.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:58.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.015][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:58.017][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:58.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.020][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:04:58.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:04:58.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.167][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:58.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:58.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:04:58.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:04:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:58.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:58.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:04:58.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:04:58.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:58.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:58.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:04:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:04:58.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:58.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:04:58.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.229][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:58.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:04:58.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.267][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:58.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:58.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:04:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:04:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:58.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:58.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:04:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:04:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.305][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:58.306][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:58.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:04:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:04:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:58.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:58.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:58.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:58.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:04:58.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:04:58.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:58.411][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2022-04-09 08:04:58.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:58.426][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:58.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:58.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:58.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:58.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:58.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:58.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:58.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:58.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.446][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:58.447][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:58.448][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:58.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.460][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.465][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:04:58.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:58.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:58.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:58.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:58.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:58.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:58.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:58.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.499][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:58.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:58.501][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:58.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.513][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.519][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:58.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2022-04-09 08:04:58.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:58.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:58.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:58.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:58.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:58.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:58.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:58.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.553][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:58.554][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:58.555][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:58.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.567][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.573][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:58.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.587][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2022-04-09 08:04:58.589][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:58.590][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:58.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.606][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:04:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:04:58.616][biodb::testThat] 
biodb.INFO [2022-04-09 08:04:58.617][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-04-09 08:04:58.618][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:04:58.619][biodb::testThat] 
biodb.TRACE[2022-04-09 08:04:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.627][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:04:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:04:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:58.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:58.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:58.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:58.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:58.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:58.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:58.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:58.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:58.834][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:58.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:04:58.837][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:58.839][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:04:58.842][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:58.845][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:58.846][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:04:58.848][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:58.849][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:04:58.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:58.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:58.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:58.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:58.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:58.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:58.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:58.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:58.875][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:58.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:58.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:04:58.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:58.882][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:04:58.885][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:58.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:58.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:58.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:58.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:58.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:58.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:58.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.904][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:58.905][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:58.906][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:58.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.916][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.918][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:58.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.924][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:58.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:58.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:58.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:04:58.939][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:58.940][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:58.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:58.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:58.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:58.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:58.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:58.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:58.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:59.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:59.083][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:59.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:04:59.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:59.087][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:04:59.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:59.136][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:59.138][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:04:59.139][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:59.141][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:04:59.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.212][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:59.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.231][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:59.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:59.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:59.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.245][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.251][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:04:59.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.284][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:59.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:59.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:59.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.299][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.303][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.304][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:59.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:04:59.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.338][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:59.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:59.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:59.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.352][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:59.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:04:59.373][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:59.374][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:04:59.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:04:59.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:59.511][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:59.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:04:59.514][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:59.515][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:04:59.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:59.671][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:59.672][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:04:59.674][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:59.675][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:04:59.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.720][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:04:59.723][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:04:59.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:04:59.726][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:04:59.728][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:04:59.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:04:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:04:59.779][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:04:59.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.798][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:59.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:59.800][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:59.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.811][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.817][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:59.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.831][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:04:59.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.850][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:59.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:59.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:59.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.863][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.868][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:59.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:04:59.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:04:59.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:04:59.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:04:59.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:04:59.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:04:59.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:04:59.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:04:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.901][private$selectFields] 
biodb.TRACE[2022-04-09 08:04:59.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:04:59.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:04:59.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.913][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.915][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:04:59.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.921][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:04:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:04:59.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:04:59.936][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:04:59.937][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:04:59.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:04:59.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:04:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:04:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:00.151][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:00.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:00.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:00.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:00.158][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:00.161][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:00.164][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:00.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:00.167][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:00.169][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:00.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.233][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:00.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.253][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:00.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:00.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:00.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.266][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.272][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:00.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:00.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.305][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:00.306][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:00.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:00.308][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.319][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.342][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:00.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.361][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:00.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:00.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:00.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.375][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.380][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:00.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:00.396][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:00.397][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:00.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:00.537][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:00.540][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:00.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:05:00.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:00.545][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:05:00.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.609][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:00.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.628][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:00.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:00.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:00.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.642][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.647][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:00.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:00.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.682][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:00.683][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:00.684][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:00.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.696][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.702][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:05:00.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.740][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:00.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:00.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:00.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.754][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:00.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.759][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.760][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:00.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:00.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:05:00.776][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:00.777][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:00.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:00.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:00.922][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:00.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:00.925][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:00.926][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:00.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:00.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:00.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:00.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:00.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:00.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:00.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:00.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:00.994][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:00.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:00.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:00.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:00.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:01.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:01.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:01.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:01.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.014][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:01.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:01.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:01.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.028][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.033][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:01.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:01.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:01.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:01.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:01.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:01.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:01.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:01.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.068][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:01.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:01.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:01.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.082][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.088][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:05:01.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:01.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:01.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:01.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:01.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:01.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:01.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:01.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.126][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:01.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:01.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:01.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.140][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:01.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.146][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:01.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:05:01.162][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:01.163][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:01.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.189][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:01.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:01.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:01.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:01.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:01.199][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:01.200][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-04-09 08:05:01.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:01.202][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:01.206][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:01.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:01.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:01.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:01.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.215][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:01.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:01.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:01.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:01.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:01.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:01.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:01.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:01.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:01.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:01.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:01.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:01.426][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:01.427][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:01.428][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:01.975][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:02.634][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:02.654][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.content"
biodb.TRACE[2022-04-09 08:05:02.688][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.request"
biodb.DEBUG[2022-04-09 08:05:02.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:02.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:02.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:02.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:02.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:02.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:02.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:02.712][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2022-04-09 08:05:02.713][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:02.715][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2022-04-09 08:05:02.716][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:02.717][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:02.718][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:02.720][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:02.721][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:02.722][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:02.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:02.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:02.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:02.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:02.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:02.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:02.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:02.738][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2022-04-09 08:05:02.741][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:02.742][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:02.744][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2022-04-09 08:05:03.246][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2022-04-09 08:05:03.784][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:03.813][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2022-04-09 08:05:03.846][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2022-04-09 08:05:03.877][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2022-04-09 08:05:03.889][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:03.914][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:03.916][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:03.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:03.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:03.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:03.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:03.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:03.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:03.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:03.927][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:03.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:03.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.946][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:03.947][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:03.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:03.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:03.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.965][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:03.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:03.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:03.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:03.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:03.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:03.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:03.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:04.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:04.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:04.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:04.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:04.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:04.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:04.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:04.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.044][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:04.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.048][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:04.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:04.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:04.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.081][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:04.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:04.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:04.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.100][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:04.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:04.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.118][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:04.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:04.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:04.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:04.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:04.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:04.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:04.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:04.198][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2022-04-09 08:05:04.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:04.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:04.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:04.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:04.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:04.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:04.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:04.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.220][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2022-04-09 08:05:04.222][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:04.223][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2022-04-09 08:05:04.225][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:04.226][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:04.227][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:04.228][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:04.229][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:04.230][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:04.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:04.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:04.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:04.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.241][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2022-04-09 08:05:04.244][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:04.246][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:04.247][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2022-04-09 08:05:04.747][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2022-04-09 08:05:05.297][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:05.318][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2022-04-09 08:05:05.350][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2022-04-09 08:05:05.381][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2022-04-09 08:05:05.392][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:05.418][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:05.419][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:05.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:05.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:05.430][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.450][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.454][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.473][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.548][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:05.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.568][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.585][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:05.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:05.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.623][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.624][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:05.701][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2022-04-09 08:05:05.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:05.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:05.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.723][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2022-04-09 08:05:05.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:05.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2022-04-09 08:05:05.727][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:05.728][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:05.730][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:05.731][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:05.732][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:05.733][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:05.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:05.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.744][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2022-04-09 08:05:05.747][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:05.748][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:05.749][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2022-04-09 08:05:06.253][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2022-04-09 08:05:06.824][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:06.845][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2022-04-09 08:05:06.878][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2022-04-09 08:05:06.910][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2022-04-09 08:05:06.921][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:06.947][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:06.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:06.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:06.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:06.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:06.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:06.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:06.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:06.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:06.966][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.984][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.003][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:07.005][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:07.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:07.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.042][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:07.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.069][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:07.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.102][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.121][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:07.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:07.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:07.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:07.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.140][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.141][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.217][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2022-04-09 08:05:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:07.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:07.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:07.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:07.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:07.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:07.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:07.239][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2022-04-09 08:05:07.240][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:07.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2022-04-09 08:05:07.243][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:07.244][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:07.245][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:07.247][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:07.248][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:07.249][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:07.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:07.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:07.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:07.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:07.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:07.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:07.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:07.260][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2022-04-09 08:05:07.263][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:07.264][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:07.265][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2022-04-09 08:05:07.778][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2022-04-09 08:05:08.324][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:08.345][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2022-04-09 08:05:08.379][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2022-04-09 08:05:08.413][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2022-04-09 08:05:08.425][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:08.459][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:08.461][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:08.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:08.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:08.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:08.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:08.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:08.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:08.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:08.472][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.475][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.491][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:08.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:08.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:08.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.509][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:08.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:08.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:08.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:08.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:08.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:08.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:08.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:08.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.547][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:08.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:08.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:08.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:08.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:08.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:08.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.570][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:08.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:08.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:08.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:08.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:08.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.608][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:08.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:08.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:08.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:08.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:08.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:08.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:08.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:08.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:08.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:08.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:08.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:08.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:08.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:08.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:08.723][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2022-04-09 08:05:08.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:08.738][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:08.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:08.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:08.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:08.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:08.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:08.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:08.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.757][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:08.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:08.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:08.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.772][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.777][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:08.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:08.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:08.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:08.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:08.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:08.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:08.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.811][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:08.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:08.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:08.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.826][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.835][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:08.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-04-09 08:05:08.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:08.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:08.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:08.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:08.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:08.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:08.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:08.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.869][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:08.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:08.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:08.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.883][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:08.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:08.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:08.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:08.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:08.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-04-09 08:05:08.905][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:08.906][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:08.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:08.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:08.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:08.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:08.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:08.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:08.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:09.045][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:09.048][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:09.050][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:09.051][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:09.567][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:10.123][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:10.144][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.content"
biodb.TRACE[2022-04-09 08:05:10.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.request"
biodb.DEBUG[2022-04-09 08:05:10.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:10.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:10.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:10.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:10.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:10.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:10.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:10.196][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2022-04-09 08:05:10.197][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:10.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2022-04-09 08:05:10.200][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:10.202][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:10.203][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:10.204][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:10.205][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:10.206][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:10.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:10.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:10.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:10.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:10.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:10.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:10.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:10.217][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2022-04-09 08:05:10.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:10.221][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:10.222][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2022-04-09 08:05:10.729][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2022-04-09 08:05:11.316][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:11.338][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2022-04-09 08:05:11.371][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2022-04-09 08:05:11.403][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2022-04-09 08:05:11.415][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:11.447][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.449][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:11.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.460][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.479][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.480][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.498][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.555][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.560][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.565][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.579][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.599][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.603][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.619][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.643][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.644][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.719][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.741][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2022-04-09 08:05:11.742][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:11.744][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2022-04-09 08:05:11.745][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:11.746][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:11.748][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:11.749][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:11.750][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:11.751][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:11.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.762][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2022-04-09 08:05:11.765][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:11.766][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:11.768][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2022-04-09 08:05:12.279][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2022-04-09 08:05:12.848][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:12.870][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2022-04-09 08:05:12.903][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2022-04-09 08:05:12.942][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2022-04-09 08:05:12.954][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:12.980][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:12.981][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.992][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.012][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.031][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.069][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.090][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.094][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.098][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.138][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.156][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.175][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.176][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.247][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2022-04-09 08:05:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:13.269][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2022-04-09 08:05:13.270][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:13.272][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2022-04-09 08:05:13.273][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:13.274][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:13.275][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:13.277][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:13.278][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:13.279][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:13.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:13.289][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2022-04-09 08:05:13.293][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:13.294][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:13.295][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2022-04-09 08:05:13.843][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2022-04-09 08:05:14.393][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:14.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2022-04-09 08:05:14.458][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2022-04-09 08:05:14.490][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2022-04-09 08:05:14.501][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:14.528][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:14.529][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:14.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.540][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.560][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:14.561][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:14.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:14.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:14.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.579][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:14.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:14.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:14.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:14.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:14.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.639][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.652][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:14.653][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.691][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:14.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:14.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.711][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:14.712][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:14.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:14.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:14.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:14.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:14.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:14.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:14.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.805][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2022-04-09 08:05:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:14.828][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2022-04-09 08:05:14.829][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:14.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2022-04-09 08:05:14.833][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:14.834][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:14.835][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:14.836][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:14.837][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:14.838][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:14.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:14.854][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2022-04-09 08:05:14.857][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:14.858][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:14.860][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2022-04-09 08:05:15.382][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2022-04-09 08:05:15.921][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:15.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2022-04-09 08:05:15.983][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2022-04-09 08:05:16.054][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2022-04-09 08:05:16.065][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:16.090][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:16.091][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:16.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:16.102][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.121][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.140][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.183][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.205][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.210][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.242][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.261][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.353][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2022-04-09 08:05:16.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:16.379][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2022-04-09 08:05:16.380][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:16.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2022-04-09 08:05:16.383][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:16.384][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:16.386][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:16.387][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:16.388][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:16.389][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:16.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:16.400][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2022-04-09 08:05:16.403][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:16.404][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:16.405][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2022-04-09 08:05:17.012][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2022-04-09 08:05:17.589][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:17.611][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2022-04-09 08:05:17.646][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2022-04-09 08:05:17.704][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2022-04-09 08:05:17.716][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:17.743][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:17.744][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:17.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.755][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.774][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.775][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.793][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.796][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.817][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.853][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.872][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.908][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.927][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.928][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.025][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2022-04-09 08:05:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:18.048][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2022-04-09 08:05:18.049][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:18.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2022-04-09 08:05:18.052][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:18.053][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:18.054][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:18.055][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:18.057][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:18.058][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:18.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:18.068][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2022-04-09 08:05:18.072][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:18.073][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:18.074][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2022-04-09 08:05:18.609][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2022-04-09 08:05:19.277][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:19.318][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2022-04-09 08:05:19.351][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2022-04-09 08:05:19.382][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2022-04-09 08:05:19.394][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:19.420][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:19.422][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:19.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.433][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.436][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.455][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:19.456][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:19.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:19.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.473][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:19.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:19.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:19.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:19.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:19.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:19.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:19.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:19.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.510][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.528][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:19.529][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:19.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.532][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:19.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.569][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:19.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:19.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.588][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:19.589][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:19.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:19.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:19.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:19.608][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:19.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:19.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:19.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.684][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2022-04-09 08:05:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:19.706][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2022-04-09 08:05:19.707][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:19.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2022-04-09 08:05:19.710][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:19.711][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:19.712][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:19.714][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:19.715][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:19.716][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:19.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:19.726][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2022-04-09 08:05:19.729][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:19.730][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:19.732][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2022-04-09 08:05:20.290][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2022-04-09 08:05:20.856][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:20.877][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2022-04-09 08:05:20.909][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2022-04-09 08:05:20.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2022-04-09 08:05:20.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:20.989][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:20.990][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:20.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.001][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.002][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.020][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.021][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.038][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.115][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.153][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.175][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.179][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.193][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.194][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.264][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2022-04-09 08:05:21.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.278][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:21.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.297][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:21.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.311][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.316][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-04-09 08:05:21.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.349][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:21.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.373][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.378][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-04-09 08:05:21.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.411][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:21.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.425][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-04-09 08:05:21.445][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:21.446][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:21.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.582][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.585][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:21.586][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:21.587][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:22.092][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:22.662][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:22.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.content"
biodb.TRACE[2022-04-09 08:05:22.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.request"
biodb.DEBUG[2022-04-09 08:05:22.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.734][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2022-04-09 08:05:22.736][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:22.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2022-04-09 08:05:22.739][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:22.740][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:22.741][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:22.742][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:22.743][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:22.744][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:22.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.755][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2022-04-09 08:05:22.758][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:22.759][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:22.761][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2022-04-09 08:05:23.288][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2022-04-09 08:05:23.872][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:23.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2022-04-09 08:05:23.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2022-04-09 08:05:23.957][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2022-04-09 08:05:23.974][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:24.000][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:24.002][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:24.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.013][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.014][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.032][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.051][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.113][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.151][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.175][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.180][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.264][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2022-04-09 08:05:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.279][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:24.283][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:24.284][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:24.285][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:24.813][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:25.355][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:25.375][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.content"
biodb.TRACE[2022-04-09 08:05:25.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.request"
biodb.DEBUG[2022-04-09 08:05:25.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.427][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2022-04-09 08:05:25.428][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:25.430][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2022-04-09 08:05:25.431][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:25.432][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:25.433][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:25.435][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:25.436][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:25.437][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:25.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.455][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2022-04-09 08:05:25.459][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:25.460][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:25.461][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2022-04-09 08:05:25.958][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2022-04-09 08:05:26.497][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:26.526][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2022-04-09 08:05:26.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2022-04-09 08:05:26.588][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2022-04-09 08:05:26.599][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:26.624][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:26.625][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:26.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.635][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.654][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.673][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.674][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.734][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.752][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.788][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.806][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.902][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2022-04-09 08:05:26.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:26.945][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2022-04-09 08:05:26.946][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:26.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2022-04-09 08:05:26.949][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:26.950][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:26.951][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:26.952][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:26.953][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:26.954][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:26.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:26.965][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2022-04-09 08:05:26.968][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:26.969][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:26.970][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2022-04-09 08:05:27.478][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2022-04-09 08:05:28.043][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:28.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2022-04-09 08:05:28.096][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2022-04-09 08:05:28.127][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2022-04-09 08:05:28.139][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:28.165][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:28.167][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:28.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.178][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.179][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.197][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:28.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:28.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:28.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.221][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:28.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:28.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.240][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:28.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:28.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.262][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.278][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.279][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.297][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:28.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.301][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:28.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.334][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:28.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:28.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:28.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:28.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:28.355][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:28.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:28.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:28.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:28.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:28.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.451][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.473][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2022-04-09 08:05:28.474][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:28.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2022-04-09 08:05:28.477][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:28.478][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:28.480][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:28.481][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:28.482][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:28.483][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:28.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.494][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2022-04-09 08:05:28.497][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:28.498][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:28.500][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2022-04-09 08:05:29.015][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2022-04-09 08:05:29.600][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:29.621][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2022-04-09 08:05:29.653][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2022-04-09 08:05:29.684][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2022-04-09 08:05:29.695][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:29.728][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:29.729][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:29.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.740][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.759][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.760][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.777][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.837][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.839][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.876][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.896][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.920][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.921][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.993][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2022-04-09 08:05:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.007][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:30.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.027][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:30.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:30.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:30.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.042][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.047][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:30.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-04-09 08:05:30.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.081][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:30.082][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:30.083][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:30.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.095][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-04-09 08:05:30.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.139][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:30.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:30.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:30.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.153][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.159][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-04-09 08:05:30.174][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:30.175][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:30.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.335][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:30.338][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:30.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:30.341][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.342][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:30.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:30.348][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:30.350][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:30.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.353][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:30.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.377][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:30.380][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:30.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:30.382][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.384][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:30.386][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:30.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.406][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:30.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:30.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:30.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.420][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.424][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:30.441][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:30.442][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:30.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:30.583][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:30.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:30.586][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.589][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:30.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:30.638][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:30.639][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:30.640][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.642][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:30.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.713][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:30.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.732][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:30.733][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:30.734][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:30.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.746][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.752][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:30.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.785][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:30.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:30.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:30.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.798][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.799][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.804][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:30.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.819][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:30.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.838][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:30.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:30.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:30.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.852][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:30.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.857][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:30.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.876][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:30.878][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:30.879][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:30.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:31.012][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:31.015][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:31.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:05:31.018][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.019][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:05:31.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:31.198][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:31.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:31.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.202][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:31.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.248][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:31.251][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:31.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:31.254][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.260][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:31.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.308][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:31.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.328][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:31.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.346][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.347][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:31.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.380][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:31.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.392][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.394][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.399][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:31.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.433][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:31.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.452][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.457][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:05:31.473][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:31.474][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:31.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:31.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:31.638][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:31.639][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:31.641][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:32.401][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:32.965][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:32.995][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.content"
biodb.TRACE[2022-04-09 08:05:33.027][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.request"
biodb.DEBUG[2022-04-09 08:05:33.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:33.091][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2022-04-09 08:05:33.092][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:33.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2022-04-09 08:05:33.095][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:33.096][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:33.098][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:33.099][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:33.100][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:33.101][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:33.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:33.112][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2022-04-09 08:05:33.115][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:33.116][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:33.117][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2022-04-09 08:05:33.651][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2022-04-09 08:05:34.192][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:34.213][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2022-04-09 08:05:34.246][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2022-04-09 08:05:34.289][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2022-04-09 08:05:34.301][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:34.327][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:34.329][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:34.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.340][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.359][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:34.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:34.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:34.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:34.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.378][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:34.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:34.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:34.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:34.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.401][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.456][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:34.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.499][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:34.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:34.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.519][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:34.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:34.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:34.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:34.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.611][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2022-04-09 08:05:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:34.685][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2022-04-09 08:05:34.687][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:34.688][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2022-04-09 08:05:34.690][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:34.691][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:34.692][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:34.693][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:34.694][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:34.696][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:34.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:34.711][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2022-04-09 08:05:34.714][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:34.715][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:34.717][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2022-04-09 08:05:35.224][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2022-04-09 08:05:35.765][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:35.795][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2022-04-09 08:05:35.827][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2022-04-09 08:05:35.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2022-04-09 08:05:35.869][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:35.895][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:35.896][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:35.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.907][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.926][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.945][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.006][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.011][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:36.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:36.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.049][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:36.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:36.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:36.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:36.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.068][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:36.070][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:36.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.087][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:36.088][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:36.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:36.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.162][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2022-04-09 08:05:36.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:36.189][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2022-04-09 08:05:36.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:36.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2022-04-09 08:05:36.194][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:36.195][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:36.196][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:36.197][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:36.198][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:36.199][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:36.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:36.210][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2022-04-09 08:05:36.213][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:36.214][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:36.216][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2022-04-09 08:05:36.733][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2022-04-09 08:05:37.312][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:37.333][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2022-04-09 08:05:37.366][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2022-04-09 08:05:37.397][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2022-04-09 08:05:37.408][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:37.434][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:37.435][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:37.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.446][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.466][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.490][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.491][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.509][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.510][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.523][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.561][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.579][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.598][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.676][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2022-04-09 08:05:37.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.692][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:37.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.712][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:37.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.726][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:37.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.766][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:37.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.780][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.786][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.801][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-04-09 08:05:37.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.820][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:37.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.835][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.840][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.841][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-04-09 08:05:37.857][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:37.858][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:37.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:37.997][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:38.000][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:38.001][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:38.003][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:38.528][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:39.241][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:39.262][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.content"
biodb.TRACE[2022-04-09 08:05:39.295][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.request"
biodb.DEBUG[2022-04-09 08:05:39.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.385][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:39.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.404][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:39.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:39.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:39.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.416][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.419][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.424][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:39.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.458][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:39.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:39.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:39.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.472][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.478][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:39.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:39.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.512][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:39.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:39.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:39.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.531][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:39.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.537][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:39.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:39.552][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:39.553][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:39.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:39.695][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:39.696][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:39.698][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:05:40.209][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:05:40.865][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:40.886][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.content"
biodb.TRACE[2022-04-09 08:05:40.928][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.request"
biodb.DEBUG[2022-04-09 08:05:40.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:40.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:40.970][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2022-04-09 08:05:40.971][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:40.973][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2022-04-09 08:05:40.974][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:40.975][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:40.977][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:40.978][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:40.979][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:40.980][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:40.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:40.991][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2022-04-09 08:05:40.994][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:40.995][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:40.997][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2022-04-09 08:05:41.603][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2022-04-09 08:05:42.270][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:42.293][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2022-04-09 08:05:42.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2022-04-09 08:05:42.356][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2022-04-09 08:05:42.368][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:42.400][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:42.402][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:42.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.413][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.416][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.432][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.451][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.508][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.512][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.550][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.569][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.570][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.594][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.667][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.690][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2022-04-09 08:05:42.691][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:42.693][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2022-04-09 08:05:42.694][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:42.696][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:42.697][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:42.698][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:42.699][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:42.700][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:42.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.711][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2022-04-09 08:05:42.714][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:42.715][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:42.717][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2022-04-09 08:05:43.803][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2022-04-09 08:05:44.369][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:44.419][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2022-04-09 08:05:44.452][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2022-04-09 08:05:44.492][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2022-04-09 08:05:44.503][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:44.529][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:44.530][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:44.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.541][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.560][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:44.561][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:44.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:44.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.578][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:44.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:44.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:44.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:44.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:44.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:44.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.635][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:44.636][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:44.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.639][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:44.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:44.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.659][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.683][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:44.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:44.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.702][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:44.703][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:44.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:44.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.721][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:44.722][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:44.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:44.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.796][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2022-04-09 08:05:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:44.819][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2022-04-09 08:05:44.820][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:44.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2022-04-09 08:05:44.823][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:44.824][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:44.825][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:44.826][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:44.828][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:44.829][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:44.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:44.839][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2022-04-09 08:05:44.843][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:44.844][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:44.845][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2022-04-09 08:05:45.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2022-04-09 08:05:46.138][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:46.159][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2022-04-09 08:05:46.200][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2022-04-09 08:05:46.230][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2022-04-09 08:05:46.242][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:46.267][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:46.268][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:46.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.279][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.299][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.300][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.318][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.340][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.382][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.386][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:46.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.389][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:46.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.423][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.441][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:46.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.460][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.461][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.533][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2022-04-09 08:05:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:46.582][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2022-04-09 08:05:46.583][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:46.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2022-04-09 08:05:46.586][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:46.587][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:46.588][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:46.590][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:46.591][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:46.592][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:46.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:46.602][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2022-04-09 08:05:46.606][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:46.607][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:46.608][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2022-04-09 08:05:47.136][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2022-04-09 08:05:47.713][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:47.735][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2022-04-09 08:05:47.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2022-04-09 08:05:47.800][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2022-04-09 08:05:47.812][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:47.838][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:47.840][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:47.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.851][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.870][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.894][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.914][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.934][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.953][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.955][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.970][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:47.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.008][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.027][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:48.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.048][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:48.126][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2022-04-09 08:05:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:48.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:48.149][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2022-04-09 08:05:48.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:48.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2022-04-09 08:05:48.153][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:48.154][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:48.155][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:48.157][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:48.158][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:48.159][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:48.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:48.170][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2022-04-09 08:05:48.173][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:48.174][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:48.175][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2022-04-09 08:05:48.695][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2022-04-09 08:05:49.259][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:49.281][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2022-04-09 08:05:49.314][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2022-04-09 08:05:49.346][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2022-04-09 08:05:49.358][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:49.391][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:49.393][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:49.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:49.404][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.423][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.442][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.517][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:49.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.521][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:49.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.555][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.579][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:49.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.598][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:49.671][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2022-04-09 08:05:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:49.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:49.694][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2022-04-09 08:05:49.695][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:49.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2022-04-09 08:05:49.698][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:49.699][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:49.701][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:49.702][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:49.703][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:49.704][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:49.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:49.715][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2022-04-09 08:05:49.718][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:49.719][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:49.721][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2022-04-09 08:05:50.616][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2022-04-09 08:05:51.305][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:51.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2022-04-09 08:05:51.360][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2022-04-09 08:05:51.401][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2022-04-09 08:05:51.412][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:51.437][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:51.439][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:51.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:51.450][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.469][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.488][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.547][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.548][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.552][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:51.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.556][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.596][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.616][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:51.617][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.637][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:51.710][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2022-04-09 08:05:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:51.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:51.733][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2022-04-09 08:05:51.734][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:51.735][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2022-04-09 08:05:51.737][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:51.738][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:51.739][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:51.741][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:51.742][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:51.743][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:51.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:51.754][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2022-04-09 08:05:51.758][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:51.759][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:51.760][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2022-04-09 08:05:52.533][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2022-04-09 08:05:53.223][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:53.244][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2022-04-09 08:05:53.286][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2022-04-09 08:05:53.317][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2022-04-09 08:05:53.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:53.353][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:53.355][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:53.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:53.365][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.384][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.385][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.403][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.469][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:53.471][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.506][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.525][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:53.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.543][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:53.617][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2022-04-09 08:05:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:53.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:53.645][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2022-04-09 08:05:53.646][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:53.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2022-04-09 08:05:53.649][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:53.651][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:53.652][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:53.653][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:53.654][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:53.655][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:53.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:53.666][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2022-04-09 08:05:53.669][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:53.670][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:53.672][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2022-04-09 08:05:54.205][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2022-04-09 08:05:54.859][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:54.880][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2022-04-09 08:05:54.913][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2022-04-09 08:05:54.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2022-04-09 08:05:54.955][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:54.981][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:54.982][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:54.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:54.994][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.013][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.038][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.100][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:55.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:55.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.138][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:55.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.178][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:55.257][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2022-04-09 08:05:55.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:55.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:55.280][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2022-04-09 08:05:55.281][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:55.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2022-04-09 08:05:55.284][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:55.285][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:55.286][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:55.288][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:55.289][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:55.290][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:55.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:55.300][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2022-04-09 08:05:55.303][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:55.305][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:55.306][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2022-04-09 08:05:55.873][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2022-04-09 08:05:56.710][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:56.731][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2022-04-09 08:05:56.763][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2022-04-09 08:05:56.794][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2022-04-09 08:05:56.805][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:56.962][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:56.964][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:56.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:56.975][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.994][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.013][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.069][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.073][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:57.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:57.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.111][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:57.135][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.157][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.158][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:57.230][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2022-04-09 08:05:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:57.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:57.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:57.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:57.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:57.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:57.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:57.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:57.253][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2022-04-09 08:05:57.254][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:57.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2022-04-09 08:05:57.257][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:57.258][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:57.259][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:57.260][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:57.261][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:57.262][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:57.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:57.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:57.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:57.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:57.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:57.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:57.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:57.273][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2022-04-09 08:05:57.276][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:57.278][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:57.279][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2022-04-09 08:05:57.884][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2022-04-09 08:05:58.545][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:05:58.566][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2022-04-09 08:05:58.600][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2022-04-09 08:05:58.632][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2022-04-09 08:05:58.650][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:05:58.677][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:58.678][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:58.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:58.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:58.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:58.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:58.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:58.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:58.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:58.689][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.690][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.708][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:58.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:58.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:58.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:58.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.728][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:58.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:58.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:58.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:58.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:58.748][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:58.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.750][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:58.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:58.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:58.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:58.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:58.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:58.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:58.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.791][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:58.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:58.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.795][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:58.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.830][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:58.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:58.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:58.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:58.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.854][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:58.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:58.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:58.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:58.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:58.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:58.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:58.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:58.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:58.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:58.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:58.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:58.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:58.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:58.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:58.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:58.949][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2022-04-09 08:05:58.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:58.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:58.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:58.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:58.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:58.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:58.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:58.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:58.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:58.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:58.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:58.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:58.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:58.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:58.971][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2022-04-09 08:05:58.973][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:58.974][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2022-04-09 08:05:58.976][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:05:58.977][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:05:58.978][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:58.979][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:58.981][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:05:58.982][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:05:58.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:58.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:58.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:58.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:58.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:58.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:58.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:58.992][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2022-04-09 08:05:58.996][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:05:58.997][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:05:58.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2022-04-09 08:05:59.510][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2022-04-09 08:06:00.066][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:00.088][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2022-04-09 08:06:00.124][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2022-04-09 08:06:00.165][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2022-04-09 08:06:00.177][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:00.202][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:00.204][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:00.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.215][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.234][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.235][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.253][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.293][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.310][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.315][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:00.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.320][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:00.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.357][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.376][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:00.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:00.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.469][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2022-04-09 08:06:00.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.622][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2022-04-09 08:06:00.623][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:00.625][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2022-04-09 08:06:00.626][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:00.627][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:00.628][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:00.629][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:00.631][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:00.632][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:00.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.642][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2022-04-09 08:06:00.645][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:00.647][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:00.648][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2022-04-09 08:06:01.209][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2022-04-09 08:06:01.776][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:01.797][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2022-04-09 08:06:01.830][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2022-04-09 08:06:01.861][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2022-04-09 08:06:01.872][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:01.903][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:01.905][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:01.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:01.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:01.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:01.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:01.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:01.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:01.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:01.915][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.935][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.936][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.954][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.017][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:02.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.036][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.056][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.076][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:02.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:02.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:02.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:02.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.100][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:02.101][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:02.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.174][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2022-04-09 08:06:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:02.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:02.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:02.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:02.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:02.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:02.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:02.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:02.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:02.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:02.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:02.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:02.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:02.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:02.218][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2022-04-09 08:06:02.219][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:02.221][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2022-04-09 08:06:02.222][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:02.223][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:02.225][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:02.226][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:02.227][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:02.228][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:02.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:02.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:02.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:02.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:02.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:02.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:02.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:02.239][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2022-04-09 08:06:02.242][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:02.243][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:02.245][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2022-04-09 08:06:02.760][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2022-04-09 08:06:03.508][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:03.529][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2022-04-09 08:06:03.562][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2022-04-09 08:06:03.600][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2022-04-09 08:06:03.611][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:03.637][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:03.638][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:03.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:03.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:03.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:03.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:03.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:03.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:03.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:03.649][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.668][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:03.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:03.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:03.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:03.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.686][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:03.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:03.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:03.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:03.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:03.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:03.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:03.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.724][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:03.725][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:03.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.743][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:03.744][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:03.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.748][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:03.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:03.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.789][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:03.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:03.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.808][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:03.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:03.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:03.829][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:03.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:03.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:03.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:03.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:03.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:03.903][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2022-04-09 08:06:03.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:03.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:03.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:03.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:03.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:03.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:03.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:03.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:03.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:03.926][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2022-04-09 08:06:03.927][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:03.929][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2022-04-09 08:06:03.930][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:03.931][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:03.932][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:03.934][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:03.935][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:03.936][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:03.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:03.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:03.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:03.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:03.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:03.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:03.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:03.947][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2022-04-09 08:06:03.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:03.951][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:03.953][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2022-04-09 08:06:04.492][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2022-04-09 08:06:05.042][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:05.063][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2022-04-09 08:06:05.103][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2022-04-09 08:06:05.135][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2022-04-09 08:06:05.148][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:05.174][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:05.176][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:05.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:05.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:05.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:05.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:05.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:05.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:05.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:05.187][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.207][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:05.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:05.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:05.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.226][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:05.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:05.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:05.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:05.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:05.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:05.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:05.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:05.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:05.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:05.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:05.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:05.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:05.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.295][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:05.296][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.300][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:05.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.318][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.334][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:05.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:05.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:05.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.354][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:05.355][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:05.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:05.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:05.375][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:05.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:05.446][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2022-04-09 08:06:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:05.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:05.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:05.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:05.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:05.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:05.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:05.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:05.473][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2022-04-09 08:06:05.474][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:05.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2022-04-09 08:06:05.477][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:05.478][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:05.479][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:05.480][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:05.481][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:05.482][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:05.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:05.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:05.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:05.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:05.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:05.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:05.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:05.493][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2022-04-09 08:06:05.496][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:05.497][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:05.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2022-04-09 08:06:06.021][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2022-04-09 08:06:06.614][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:06.637][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2022-04-09 08:06:06.671][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2022-04-09 08:06:06.704][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2022-04-09 08:06:06.716][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:06.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:06.745][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:06.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.756][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.758][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.760][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.776][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.795][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.838][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.861][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.900][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.919][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.019][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2022-04-09 08:06:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.042][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2022-04-09 08:06:07.043][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:07.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2022-04-09 08:06:07.046][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:07.047][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:07.048][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:07.050][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:07.051][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:07.052][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:07.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.062][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2022-04-09 08:06:07.066][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:07.067][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:07.068][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2022-04-09 08:06:07.577][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2022-04-09 08:06:08.152][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:08.174][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2022-04-09 08:06:08.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2022-04-09 08:06:08.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2022-04-09 08:06:08.249][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:08.275][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:08.276][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:08.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.287][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.310][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.312][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.329][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.387][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.389][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.391][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.429][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.432][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.448][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.449][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.453][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.467][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.468][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.545][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2022-04-09 08:06:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.561][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:08.564][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:08.565][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:08.567][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:08.568][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:08.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.595][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:08.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.615][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:08.616][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:08.617][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:08.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.627][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.629][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.635][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:08.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:08.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.669][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:08.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:08.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:08.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.683][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.688][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:08.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:08.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.727][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:08.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:08.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:08.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.735][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.741][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:08.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.747][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:08.763][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:08.764][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:08.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:08.928][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:08.932][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:08.933][cch$loadFileContent] Trying to load 1 files from cache: [1]: "73049ee91ee5cceff4f3bc8a5644d766".
biodb.TRACE[2022-04-09 08:06:08.934][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:08.936][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.content".
biodb.DEBUG[2022-04-09 08:06:08.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.027][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:09.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.047][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:09.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:09.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:09.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.061][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.066][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:09.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:09.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.104][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.105][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:09.106][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:09.107][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:09.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.119][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:09.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-04-09 08:06:09.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.158][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:09.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:09.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:09.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.172][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.178][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:09.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-04-09 08:06:09.193][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:09.194][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:09.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:09.336][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:09.339][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:09.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d19727a9ac34aca2de50a6f942f16ddf".
biodb.TRACE[2022-04-09 08:06:09.342][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.343][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.content".
biodb.DEBUG[2022-04-09 08:06:09.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.500][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:09.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.520][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:09.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:09.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:09.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.540][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:09.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-04-09 08:06:09.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.573][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:09.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:09.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:09.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.587][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.593][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:09.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-04-09 08:06:09.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.627][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:09.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:09.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:09.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-04-09 08:06:09.666][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:09.667][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:09.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:09.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:09.807][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:09.808][cch$loadFileContent] Trying to load 1 files from cache: [1]: "bd904440f4fc2972890a98c52c563f7a".
biodb.TRACE[2022-04-09 08:06:09.810][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.811][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.content".
biodb.DEBUG[2022-04-09 08:06:09.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.836][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:09.839][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:09.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a7be5ffc012df03c41d74610ef07a76".
biodb.TRACE[2022-04-09 08:06:09.842][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.844][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.content".
biodb.DEBUG[2022-04-09 08:06:09.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.914][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:09.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.934][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:09.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:09.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:09.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.948][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:09.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.968][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-04-09 08:06:09.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.987][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:09.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:09.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:09.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:09.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.001][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.007][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-04-09 08:06:10.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.046][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:10.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:10.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:10.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.060][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.065][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:10.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-04-09 08:06:10.081][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:10.082][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:10.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.247][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:10.250][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.252][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:10.255][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.258][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:10.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.262][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:10.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.287][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.290][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.292][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:10.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.295][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:10.297][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:10.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.317][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:10.318][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:10.319][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:10.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.329][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.331][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.336][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:10.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:10.352][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:10.354][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:10.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.497][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.500][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:10.503][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.504][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:10.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.550][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.553][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:10.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.558][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:10.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.630][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:10.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.650][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:10.651][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:10.652][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:10.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.663][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.664][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:10.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:10.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.703][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:10.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:10.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:10.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.717][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.723][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:10.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:10.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.756][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:10.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:10.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:10.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.764][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.771][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.776][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:10.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:10.792][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:10.793][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:10.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.940][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.943][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:10.946][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.948][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:10.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.107][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:11.110][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:11.112][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:11.113][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:11.115][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:11.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.161][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:11.164][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:11.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:11.167][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:11.169][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:11.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.223][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:11.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.243][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.257][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.262][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.277][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:11.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.296][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.297][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.298][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.310][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.316][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:11.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.351][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.365][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.370][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.371][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:06:11.387][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:11.388][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:11.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:11.551][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:11.554][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:11.556][cch$loadFileContent] Trying to load 1 files from cache: [1]: "735359865bd435e9a652b6491588c177".
biodb.TRACE[2022-04-09 08:06:11.557][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:11.559][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.content".
biodb.DEBUG[2022-04-09 08:06:11.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.694][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:11.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.714][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.716][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.733][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:11.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.772][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.774][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.787][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.792][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-04-09 08:06:11.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.827][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.841][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.847][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-04-09 08:06:11.863][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:11.864][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:11.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.011][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:12.015][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:12.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8a541f1b4956cd259c40c32da3263881".
biodb.TRACE[2022-04-09 08:06:12.018][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.019][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.content".
biodb.DEBUG[2022-04-09 08:06:12.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.089][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:12.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.109][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:12.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:12.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:12.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.123][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:12.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:12.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.168][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:12.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:12.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:12.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.182][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.188][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:12.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:12.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.222][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:12.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:12.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:12.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.236][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:12.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.241][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:12.257][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:12.258][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:12.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:12.405][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:12.406][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2ea9078bc4e1650d61bca0cacdbcb041".
biodb.TRACE[2022-04-09 08:06:12.407][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.409][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.content".
biodb.DEBUG[2022-04-09 08:06:12.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.107][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:13.111][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:13.112][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:13.113][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:13.115][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:13.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.143][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:13.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.163][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.182][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.197][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:13.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.216][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.236][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:13.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.270][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.289][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:13.310][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:13.312][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:13.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:13.536][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:13.537][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:13.539][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:06:14.079][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:06:14.873][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:14.895][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content"
biodb.TRACE[2022-04-09 08:06:14.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.request"
biodb.DEBUG[2022-04-09 08:06:14.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:15.070][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2022-04-09 08:06:15.071][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:15.072][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2022-04-09 08:06:15.074][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:15.075][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:15.076][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:15.077][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:15.079][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:15.080][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:15.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:15.091][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2022-04-09 08:06:15.094][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:15.095][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:15.096][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2022-04-09 08:06:15.621][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2022-04-09 08:06:16.194][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:16.215][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2022-04-09 08:06:16.247][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2022-04-09 08:06:16.278][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2022-04-09 08:06:16.289][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:16.316][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:16.317][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:16.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.328][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.352][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:16.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:16.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.357][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:16.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:16.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.371][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:16.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:16.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:16.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.390][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:16.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:16.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:16.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:16.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.448][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:16.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:16.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:16.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.486][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:16.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:16.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:16.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:16.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.505][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:16.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:16.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:16.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:16.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.524][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:16.525][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:16.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:16.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:16.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.601][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2022-04-09 08:06:16.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.624][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2022-04-09 08:06:16.625][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:16.626][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2022-04-09 08:06:16.628][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:16.629][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:16.630][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:16.631][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:16.632][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:16.633][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:16.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.644][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2022-04-09 08:06:16.647][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:16.648][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:16.650][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2022-04-09 08:06:17.182][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2022-04-09 08:06:17.735][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:17.771][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2022-04-09 08:06:17.871][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2022-04-09 08:06:17.904][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2022-04-09 08:06:17.922][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:17.948][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:17.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:17.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:17.960][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.979][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.981][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.999][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:18.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:18.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:18.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:18.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:18.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:18.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:18.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:18.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.038][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:18.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.057][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:18.058][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:18.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.077][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:18.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:18.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.121][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:18.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:18.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:18.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:18.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.141][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:18.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:18.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:18.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:18.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:18.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:18.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:18.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:18.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:18.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.234][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2022-04-09 08:06:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.249][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:18.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.269][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.283][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:18.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.328][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.340][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.342][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.346][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.347][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:18.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.381][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.389][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.396][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.400][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.401][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.416][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-04-09 08:06:18.417][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:18.418][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:18.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:18.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.564][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:18.565][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:18.567][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:06:19.106][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:06:19.895][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:19.917][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.content"
biodb.TRACE[2022-04-09 08:06:19.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.request"
biodb.DEBUG[2022-04-09 08:06:19.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.975][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2022-04-09 08:06:19.976][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:19.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2022-04-09 08:06:19.979][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:19.981][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:19.982][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:19.983][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:19.984][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:19.985][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:19.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.996][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2022-04-09 08:06:19.999][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:20.000][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:20.002][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2022-04-09 08:06:20.522][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2022-04-09 08:06:21.074][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:21.095][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2022-04-09 08:06:21.138][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2022-04-09 08:06:21.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2022-04-09 08:06:21.181][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:21.206][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:21.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:21.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.218][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.237][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.320][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.321][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.325][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.339][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.344][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.376][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.399][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.487][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2022-04-09 08:06:21.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.535][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2022-04-09 08:06:21.536][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:21.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2022-04-09 08:06:21.540][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:21.541][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:21.542][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:21.543][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:21.544][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:21.545][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:21.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.556][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2022-04-09 08:06:21.559][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:21.560][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:21.562][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2022-04-09 08:06:22.212][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2022-04-09 08:06:22.756][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:22.777][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2022-04-09 08:06:22.809][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2022-04-09 08:06:22.840][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2022-04-09 08:06:22.851][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:22.876][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:22.878][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:22.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.889][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.892][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.907][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.931][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.987][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.989][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:23.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.046][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:23.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:23.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:23.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:23.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.065][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:23.067][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:23.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:23.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:23.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:23.086][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:23.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:23.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:23.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.162][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2022-04-09 08:06:23.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.198][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:23.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.217][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.237][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-04-09 08:06:23.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.270][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.284][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.290][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:23.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.328][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.340][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.342][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.346][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.347][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:23.363][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:23.364][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:23.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.502][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.505][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:23.506][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:23.508][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:06:24.047][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:06:24.619][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:24.642][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.content"
biodb.TRACE[2022-04-09 08:06:24.677][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.request"
biodb.DEBUG[2022-04-09 08:06:24.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.700][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2022-04-09 08:06:24.701][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:24.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2022-04-09 08:06:24.704][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:24.705][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:24.706][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:24.708][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:24.709][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:24.710][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:24.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.720][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2022-04-09 08:06:24.723][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:24.724][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:24.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2022-04-09 08:06:25.287][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2022-04-09 08:06:25.858][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:25.879][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2022-04-09 08:06:25.912][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2022-04-09 08:06:25.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2022-04-09 08:06:25.956][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:25.988][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:25.989][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:25.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.000][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.019][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.020][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.078][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.099][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.103][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.138][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.162][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.163][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.184][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.373][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2022-04-09 08:06:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:26.395][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2022-04-09 08:06:26.396][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:26.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2022-04-09 08:06:26.400][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:26.401][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:26.402][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:26.403][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:26.404][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:26.405][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:26.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:26.416][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2022-04-09 08:06:26.419][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:26.420][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:26.421][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2022-04-09 08:06:26.950][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2022-04-09 08:06:27.512][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:27.532][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2022-04-09 08:06:27.564][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2022-04-09 08:06:27.604][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2022-04-09 08:06:27.615][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:27.640][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:27.642][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:27.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.652][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.653][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.671][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.674][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.689][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.728][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.745][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.746][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.750][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:27.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.754][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:27.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.776][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.793][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.812][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:27.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:27.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.830][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.831][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.902][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2022-04-09 08:06:27.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:27.924][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2022-04-09 08:06:27.925][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:27.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2022-04-09 08:06:27.928][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:27.929][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:27.930][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:27.931][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:27.932][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:27.933][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:27.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:27.944][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2022-04-09 08:06:27.947][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:27.948][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:27.954][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2022-04-09 08:06:28.482][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2022-04-09 08:06:29.045][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:29.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2022-04-09 08:06:29.110][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2022-04-09 08:06:29.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2022-04-09 08:06:29.154][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:29.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:29.182][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:29.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.193][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.212][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.213][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:29.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:29.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.232][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:29.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:29.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.299][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.300][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:29.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.303][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.305][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.339][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.357][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:29.359][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:29.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:29.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.447][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2022-04-09 08:06:29.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:29.475][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2022-04-09 08:06:29.476][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:29.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2022-04-09 08:06:29.479][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:29.480][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:29.481][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:29.483][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:29.484][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:29.485][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:29.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:29.495][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2022-04-09 08:06:29.498][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:29.499][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:29.501][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2022-04-09 08:06:30.053][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2022-04-09 08:06:30.608][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:30.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2022-04-09 08:06:30.661][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2022-04-09 08:06:30.692][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2022-04-09 08:06:30.704][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:30.730][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:30.731][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:30.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.742][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.761][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.785][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.861][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:30.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.865][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.866][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:30.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.884][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.899][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.919][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:30.920][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.938][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.017][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2022-04-09 08:06:31.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.053][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:31.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.073][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.086][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.092][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-04-09 08:06:31.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.125][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.139][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.154][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.169][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-04-09 08:06:31.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.188][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.207][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-04-09 08:06:31.223][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:31.224][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:31.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:31.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:31.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:31.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.392][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:31.395][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:31.398][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:31.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:31.401][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.402][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:31.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.468][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:31.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.488][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.502][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.507][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.526][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:31.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.545][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.559][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.564][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.578][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:31.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.596][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.598][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.610][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.615][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.630][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:31.631][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:31.632][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:31.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.772][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:31.776][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:31.777][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:31.778][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.780][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:31.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.845][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:31.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.865][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.867][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.879][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.884][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:31.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.923][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.924][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.936][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.942][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:31.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.975][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.989][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.994][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.009][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:32.010][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:32.011][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:32.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:32.151][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:32.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:32.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:32.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:32.158][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:32.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.226][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:32.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.246][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.260][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.265][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:32.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.304][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.312][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.323][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:06:32.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.357][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.376][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:06:32.391][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:32.392][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:32.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:32.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:32.555][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:32.556][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:32.558][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:06:33.557][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:06:34.103][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:34.124][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.content"
biodb.TRACE[2022-04-09 08:06:34.302][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.request"
biodb.DEBUG[2022-04-09 08:06:34.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.374][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2022-04-09 08:06:34.375][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:34.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2022-04-09 08:06:34.378][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:34.379][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:34.380][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:34.381][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:34.382][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:34.383][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:34.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.394][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2022-04-09 08:06:34.397][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:34.398][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:34.399][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2022-04-09 08:06:34.929][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2022-04-09 08:06:35.492][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:35.514][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2022-04-09 08:06:35.547][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2022-04-09 08:06:35.580][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2022-04-09 08:06:35.591][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:35.618][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:35.619][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:35.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.650][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.651][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.675][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.677][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.733][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.752][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.791][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.810][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.811][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.829][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.831][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.909][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2022-04-09 08:06:35.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:35.931][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2022-04-09 08:06:35.932][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:35.934][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2022-04-09 08:06:35.935][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:35.937][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:35.938][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:35.939][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:35.940][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:35.941][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:35.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:35.952][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2022-04-09 08:06:35.955][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:35.956][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:35.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2022-04-09 08:06:36.777][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2022-04-09 08:06:37.376][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:37.397][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2022-04-09 08:06:37.429][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2022-04-09 08:06:37.461][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2022-04-09 08:06:37.473][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:37.506][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:37.508][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:37.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:37.519][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.539][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.540][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.558][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.637][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.681][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.682][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.702][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.720][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.722][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.794][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2022-04-09 08:06:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:37.817][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2022-04-09 08:06:37.819][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:37.820][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2022-04-09 08:06:37.822][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:37.823][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:37.825][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:37.826][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:37.827][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:37.828][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:37.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:37.840][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2022-04-09 08:06:37.843][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:37.844][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:37.846][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2022-04-09 08:06:38.366][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2022-04-09 08:06:38.918][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:38.939][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2022-04-09 08:06:38.980][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2022-04-09 08:06:39.011][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2022-04-09 08:06:39.023][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:39.049][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:39.050][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:39.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.061][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.080][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:39.081][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:39.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.099][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:39.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:39.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:39.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:39.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:39.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:39.139][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:39.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:39.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:39.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.180][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:39.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:39.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.184][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:39.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.218][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:39.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:39.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:39.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:39.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:39.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.255][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:39.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:39.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:39.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:39.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:39.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:39.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.327][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2022-04-09 08:06:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:39.354][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2022-04-09 08:06:39.355][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:39.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2022-04-09 08:06:39.358][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:39.360][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:39.361][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:39.362][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:39.363][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:39.364][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:39.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:39.375][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2022-04-09 08:06:39.378][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:39.379][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:39.380][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2022-04-09 08:06:39.929][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2022-04-09 08:06:40.522][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:40.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2022-04-09 08:06:40.578][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2022-04-09 08:06:40.611][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2022-04-09 08:06:40.623][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:40.649][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:40.651][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:40.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.662][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.688][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:40.689][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:40.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.708][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:40.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:40.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:40.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:40.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:40.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:40.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:40.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:40.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:40.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:40.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.765][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:40.766][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:40.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.784][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:40.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:40.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.823][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:40.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:40.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:40.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:40.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.843][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:40.844][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:40.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:40.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:40.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.945][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2022-04-09 08:06:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:40.967][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2022-04-09 08:06:40.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:40.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2022-04-09 08:06:40.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:40.973][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:40.974][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:40.975][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:40.976][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:40.977][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:40.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:40.989][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2022-04-09 08:06:40.992][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:40.993][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:40.995][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2022-04-09 08:06:41.524][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2022-04-09 08:06:42.097][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:42.118][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2022-04-09 08:06:42.151][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2022-04-09 08:06:42.182][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2022-04-09 08:06:42.194][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:42.227][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:42.228][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:42.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.239][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.258][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.259][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.277][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.278][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.334][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.339][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:42.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.344][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:42.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.377][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.403][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:42.404][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.497][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2022-04-09 08:06:42.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.534][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:42.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.554][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:42.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:42.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:42.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.568][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.574][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:42.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.613][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:42.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:42.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:42.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.628][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.633][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:42.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.667][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:42.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:42.669][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:42.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:42.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.687][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:42.703][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:42.704][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:42.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:42.846][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:42.850][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:42.851][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:42.853][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-09 08:06:43.361][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-09 08:06:44.168][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:44.189][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.content"
biodb.TRACE[2022-04-09 08:06:44.221][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.request"
biodb.DEBUG[2022-04-09 08:06:44.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:44.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:44.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:44.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:44.289][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2022-04-09 08:06:44.290][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:44.292][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2022-04-09 08:06:44.294][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:44.295][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:44.296][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:44.297][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:44.303][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:44.306][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:44.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:44.318][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2022-04-09 08:06:44.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:44.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:44.324][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2022-04-09 08:06:44.859][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2022-04-09 08:06:45.423][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:45.453][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2022-04-09 08:06:45.484][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2022-04-09 08:06:45.513][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2022-04-09 08:06:45.524][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:45.549][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:45.550][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:45.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:45.561][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.579][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.658][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.661][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:45.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.697][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.716][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:45.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.734][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.735][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:45.812][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2022-04-09 08:06:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:45.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:45.834][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2022-04-09 08:06:45.835][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:45.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2022-04-09 08:06:45.839][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:45.840][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:45.841][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:45.842][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:45.843][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:45.844][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:45.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:45.854][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2022-04-09 08:06:45.857][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:45.858][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:45.860][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2022-04-09 08:06:46.368][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2022-04-09 08:06:46.925][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:46.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2022-04-09 08:06:46.979][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2022-04-09 08:06:47.010][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2022-04-09 08:06:47.021][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:47.047][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:47.049][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:47.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:47.064][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.084][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.102][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.163][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:47.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.201][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.221][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:47.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:47.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:47.319][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2022-04-09 08:06:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:47.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:47.342][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2022-04-09 08:06:47.343][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:47.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2022-04-09 08:06:47.346][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:47.347][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:47.348][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:47.350][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:47.351][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:47.352][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:47.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:47.362][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2022-04-09 08:06:47.365][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:47.366][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:47.368][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2022-04-09 08:06:47.867][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2022-04-09 08:06:48.421][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:48.441][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2022-04-09 08:06:48.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2022-04-09 08:06:48.509][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2022-04-09 08:06:48.522][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:48.546][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:48.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:48.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:48.558][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.576][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.594][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.595][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.654][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:48.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.659][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.696][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.714][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:48.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:48.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.734][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:48.804][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2022-04-09 08:06:48.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:48.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:48.825][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2022-04-09 08:06:48.827][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:48.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2022-04-09 08:06:48.830][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:48.831][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:48.832][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:48.833][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:48.834][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:48.835][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:48.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:48.846][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2022-04-09 08:06:48.849][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:48.850][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:48.851][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2022-04-09 08:06:49.371][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2022-04-09 08:06:49.908][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:49.929][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2022-04-09 08:06:49.973][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2022-04-09 08:06:50.006][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2022-04-09 08:06:50.018][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:50.044][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:50.046][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:50.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:50.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:50.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:50.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:50.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:50.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:50.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:50.057][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.077][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.095][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.115][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.161][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:50.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.197][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.215][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:50.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:50.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:50.305][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2022-04-09 08:06:50.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:50.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:50.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:50.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:50.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:50.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:50.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:50.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:50.457][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2022-04-09 08:06:50.458][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:50.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2022-04-09 08:06:50.461][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:50.462][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:50.463][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:50.464][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:50.465][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:50.466][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:50.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:50.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:50.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:50.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:50.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:50.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:50.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:50.477][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2022-04-09 08:06:50.480][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:50.481][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:50.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2022-04-09 08:06:51.025][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2022-04-09 08:06:52.490][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:52.513][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2022-04-09 08:06:52.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2022-04-09 08:06:52.579][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2022-04-09 08:06:52.591][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:52.617][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:52.618][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:52.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:52.630][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.649][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.668][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.729][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.734][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:52.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.772][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.791][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:52.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:52.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.810][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.811][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:52.888][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2022-04-09 08:06:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:52.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:52.910][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2022-04-09 08:06:52.911][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:52.913][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2022-04-09 08:06:52.914][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:52.916][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:52.917][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:52.918][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:52.919][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:52.920][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:52.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:52.931][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2022-04-09 08:06:52.934][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:52.935][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:52.937][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2022-04-09 08:06:53.437][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2022-04-09 08:06:53.991][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:54.012][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2022-04-09 08:06:54.044][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2022-04-09 08:06:54.076][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2022-04-09 08:06:54.087][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:54.114][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:54.115][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:54.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:54.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:54.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:54.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:54.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:54.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:54.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:54.126][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.148][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.167][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.189][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.227][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:54.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.264][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.283][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:54.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:54.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:54.378][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2022-04-09 08:06:54.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:54.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:54.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:54.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:54.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:54.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:54.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:54.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:54.400][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2022-04-09 08:06:54.401][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:54.403][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2022-04-09 08:06:54.405][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:54.406][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:54.407][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:54.408][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:54.409][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:54.410][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:54.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:54.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:54.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:54.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:54.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:54.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:54.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:54.421][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2022-04-09 08:06:54.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:54.425][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:54.427][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2022-04-09 08:06:54.932][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2022-04-09 08:06:55.494][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:55.514][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2022-04-09 08:06:55.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2022-04-09 08:06:55.579][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2022-04-09 08:06:55.590][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:55.622][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:55.623][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:55.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:55.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:55.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:55.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:55.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:55.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:55.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:55.634][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.652][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:55.654][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:55.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:55.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:55.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.671][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:55.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:55.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:55.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:55.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:55.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:55.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:55.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:55.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:55.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:55.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:55.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:55.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:55.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.732][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:55.734][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:55.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.737][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:55.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:55.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.770][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:55.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:55.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.789][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:55.791][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:55.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.794][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.812][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:55.813][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:55.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:55.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:55.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:55.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:55.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:55.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:55.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:55.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:55.884][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2022-04-09 08:06:55.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:55.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:55.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:55.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:55.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:55.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:55.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:55.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:55.906][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2022-04-09 08:06:55.907][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:55.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2022-04-09 08:06:55.910][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:55.911][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:55.912][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:55.913][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:55.914][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:55.915][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:55.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:55.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:55.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:55.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:55.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:55.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:55.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:55.926][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2022-04-09 08:06:55.929][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:55.930][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:55.932][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2022-04-09 08:06:56.466][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2022-04-09 08:06:57.036][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:57.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2022-04-09 08:06:57.089][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2022-04-09 08:06:57.126][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2022-04-09 08:06:57.137][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:57.162][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:57.164][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:57.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:57.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:57.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:57.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:57.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:57.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:57.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:57.174][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.193][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:57.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:57.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.212][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:57.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:57.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:57.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:57.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:57.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:57.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:57.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:57.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.270][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:57.271][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:57.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.274][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:57.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:57.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.317][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:57.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:57.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.336][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:57.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:57.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.355][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:57.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:57.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:57.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:57.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:57.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:57.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:57.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:57.427][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2022-04-09 08:06:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:57.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:57.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:57.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:57.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:57.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:57.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:57.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:57.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:57.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:57.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:57.450][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2022-04-09 08:06:57.451][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:57.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2022-04-09 08:06:57.454][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:57.455][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:57.456][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:57.457][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:57.459][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:57.460][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:57.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:57.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:57.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:57.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:57.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:57.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:57.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:57.470][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2022-04-09 08:06:57.474][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:57.475][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:57.476][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2022-04-09 08:06:58.028][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2022-04-09 08:06:58.583][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:58.605][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2022-04-09 08:06:58.647][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2022-04-09 08:06:58.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2022-04-09 08:06:58.691][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:06:58.717][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:58.718][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:58.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:58.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:58.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:58.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:58.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:58.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:58.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:58.729][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.749][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:58.750][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:58.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:58.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.769][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:58.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:58.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:58.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:58.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:58.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:58.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:58.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.796][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.797][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:58.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:58.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.802][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:58.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:58.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.844][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:58.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:58.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:58.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:58.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.864][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:58.865][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:58.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.869][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:58.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:58.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.883][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:58.884][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:58.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:58.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:58.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:58.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:58.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:58.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:58.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:58.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:58.956][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2022-04-09 08:06:58.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:58.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:58.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:58.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:58.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:58.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:58.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:58.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:58.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:58.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:58.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:58.978][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2022-04-09 08:06:58.979][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:58.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2022-04-09 08:06:58.982][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:06:58.984][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:06:58.985][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:58.986][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:58.987][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:06:58.988][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:06:58.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:58.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:58.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:58.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:58.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:58.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:58.999][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2022-04-09 08:06:59.002][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:59.003][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:59.005][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2022-04-09 08:06:59.539][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2022-04-09 08:07:00.104][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:00.126][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2022-04-09 08:07:00.168][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2022-04-09 08:07:00.200][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2022-04-09 08:07:00.211][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:00.237][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:00.238][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:00.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:00.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:00.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:00.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:00.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:00.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:00.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:00.249][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.269][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:00.270][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:00.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.288][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:00.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:00.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:00.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:00.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:00.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:00.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:00.314][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:00.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:00.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:00.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.322][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:00.323][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:00.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:00.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.365][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:00.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:00.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:00.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:00.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.385][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:00.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:00.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:00.405][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:00.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:00.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:00.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:00.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:00.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:00.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:00.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:00.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:00.477][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2022-04-09 08:07:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:00.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:00.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:00.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:00.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:00.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:00.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:00.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:00.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:00.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:00.500][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2022-04-09 08:07:00.501][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:00.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2022-04-09 08:07:00.504][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:00.506][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:00.507][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:00.508][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:00.509][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:00.510][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:00.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:00.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:00.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:00.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:00.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:00.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:00.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:00.521][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2022-04-09 08:07:00.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:00.529][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:00.531][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2022-04-09 08:07:01.137][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2022-04-09 08:07:01.712][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:01.741][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2022-04-09 08:07:01.773][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2022-04-09 08:07:01.803][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2022-04-09 08:07:01.815][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:01.840][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:01.842][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:01.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:01.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:01.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:01.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:01.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:01.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:01.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:01.852][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:01.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:01.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:01.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.871][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:01.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:01.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:01.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:01.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.890][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:01.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:01.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:01.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:01.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.909][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:01.910][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:01.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:01.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:01.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.934][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:01.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:01.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:01.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:01.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.958][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:01.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:01.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.963][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:01.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:01.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:01.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:01.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.981][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:01.996][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:01.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:01.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:02.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:02.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.016][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:02.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:02.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:02.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:02.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:02.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:02.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:02.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:02.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:02.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:02.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:02.110][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2022-04-09 08:07:02.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:02.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:02.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:02.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:02.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:02.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:02.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:02.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:02.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:02.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:02.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:02.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:02.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:02.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:02.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:02.137][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2022-04-09 08:07:02.139][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:02.140][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2022-04-09 08:07:02.142][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:02.143][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:02.144][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:02.145][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:02.146][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:02.147][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:02.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:02.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:02.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:02.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:02.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:02.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:02.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:02.158][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2022-04-09 08:07:02.162][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:02.163][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:02.164][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2022-04-09 08:07:02.700][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2022-04-09 08:07:03.299][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:03.320][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2022-04-09 08:07:03.353][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2022-04-09 08:07:03.385][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2022-04-09 08:07:03.396][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:03.422][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:03.423][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:03.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:03.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:03.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:03.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:03.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:03.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:03.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:03.435][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.453][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:03.455][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:03.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:03.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.478][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:03.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:03.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:03.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:03.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:03.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:03.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:03.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.534][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:03.535][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:03.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.539][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:03.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:03.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:03.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:03.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.576][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:03.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:03.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:03.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:03.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.595][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:03.597][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:03.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:03.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.614][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:03.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:03.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:03.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:03.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:03.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:03.692][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2022-04-09 08:07:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:03.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:03.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:03.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:03.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:03.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:03.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:03.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:03.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:03.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:03.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:03.714][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2022-04-09 08:07:03.715][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:03.717][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2022-04-09 08:07:03.719][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:03.720][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:03.721][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:03.722][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:03.723][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:03.724][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:03.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:03.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:03.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:03.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:03.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:03.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:03.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:03.735][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2022-04-09 08:07:03.738][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:03.739][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:03.741][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2022-04-09 08:07:04.266][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2022-04-09 08:07:04.838][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:04.860][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2022-04-09 08:07:04.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2022-04-09 08:07:04.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2022-04-09 08:07:04.938][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:04.964][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:04.966][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:04.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:04.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:04.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:04.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:04.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:04.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:04.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:04.981][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:04.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:04.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:04.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:04.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:04.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.001][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:05.002][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:05.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.005][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:05.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.021][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:05.022][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:05.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:05.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:05.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:05.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:05.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:05.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:05.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:05.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:05.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.078][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:05.079][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:05.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.082][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:05.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:05.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.120][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:05.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:05.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:05.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:05.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.139][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:05.141][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:05.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:05.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:05.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:05.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:05.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:05.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:05.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:05.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:05.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:05.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:05.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:05.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:05.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:05.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:05.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:05.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:05.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:05.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:05.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:05.236][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2022-04-09 08:07:05.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:05.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:05.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:05.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:05.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:05.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:05.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:05.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:05.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:05.259][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2022-04-09 08:07:05.260][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:05.261][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2022-04-09 08:07:05.263][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:05.264][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:05.265][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:05.266][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:05.268][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:05.269][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:05.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:05.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:05.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:05.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:05.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:05.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:05.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:05.280][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2022-04-09 08:07:05.283][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:05.284][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:05.286][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2022-04-09 08:07:05.813][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2022-04-09 08:07:06.375][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:06.396][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2022-04-09 08:07:06.429][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2022-04-09 08:07:06.461][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2022-04-09 08:07:06.473][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:06.505][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:06.506][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:06.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:06.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:06.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:06.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:06.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:06.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:06.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:06.517][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.535][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:06.537][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:06.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:06.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.554][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:06.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:06.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:06.574][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:06.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:06.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:06.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:06.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:06.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:06.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:06.613][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:06.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.616][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:06.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:06.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.621][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:06.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:06.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.654][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:06.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:06.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.678][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:06.679][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:06.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:06.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:06.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:06.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:06.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:06.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:06.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:06.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:06.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:06.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:06.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:06.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:06.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:06.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:06.768][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2022-04-09 08:07:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:06.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:06.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:06.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:06.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:06.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:06.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:06.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:06.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:06.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:06.790][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2022-04-09 08:07:06.791][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:06.793][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2022-04-09 08:07:06.794][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:06.796][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:06.797][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:06.798][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:06.799][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:06.800][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:06.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:06.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:06.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:06.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:06.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:06.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:06.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:06.811][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2022-04-09 08:07:06.814][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:06.815][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:06.817][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2022-04-09 08:07:07.354][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2022-04-09 08:07:07.917][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:07.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2022-04-09 08:07:07.971][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2022-04-09 08:07:08.011][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2022-04-09 08:07:08.022][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:08.048][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:08.049][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:08.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:08.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:08.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:08.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:08.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:08.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:08.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:08.060][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.079][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:08.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:08.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:08.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:08.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.098][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:08.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:08.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:08.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:08.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:08.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:08.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:08.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:08.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:08.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:08.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.155][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:08.156][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:08.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.159][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:08.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:08.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.183][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.202][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:08.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:08.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:08.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:08.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.222][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:08.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:08.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:08.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:08.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:08.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:08.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:08.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:08.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:08.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:08.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:08.314][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2022-04-09 08:07:08.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:08.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:08.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:08.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:08.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:08.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:08.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:08.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:08.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:08.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:08.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:08.337][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2022-04-09 08:07:08.338][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:08.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2022-04-09 08:07:08.342][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:08.343][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:08.344][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:08.345][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:08.346][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:08.347][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:08.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:08.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:08.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:08.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:08.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:08.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:08.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:08.358][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2022-04-09 08:07:08.362][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:08.363][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:08.364][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2022-04-09 08:07:08.880][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2022-04-09 08:07:09.454][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:09.476][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2022-04-09 08:07:09.518][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2022-04-09 08:07:09.551][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2022-04-09 08:07:09.562][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:09.588][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:09.590][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:09.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:09.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:09.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:09.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:09.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:09.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:09.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:09.601][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.620][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:09.621][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:09.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.640][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:09.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:09.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:09.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:09.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:09.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:09.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.663][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:09.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:09.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:09.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:09.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.702][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:09.704][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:09.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.707][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:09.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:09.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.710][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:09.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.729][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.745][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:09.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:09.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:09.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:09.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.764][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:09.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:09.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:09.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.783][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:09.785][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:09.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:09.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:09.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:09.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:09.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:09.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:09.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:09.857][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2022-04-09 08:07:09.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:09.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:09.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:09.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:09.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:09.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:09.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:09.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:09.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:09.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:09.884][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2022-04-09 08:07:09.885][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:09.887][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2022-04-09 08:07:09.888][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:09.889][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:09.891][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:09.892][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:09.893][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:09.894][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:09.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:09.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:09.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:09.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:09.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:09.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:09.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:09.905][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2022-04-09 08:07:09.908][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:09.909][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:09.911][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2022-04-09 08:07:10.443][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2022-04-09 08:07:11.003][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:11.024][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2022-04-09 08:07:11.057][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2022-04-09 08:07:11.090][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2022-04-09 08:07:11.102][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:11.129][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:11.131][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:11.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:11.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:11.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:11.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:11.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:11.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:11.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:11.142][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.162][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:11.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:11.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:11.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.186][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:11.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:11.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.189][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:11.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:11.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:11.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:11.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:11.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:11.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:11.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:11.246][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:11.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.250][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:11.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:11.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.254][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:11.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:11.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.288][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:11.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:11.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.307][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:11.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:11.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:11.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:11.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:11.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:11.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:11.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:11.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:11.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:11.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:11.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:11.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:11.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:11.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:11.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:11.405][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2022-04-09 08:07:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:11.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:11.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:11.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:11.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:11.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:11.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:11.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:11.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:11.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:11.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:11.428][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2022-04-09 08:07:11.429][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:11.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2022-04-09 08:07:11.432][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:11.433][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:11.435][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:11.436][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:11.437][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:11.438][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:11.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:11.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:11.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:11.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:11.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:11.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:11.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:11.449][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2022-04-09 08:07:11.452][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:11.453][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:11.455][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2022-04-09 08:07:11.967][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2022-04-09 08:07:12.572][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:12.595][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2022-04-09 08:07:12.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2022-04-09 08:07:12.660][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2022-04-09 08:07:12.672][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:12.705][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:12.707][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:12.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:12.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:12.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:12.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:12.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:12.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:12.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:12.718][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.737][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:12.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:12.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.757][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:12.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:12.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.760][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:12.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:12.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:12.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:12.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:12.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.798][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:12.815][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:12.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.819][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:12.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:12.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.822][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:12.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.858][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:12.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:12.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.878][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:12.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:12.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:12.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:12.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:12.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:12.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.907][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:12.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:12.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:12.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:12.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:12.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:12.976][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2022-04-09 08:07:12.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:12.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:12.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:12.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:12.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:12.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:12.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:12.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:12.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:12.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:12.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:12.998][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2022-04-09 08:07:12.999][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:13.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2022-04-09 08:07:13.002][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:13.004][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:13.005][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:13.006][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:13.007][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:13.008][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:13.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:13.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:13.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:13.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:13.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:13.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:13.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:13.019][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2022-04-09 08:07:13.022][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:13.023][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:13.024][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2022-04-09 08:07:13.586][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2022-04-09 08:07:14.260][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:14.283][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2022-04-09 08:07:14.317][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2022-04-09 08:07:14.357][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2022-04-09 08:07:14.370][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:14.397][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:14.398][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:14.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:14.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:14.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:14.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:14.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:14.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:14.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:14.410][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.429][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:14.430][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:14.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.432][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:14.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.446][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:14.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:14.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:14.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:14.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:14.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:14.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:14.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:14.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:14.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:14.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:14.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:14.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:14.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.507][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:14.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:14.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.512][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:14.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:14.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.527][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.551][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:14.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:14.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:14.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:14.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.571][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:14.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:14.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.576][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:14.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:14.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:14.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:14.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:14.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:14.665][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2022-04-09 08:07:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:14.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:14.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:14.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:14.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:14.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:14.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:14.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:14.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:14.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:14.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:14.688][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2022-04-09 08:07:14.689][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:14.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2022-04-09 08:07:14.692][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:14.694][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:14.695][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:14.696][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:14.697][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:14.698][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:14.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:14.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:14.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:14.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:14.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:14.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:14.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:14.709][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2022-04-09 08:07:14.713][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:14.714][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:14.715][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2022-04-09 08:07:15.237][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2022-04-09 08:07:15.824][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:15.845][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2022-04-09 08:07:15.887][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2022-04-09 08:07:15.919][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2022-04-09 08:07:15.930][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:15.956][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:15.958][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:15.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:15.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:15.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:15.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:15.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:15.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:15.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:15.969][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:15.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:15.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:15.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:15.988][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:15.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:15.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:15.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:15.993][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:15.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:15.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:15.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.007][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:16.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:16.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:16.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.027][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:16.028][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:16.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:16.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:16.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:16.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:16.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:16.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:16.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:16.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:16.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.075][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:16.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:16.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.078][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.080][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:16.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:16.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.114][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:16.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:16.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:16.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:16.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:16.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:16.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:16.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.153][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:16.154][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:16.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:16.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:16.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:16.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:16.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:16.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:16.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:16.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:16.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:16.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:16.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:16.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:16.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:16.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:16.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:16.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:16.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:16.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:16.227][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2022-04-09 08:07:16.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:16.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:16.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:16.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:16.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:16.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:16.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:16.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:16.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:16.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:16.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:16.249][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2022-04-09 08:07:16.251][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:16.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2022-04-09 08:07:16.254][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:16.255][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:16.256][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:16.257][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:16.258][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:16.263][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:16.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:16.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:16.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:16.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:16.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:16.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:16.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:16.275][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2022-04-09 08:07:16.278][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:16.279][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:16.280][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2022-04-09 08:07:16.800][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2022-04-09 08:07:17.444][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:17.475][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2022-04-09 08:07:17.508][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2022-04-09 08:07:17.540][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2022-04-09 08:07:17.552][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:17.578][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:17.580][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:17.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:17.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:17.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:17.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:17.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:17.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:17.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:17.591][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.610][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:17.612][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:17.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:17.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.630][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:17.631][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:17.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:17.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:17.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:17.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:17.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:17.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:17.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:17.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:17.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:17.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:17.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.692][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:17.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:17.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.697][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:17.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:17.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:17.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:17.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.735][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:17.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:17.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:17.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.755][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:17.756][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:17.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.759][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.774][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:17.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:17.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:17.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:17.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:17.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:17.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:17.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:17.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:17.854][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2022-04-09 08:07:17.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:17.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:17.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:17.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:17.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:17.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:17.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:17.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:17.876][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2022-04-09 08:07:17.877][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:17.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2022-04-09 08:07:17.880][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:17.882][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:17.883][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:17.884][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:17.885][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:17.886][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:17.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:17.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:17.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:17.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:17.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:17.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:17.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:17.897][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2022-04-09 08:07:17.900][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:17.902][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:17.903][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2022-04-09 08:07:18.977][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2022-04-09 08:07:19.597][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:19.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2022-04-09 08:07:19.653][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2022-04-09 08:07:19.686][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2022-04-09 08:07:19.698][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:19.725][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:19.727][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:19.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:19.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:19.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:19.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:19.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:19.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:19.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:19.738][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.762][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:19.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:19.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:19.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.781][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:19.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:19.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:19.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:19.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:19.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:19.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:19.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:19.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:19.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:19.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.839][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:19.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:19.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.844][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:19.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:19.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.849][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:19.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:19.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:19.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:19.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:19.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.883][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:19.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:19.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.902][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:19.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:19.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:19.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:19.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:19.923][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:19.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.926][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:19.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:19.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:19.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:19.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:19.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:19.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:19.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:19.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:19.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:20.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:20.001][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2022-04-09 08:07:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:20.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:20.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:20.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:20.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:20.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:20.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:20.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:20.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:20.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:20.024][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2022-04-09 08:07:20.025][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:20.027][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2022-04-09 08:07:20.028][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:20.030][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:20.031][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:20.032][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:20.033][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:20.034][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:20.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:20.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:20.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:20.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:20.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:20.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:20.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:20.045][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2022-04-09 08:07:20.048][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:20.049][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:20.051][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2022-04-09 08:07:20.728][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2022-04-09 08:07:21.291][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:21.312][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2022-04-09 08:07:21.346][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2022-04-09 08:07:21.379][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2022-04-09 08:07:21.391][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:21.424][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:21.426][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:21.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:21.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:21.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:21.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:21.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:21.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:21.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:21.437][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.456][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:21.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:21.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:21.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.475][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:21.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:21.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:21.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:21.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:21.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:21.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:21.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.514][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:21.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:21.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:21.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.534][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:21.535][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:21.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.538][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:21.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:21.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.577][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:21.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:21.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:21.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.601][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:21.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:21.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:21.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:21.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:21.622][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:21.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:21.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:21.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:21.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:21.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:21.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:21.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:21.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:21.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:21.695][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2022-04-09 08:07:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:21.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:21.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:21.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:21.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:21.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:21.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:21.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:21.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:21.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:21.717][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2022-04-09 08:07:21.718][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:21.720][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2022-04-09 08:07:21.721][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:21.722][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:21.724][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:21.725][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:21.726][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:21.727][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:21.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:21.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:21.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:21.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:21.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:21.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:21.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:21.738][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2022-04-09 08:07:21.741][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:21.742][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:21.744][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2022-04-09 08:07:22.281][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2022-04-09 08:07:22.833][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:22.856][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2022-04-09 08:07:22.900][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2022-04-09 08:07:22.933][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2022-04-09 08:07:22.945][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:22.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:22.973][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:22.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:22.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:22.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:22.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:22.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:22.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:22.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:22.984][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:22.985][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:22.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:22.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:22.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:22.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.003][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:23.004][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:23.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:23.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:23.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.023][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:23.024][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:23.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:23.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:23.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:23.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:23.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:23.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:23.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:23.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:23.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:23.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:23.089][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:23.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.093][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:23.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:23.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.132][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:23.133][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:23.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.151][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:23.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:23.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:23.171][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:23.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:23.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:23.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:23.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:23.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:23.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:23.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:23.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:23.244][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2022-04-09 08:07:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:23.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:23.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:23.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:23.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:23.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:23.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:23.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:23.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:23.267][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2022-04-09 08:07:23.268][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:23.270][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2022-04-09 08:07:23.271][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:23.273][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:23.274][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:23.275][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:23.276][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:23.277][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:23.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:23.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:23.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:23.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:23.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:23.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:23.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:23.293][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2022-04-09 08:07:23.297][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:23.298][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:23.299][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2022-04-09 08:07:23.802][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2022-04-09 08:07:24.339][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:24.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2022-04-09 08:07:24.403][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2022-04-09 08:07:24.435][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2022-04-09 08:07:24.447][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:24.473][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:24.474][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:24.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:24.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:24.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:24.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:24.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:24.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:24.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:24.485][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.505][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:24.506][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:24.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.524][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:24.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:24.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:24.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:24.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:24.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:24.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:24.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:24.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.587][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:24.588][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:24.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:24.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:24.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.605][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:24.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:24.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:24.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.627][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.642][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:24.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:24.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:24.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:24.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.661][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:24.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:24.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:24.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:24.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:24.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:24.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:24.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:24.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:24.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:24.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:24.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:24.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:24.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:24.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:24.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:24.760][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2022-04-09 08:07:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:24.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:24.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:24.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:24.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:24.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:24.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:24.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:24.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:24.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:24.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:24.783][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2022-04-09 08:07:24.784][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:24.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2022-04-09 08:07:24.787][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-09 08:07:24.788][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-09 08:07:24.789][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:24.790][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:07:24.791][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-09 08:07:24.793][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-09 08:07:24.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:24.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:24.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:24.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:24.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:24.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:24.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:24.803][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2022-04-09 08:07:24.807][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:24.808][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:24.809][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2022-04-09 08:07:25.315][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2022-04-09 08:07:25.890][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:25.912][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2022-04-09 08:07:25.945][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2022-04-09 08:07:25.978][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2022-04-09 08:07:25.990][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-09 08:07:26.017][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:26.018][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:07:26.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.029][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.053][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:26.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:26.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:26.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.073][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:26.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:26.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:26.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:26.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:26.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:26.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:26.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:26.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:26.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.131][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:26.132][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:26.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.135][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:26.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:26.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:07:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.174][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:26.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:26.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:26.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:26.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:07:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.213][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:26.214][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:26.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:26.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:26.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:26.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:26.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.292][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2022-04-09 08:07:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:26.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.370][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.385][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.391][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.407][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:07:26.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.514][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.528][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.534][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:26.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:07:26.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.568][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.582][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.588][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:26.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:07:26.604][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:26.605][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:26.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:26.748][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:26.751][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:26.753][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:07:26.754][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:26.756][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:07:26.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.848][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:26.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.868][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.892][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:26.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.907][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:07:26.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.926][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.940][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:26.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:07:26.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.980][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.982][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.994][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:26.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:26.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.999][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:27.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:07:27.015][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:27.016][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:27.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:27.183][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:27.186][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:27.187][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:07:27.189][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:27.190][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:07:27.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.354][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:27.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.374][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.388][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.394][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.409][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:07:27.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.428][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.436][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.442][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.448][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.469][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:07:27.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.488][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.502][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-04-09 08:07:27.523][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:27.524][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:27.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:27.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:27.671][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:27.672][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d5104bb979c9ec31aa9634ac7a986155".
biodb.TRACE[2022-04-09 08:07:27.674][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:27.675][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.content".
biodb.DEBUG[2022-04-09 08:07:27.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:27.768][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:27.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.787][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.788][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:27.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-04-09 08:07:27.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.846][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.860][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.865][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.880][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:07:27.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.900][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.914][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:27.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.920][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:27.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:07:27.936][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:27.937][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:27.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:28.083][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:28.086][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:28.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "beb9d154bf0d4e4f372dd6176fab59e2".
biodb.TRACE[2022-04-09 08:07:28.089][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:28.090][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.content".
biodb.DEBUG[2022-04-09 08:07:28.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.202][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:28.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.227][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:28.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:28.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:28.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.241][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:28.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-04-09 08:07:28.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.281][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:28.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:28.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:28.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.301][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:28.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-04-09 08:07:28.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.335][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:28.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:28.337][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:28.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.350][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.354][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:28.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.370][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-04-09 08:07:28.371][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:28.373][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:28.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:28.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:28.545][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:28.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:07:28.548][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:28.549][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:07:28.553][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:28.556][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:28.557][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:07:28.559][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:28.560][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:07:28.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.634][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:28.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.654][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:28.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:28.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:28.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.666][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:28.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.688][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:07:28.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.708][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:28.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:28.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:28.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.722][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.728][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:07:28.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.763][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:28.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:28.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:28.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.782][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:28.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.788][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:28.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:07:28.804][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:28.805][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:28.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:28.944][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:28.947][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:28.949][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:07:28.950][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:28.952][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:07:28.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:28.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:28.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:28.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:28.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:28.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:28.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:28.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:28.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.030][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:29.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.050][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:29.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:29.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:29.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.064][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.070][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:29.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:07:29.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.104][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:29.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:29.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:29.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.119][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:29.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:07:29.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.163][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:29.165][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:29.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:29.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.178][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.184][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:07:29.200][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:29.201][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:29.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:29.341][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:29.345][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:29.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:07:29.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:29.353][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:07:29.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.423][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:29.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.443][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:29.444][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:29.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:29.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:07:29.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.497][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:29.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:29.499][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:29.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.512][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.517][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:07:29.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.557][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:29.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:29.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:29.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.571][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.577][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:29.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.592][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:07:29.593][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:29.594][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:29.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:29.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:29.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:29.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "460e5a713fddea0c2866dcbc892dfc2b".
biodb.TRACE[2022-04-09 08:07:29.770][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:29.771][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.content".
biodb.DEBUG[2022-04-09 08:07:29.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:29.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:29.954][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:29.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:29.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:29.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:29.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:29.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:29.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:29.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:29.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.974][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:29.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:29.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:29.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.981][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.986][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:29.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.993][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:29.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:29.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:07:30.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.027][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:30.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:30.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:30.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.041][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.047][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:30.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:07:30.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.081][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:30.082][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:30.083][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:30.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.095][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:07:30.117][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:30.118][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:30.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:30.267][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:30.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0908e22233c03290fae8e61cbb27ce42".
biodb.TRACE[2022-04-09 08:07:30.269][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:30.271][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.content".
biodb.DEBUG[2022-04-09 08:07:30.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:30.941][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:30.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:30.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:30.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.960][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:30.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:30.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:30.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.974][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:30.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.980][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:30.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:30.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:07:30.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:30.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:30.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:30.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.013][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:31.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:31.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:31.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.027][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:07:31.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.071][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:31.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:31.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:31.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.085][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.091][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:31.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.105][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:07:31.106][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:31.107][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:31.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.245][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:31.249][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:31.254][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:07:31.256][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:31.258][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:07:31.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:31.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:31.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:31.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:31.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:31.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.369][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:31.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:31.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:31.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.373][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.382][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.383][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.389][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.403][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:07:31.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.422][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:31.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:31.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:31.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.436][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.448][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:07:31.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.481][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:31.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:31.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:31.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.495][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:07:31.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.501][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:07:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:07:31.516][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:31.517][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:07:31.538][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:31.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:31.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.543][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:31.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.547][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:31.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:31.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:31.553][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:31.554][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-04-09 08:07:31.555][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:31.556][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:31.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:31.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:31.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.768][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:31.772][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:31.773][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:07:31.774][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:31.776][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:07:31.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:31.782][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:31.784][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:07:31.785][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:31.786][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:07:31.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:31.816][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:31.819][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:31.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:07:31.822][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:31.824][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:07:31.826][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:31.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:31.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:31.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:31.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:31.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:31.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:31.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:31.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:31.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:31.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:31.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:31.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:31.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:31.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.888][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:31.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:31.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:31.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:31.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:31.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:31.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.940][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:31.941][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:31.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:31.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:31.944][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:31.945][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.950][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:31.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:31.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.958][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:31.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:31.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:31.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:31.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.967][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:31.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:31.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:31.973][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.976][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:31.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.984][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:31.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:31.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.989][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:31.999][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.002][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.007][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.016][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.020][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.033][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.036][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.042][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.043][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.046][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.055][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:32.056][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:32.057][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.061][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.062][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.070][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.079][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.087][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.088][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.095][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.099][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.104][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.108][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:32.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.203][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.234][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:07:32.284][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:32.285][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:32.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:32.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:32.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:32.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:32.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:32.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:32.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:32.432][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:32.435][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:32.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:07:32.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:32.440][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:07:32.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:32.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:32.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:32.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:32.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:32.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:32.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:32.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:32.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:32.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:32.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:32.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:32.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:32.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:32.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:32.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:32.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:32.488][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:32.489][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:07:32.491][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:32.492][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:07:32.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:32.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:32.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:32.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:32.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:32.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:32.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:32.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:32.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:32.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:32.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:32.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:32.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:32.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:32.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:32.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:32.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:32.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:32.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:32.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:32.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:32.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:32.565][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:32.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:32.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:32.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:32.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:32.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:32.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:32.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:32.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.679][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:32.680][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:32.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:32.682][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:32.683][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:32.684][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.688][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.689][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.697][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.710][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.713][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.714][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.723][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.727][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.741][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.746][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.747][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.751][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.755][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.759][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.760][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.768][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.772][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.776][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.781][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.782][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.785][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.786][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.789][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.793][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:32.795][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:32.796][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.800][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.808][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.822][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.825][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.830][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.831][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.834][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.837][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.838][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:32.844][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:32.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.847][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:32.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:32.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.944][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:32.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.979][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:32.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:33.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:33.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:33.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:33.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:33.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:33.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:33.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:33.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.138][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:33.139][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:33.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:33.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:33.142][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:33.143][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.148][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.156][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.181][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.183][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.186][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.189][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.190][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.191][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.194][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.198][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.207][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.220][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.223][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.224][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.233][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.237][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.246][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:33.247][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:33.248][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.252][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.261][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.262][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.267][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.270][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.271][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.292][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.294][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.297][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.306][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:33.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.385][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.390][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.394][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:33.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:33.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:33.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:33.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:33.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:33.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:33.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:33.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.591][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:33.592][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:33.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:33.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:33.595][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:33.596][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.600][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.602][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.609][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.622][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.635][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.637][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.640][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.644][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.645][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.649][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.658][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.666][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.667][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.680][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.681][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.684][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.688][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.689][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.690][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.693][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.697][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.703][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.706][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:33.707][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:33.708][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.709][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.712][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.713][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.720][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.723][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.725][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.726][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.729][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.733][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.734][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.741][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.745][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.754][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.768][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.772][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:33.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:33.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:33.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:33.914][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:33.915][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:33.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:33.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:33.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:33.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:33.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:33.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:33.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:34.059][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:34.062][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:34.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:07:34.065][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:34.066][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:07:34.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.222][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:34.225][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:34.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:07:34.228][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:34.229][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:07:34.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.275][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:34.278][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:34.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:07:34.281][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:34.283][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:07:34.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.331][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:34.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:34.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:34.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.451][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:34.452][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:34.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:34.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:34.455][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:34.456][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.461][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.469][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.482][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.546][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.555][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.556][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.559][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.560][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.563][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:34.565][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:34.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.568][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.572][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.582][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.596][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.608][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.609][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.612][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:34.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:34.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.621][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:34.622][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:34.624][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.627][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.628][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.642][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.647][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.648][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.653][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.657][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.660][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.669][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.673][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:34.679][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:34.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.706][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:34.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.765][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:34.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:34.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:34.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-04-09 08:07:34.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.947][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.039][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:35.040][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:35.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:35.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:35.043][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:35.044][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.048][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.057][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.078][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.080][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.089][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.090][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.093][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.098][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.099][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.102][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.106][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.115][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.119][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.125][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.128][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.134][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.142][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.143][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.146][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.150][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.155][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:35.156][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:35.157][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.161][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.162][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.170][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.174][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.175][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.179][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.180][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.183][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.192][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.196][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.197][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.200][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.205][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.219][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.316][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.325][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-04-09 08:07:35.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:35.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:35.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:35.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:35.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:35.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:35.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.453][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.479][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:35.480][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:35.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:35.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:35.483][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:35.484][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.489][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.497][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.510][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.511][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.518][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.519][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.523][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.524][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.527][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.528][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.535][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.539][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.543][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.548][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.549][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.560][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.561][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.564][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.573][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.574][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.577][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.586][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:35.587][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:35.588][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.592][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.595][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.600][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.603][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.609][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.622][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.624][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.632][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.637][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.645][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:35.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:35.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:35.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:35.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:35.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:35.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:35.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:35.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:35.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-04-09 08:07:35.824][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:35.825][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:35.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:35.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:35.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:35.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:35.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:35.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:35.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:35.969][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:35.973][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:35.974][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:07:35.975][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:35.977][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:07:35.980][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:35.983][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:35.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:07:35.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:35.992][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:07:35.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:35.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:35.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:35.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:36.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:36.021][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:36.022][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:07:36.024][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:36.025][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:07:36.028][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:36.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:36.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:36.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:36.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:36.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.154][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:36.155][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:36.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:36.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:36.159][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:36.160][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.161][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.164][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.173][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.192][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.193][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.197][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.206][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.210][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.219][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.220][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.223][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.228][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.237][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.255][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.264][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.265][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.268][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.272][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.277][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.278][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.281][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:36.282][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:36.283][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.288][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.297][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.309][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.310][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.311][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.318][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.323][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.328][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.337][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:36.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.514][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:07:36.515][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:36.516][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:36.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:36.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:36.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:36.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:36.663][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:36.666][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:36.668][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:07:36.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:36.671][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:07:36.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:36.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:36.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:36.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:36.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:36.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:36.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:36.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:36.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:36.721][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:36.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:07:36.724][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:36.725][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:07:36.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:36.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:36.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:36.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:36.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:36.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:36.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:36.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:36.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:36.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:36.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:36.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:36.799][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:36.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:36.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:36.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:36.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:36.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:36.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:36.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.060][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:37.061][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:37.062][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:37.063][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:37.065][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:37.066][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.070][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.071][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.079][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.083][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.084][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.093][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.096][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.104][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.109][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.110][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.117][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.118][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.122][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.126][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.127][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.135][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.142][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.148][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.149][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.152][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.157][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.161][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.162][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.165][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.169][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.174][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.175][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.178][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:37.179][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:37.180][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.184][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.193][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.203][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.206][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.207][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.210][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.212][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.220][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.222][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.225][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.232][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.235][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:37.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.260][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.409][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:37.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:37.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:37.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:37.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:37.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:37.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:37.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:37.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.475][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.537][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:37.538][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:37.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:37.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:37.542][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:37.543][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.547][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.548][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.556][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.574][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.582][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.584][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.587][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.595][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.596][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.597][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.600][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.605][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.606][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.614][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.644][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.648][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.652][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.654][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.657][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.658][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:37.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.661][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:37.662][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:37.663][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.668][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.677][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.681][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.689][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.690][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.691][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.694][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.703][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.707][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.712][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.713][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.716][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:37.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.797][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.888][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:37.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:37.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:37.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:37.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:37.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:37.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:37.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:37.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:37.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:37.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:37.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:37.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.954][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:37.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:37.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:37.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:37.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.015][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:38.016][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:38.017][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:38.018][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:38.019][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:38.021][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.025][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.026][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.034][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.038][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.039][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.051][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.052][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.060][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.061][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.064][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.068][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.073][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.074][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.077][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.082][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.090][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.095][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.096][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.099][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.100][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.107][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.116][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.117][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.119][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.120][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.129][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.130][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.134][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:38.135][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:38.136][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.140][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.149][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.162][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.167][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.171][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.172][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.175][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.179][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.183][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.210][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:38.342][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:38.343][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:38.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:38.484][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:38.487][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:38.489][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:07:38.490][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:38.492][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:07:38.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.645][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:38.648][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:38.650][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:07:38.651][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:38.653][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:07:38.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.698][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:38.701][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:38.702][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:07:38.704][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:38.705][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:07:38.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.754][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:38.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:38.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:38.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:38.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:38.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:38.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:38.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:38.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.881][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:38.882][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:38.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:38.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:38.885][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:38.887][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.891][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.892][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.899][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.907][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.912][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.916][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.921][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.925][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.926][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.928][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.929][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.933][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.934][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.938][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.939][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.945][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:38.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:38.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.949][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:38.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:38.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:38.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.958][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:38.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:38.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:38.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:38.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:38.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:38.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.975][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.983][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.984][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:38.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.986][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.987][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:38.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:38.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.996][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.997][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:38.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.000][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:39.001][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:39.002][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.006][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.007][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.015][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.023][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.027][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.036][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.040][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.041][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.044][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.045][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.053][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-04-09 08:07:39.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:39.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:39.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:39.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:39.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:39.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:39.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:39.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.337][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:39.338][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:39.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:39.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:39.341][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:39.342][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.346][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.355][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.356][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.363][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.364][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.367][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.368][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.370][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.371][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.380][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.381][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.384][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.392][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.393][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.396][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.400][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.401][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.409][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.413][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.416][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.434][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.438][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.443][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.446][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.448][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.451][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:39.452][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:39.453][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.457][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.465][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.474][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.487][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.490][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.491][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.494][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.503][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.525][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-04-09 08:07:39.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:39.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:39.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:39.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:39.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:39.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:39.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:39.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.774][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:39.775][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:39.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:39.777][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:39.778][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:39.779][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.783][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.792][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.804][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.805][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.809][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.813][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.817][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.818][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.821][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.830][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.831][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.834][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.842][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.843][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.850][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.851][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.867][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.875][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.876][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.879][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.884][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.885][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.888][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.889][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:39.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.892][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:39.893][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:39.894][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.898][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.899][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.906][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.907][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.910][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.913][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.915][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:39.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.918][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.919][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:39.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:39.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:39.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.930][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:39.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.935][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:39.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:39.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:39.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:39.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.943][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:39.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:39.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:39.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:39.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:39.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:39.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-04-09 08:07:40.109][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:40.110][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:07:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:40.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:40.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:40.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:40.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:40.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:40.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:40.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:40.301][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:40.304][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:40.305][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:07:40.307][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:40.308][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:07:40.311][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:40.314][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:40.315][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:07:40.317][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:40.318][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:07:40.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:40.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:40.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:40.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:40.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:40.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:40.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:40.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:40.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:40.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:40.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:40.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:40.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:40.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:40.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:40.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:40.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:40.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:40.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:40.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:40.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:40.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:40.387][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:40.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:40.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:40.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:40.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:40.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:40.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:40.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:40.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.448][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.452][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.500][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:40.501][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:40.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:40.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:40.504][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:40.505][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.509][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.510][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.517][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.530][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.531][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.543][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.547][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.551][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.556][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.559][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.563][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.571][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.584][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.587][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.588][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.595][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.596][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.599][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.603][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.607][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:40.609][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:40.610][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.614][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.622][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.638][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.646][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.647][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.650][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.658][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.750][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:07:40.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:40.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:40.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:40.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:40.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:40.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:40.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:40.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.847][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.940][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:40.941][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:40.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:40.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:40.944][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:40.945][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.949][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:40.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:40.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.957][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:40.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:40.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:40.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:40.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:40.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.969][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:40.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:40.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:40.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.981][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:40.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.985][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:40.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:40.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.989][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:40.991][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:40.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.994][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:40.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:40.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:40.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:40.998][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:40.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.006][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.010][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.011][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.031][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.035][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.040][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.041][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.044][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:41.045][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:41.046][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.050][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.051][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.058][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.076][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.084][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.092][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.098][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.101][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.115][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:07:41.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:41.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:41.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:41.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:41.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:41.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:41.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.349][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.374][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:41.375][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:41.376][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:41.377][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:41.378][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:41.379][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.384][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.385][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.392][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.405][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.406][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.416][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.422][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.430][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.434][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.442][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.443][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.464][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.473][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.474][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.477][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.481][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.483][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.486][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:41.487][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:41.488][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.492][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.493][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.500][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.513][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.522][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.523][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.526][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.534][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.644][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.683][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:07:41.684][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:41.685][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:41.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:41.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:41.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:41.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:41.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:41.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:41.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:41.821][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:41.824][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:41.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:07:41.827][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:41.828][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:07:41.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:41.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:41.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:41.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:41.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:41.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:41.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:41.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:41.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:41.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:41.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:41.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:41.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:41.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:41.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:41.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:41.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:41.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:41.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:41.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:41.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:41.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:41.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:41.891][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:41.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:41.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:41.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:41.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:41.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:41.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:41.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:41.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:41.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:41.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:41.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:41.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:41.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:41.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:41.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.004][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:42.005][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:42.006][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:42.007][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:42.008][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:42.009][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.014][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.015][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.017][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.022][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.026][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.030][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.035][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.036][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.039][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.047][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.052][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.056][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.057][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.060][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.065][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.073][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.090][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.098][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.103][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.107][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.108][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.111][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:42.113][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:42.114][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.118][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.119][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.127][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.131][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.132][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.144][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.153][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.158][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.167][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.171][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:42.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.261][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:42.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:42.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:42.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:42.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:42.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:42.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:42.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.367][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.460][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:42.461][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:42.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:42.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:42.464][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:42.466][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.470][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.479][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.486][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.492][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.496][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.505][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.510][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.514][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.515][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.518][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.523][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.524][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.532][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.537][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.549][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.554][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.555][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.562][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.563][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.566][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.575][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:42.576][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:42.577][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.582][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.590][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.599][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.600][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.612][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.616][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.617][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.624][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.639][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:42.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:42.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:42.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:42.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:42.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:42.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:42.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.900][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:42.901][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:42.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:42.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:42.904][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:42.905][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.910][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.911][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.923][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.934][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.938][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.941][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.950][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:42.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.954][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:42.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:42.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.959][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:42.960][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:42.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.963][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:42.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:42.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.968][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:42.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:42.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:42.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.976][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:42.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:42.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:42.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:42.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.986][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:42.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.994][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:42.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:42.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.003][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.007][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.016][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:43.017][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:43.018][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.022][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.031][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.044][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.053][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.058][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.066][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:07:43.229][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:43.230][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:43.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:43.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:43.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:43.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:43.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:43.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:43.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:43.373][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:43.376][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:43.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:07:43.379][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:43.380][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:07:43.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:43.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:43.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:43.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:43.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:43.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:43.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:43.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:43.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:43.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:43.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:43.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:43.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:43.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:43.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:43.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:43.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:43.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:43.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:43.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:43.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:43.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:43.446][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:43.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:43.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:43.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:43.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:43.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:43.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:43.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:43.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.514][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.567][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:43.568][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:43.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:43.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:43.571][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:43.572][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.577][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.578][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.585][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.588][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.602][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.611][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.612][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.616][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.617][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.624][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.627][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.629][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.637][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.647][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.655][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.664][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.668][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.672][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.681][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:43.682][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:43.683][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.688][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.689][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.696][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.709][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.713][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.714][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.722][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.727][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.734][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.735][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:43.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:43.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-04-09 08:07:43.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:43.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:43.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:43.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:43.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:43.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:43.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:43.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:43.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.927][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:43.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:43.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:43.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:43.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:43.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:43.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:43.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:43.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:43.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.024][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:44.025][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:44.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:44.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:44.028][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:44.030][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.038][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.039][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.046][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.072][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.077][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.085][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.086][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.090][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.098][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.111][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.112][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.115][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.119][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.124][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.128][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.129][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.137][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:44.138][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:44.139][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.142][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.143][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.152][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.156][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.165][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.174][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.178][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.184][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.187][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-04-09 08:07:44.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:44.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:44.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:44.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:44.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:44.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:44.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.464][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:44.465][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:44.466][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:44.467][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:44.468][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:44.469][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.473][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.482][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.494][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.496][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.499][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.500][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.504][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.507][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.508][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.512][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.517][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.520][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.525][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.526][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.533][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.538][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.539][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.542][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.543][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:44.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.551][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.559][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.561][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.564][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.568][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.569][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.573][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:44.574][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:44.575][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.579][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.592][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.593][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.595][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.596][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.601][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.602][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.605][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.614][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.618][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.624][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.627][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:44.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:44.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:44.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:44.792][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:44.793][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:44.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:44.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:44.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:44.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:44.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:44.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:44.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:44.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:44.942][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:44.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:07:44.945][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:44.946][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:07:44.949][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:44.953][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:44.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:07:44.955][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:44.957][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:07:44.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:44.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:44.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:44.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:44.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:44.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:44.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:44.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:44.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:44.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:44.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:44.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:44.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:44.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:44.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:44.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:45.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:45.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:45.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:45.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:45.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:45.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:45.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:45.028][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:45.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:45.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:45.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:45.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:45.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:45.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:45.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:45.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.155][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:45.156][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:45.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:45.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:45.159][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:45.161][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.165][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.173][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.177][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.184][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.190][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.198][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.202][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.211][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.212][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.215][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.219][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.228][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.241][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.242][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.245][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.254][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.258][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.266][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.268][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.271][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:45.272][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:45.273][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.277][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.285][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.298][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.299][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.302][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.311][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.315][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.318][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.319][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.321][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.324][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:45.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.342][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.451][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:07:45.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:45.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:45.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:45.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:45.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:45.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:45.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.631][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:45.632][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:45.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:45.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:45.635][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:45.636][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.641][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.650][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.658][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.666][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.667][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.676][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.681][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.682][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.685][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.686][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.688][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.689][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.691][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.694][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.698][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.707][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.721][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.723][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.726][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.727][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.729][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.730][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.731][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.739][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.740][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.743][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.748][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.752][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.753][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:45.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.757][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:45.758][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:45.759][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.763][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.772][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.790][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.799][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.803][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.812][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:45.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:45.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:45.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.894][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:45.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:45.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.985][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:07:45.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:45.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:45.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:45.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:45.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:45.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:45.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:45.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:45.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:45.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.114][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:46.115][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:46.116][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:46.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:46.118][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:46.119][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.123][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.124][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.132][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.145][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.146][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.149][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.158][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.162][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.171][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.172][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.175][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.180][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.181][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.188][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.206][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.214][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.219][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.220][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.224][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.227][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.229][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.232][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:46.233][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:46.234][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.239][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.247][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.273][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.278][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.286][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:07:46.567][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:46.568][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:46.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:46.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:46.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:46.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:46.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:46.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:46.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:46.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:46.713][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:46.715][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:07:46.716][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:46.718][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:07:46.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:46.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:46.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:46.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:46.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:46.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:46.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:46.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:46.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:46.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:46.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:46.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:46.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:46.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:46.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:46.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:46.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:46.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:46.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:46.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:46.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:46.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:46.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:46.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:46.789][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:46.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:46.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:46.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:46.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:46.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:46.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:46.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:46.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.911][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:46.912][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:46.913][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:46.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:46.915][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:46.916][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.921][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.928][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.929][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:46.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.942][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.943][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:46.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.951][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:46.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:46.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.960][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.961][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:46.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.964][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:46.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:46.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:46.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:46.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.973][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.974][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:46.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.977][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:46.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:46.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.981][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:46.982][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:46.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:46.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.990][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:46.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:46.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:46.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:46.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:46.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:46.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.003][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.004][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.007][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.016][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.020][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.025][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.028][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.030][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.033][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:47.034][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:47.035][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.039][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.040][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.048][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.061][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.062][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.065][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.069][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.074][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.078][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.082][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.083][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.086][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:47.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.175][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:47.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:47.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:47.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:47.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:47.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:47.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:47.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.351][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.387][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:47.388][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:47.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:47.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:47.391][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:47.392][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.396][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.397][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.405][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.406][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.418][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.419][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.422][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.423][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.431][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.432][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.435][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.444][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.445][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.448][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.449][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.452][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.461][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.486][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.487][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.492][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.505][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.506][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.509][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:47.510][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:47.511][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.515][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.517][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.524][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.537][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.538][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.541][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.542][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.546][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.547][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.550][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.554][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.555][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.559][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:47.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:47.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:47.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:47.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:47.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:47.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:47.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:47.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.840][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:47.841][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:47.842][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:47.843][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:47.845][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:47.846][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.850][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.851][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.859][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.880][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.881][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.884][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.889][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.890][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.892][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.893][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.895][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.896][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.899][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.902][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.903][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.906][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.910][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.919][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.932][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:47.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.936][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.942][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.945][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:47.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.949][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:47.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:47.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:47.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:47.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.958][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.959][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:47.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.962][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:47.963][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:47.964][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:47.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:47.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.969][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:47.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:47.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:47.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.977][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:47.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:47.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:47.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:47.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.990][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:47.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:47.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:47.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:47.999][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.003][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.004][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.007][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.009][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.012][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.170][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:07:48.171][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:48.172][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:48.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:48.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:48.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:48.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:48.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:48.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:48.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:48.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:07:48.318][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:48.320][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:07:48.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:48.323][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:07:48.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:48.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:48.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:48.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:48.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:48.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:48.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:48.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:48.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:48.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:48.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:48.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:48.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:48.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:48.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:48.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:48.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:48.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:48.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:48.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:48.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:48.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:48.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:48.389][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:48.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:48.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:48.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:48.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:48.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:48.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:48.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.461][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.487][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.517][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:48.518][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:48.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:48.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:48.521][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:48.522][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.527][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.535][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.543][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.548][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.549][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.552][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.556][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.561][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.562][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.565][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.574][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.575][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.578][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.583][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.584][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.596][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.603][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.609][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.610][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.613][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.621][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.626][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.634][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.635][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.639][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:48.640][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:48.641][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.645][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.654][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.666][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.667][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.668][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.671][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.674][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.680][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.684][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.693][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:48.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-04-09 08:07:48.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:48.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:48.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:48.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:48.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:48.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:48.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:48.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.890][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:48.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:48.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:48.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:48.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:48.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:48.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:48.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:48.997][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:48.998][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:48.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:49.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:49.001][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:49.002][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.006][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.007][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.015][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.023][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.036][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.041][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.045][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.054][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.055][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.057][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.058][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.063][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.071][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.084][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.085][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.097][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.098][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.101][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.109][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.110][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.113][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:49.115][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:49.116][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.119][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.120][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.121][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.128][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.133][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.141][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.155][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.156][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.160][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.168][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-04-09 08:07:49.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:49.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:49.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:49.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:49.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:49.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:49.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.393][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.451][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:49.452][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:49.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:49.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:49.455][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:07:49.456][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.460][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.469][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.481][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.482][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.485][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.494][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.498][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.507][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.508][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.511][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.520][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.529][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.537][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.541][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:49.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.546][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.554][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.555][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.559][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.560][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.563][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.564][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.567][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.569][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:07:49.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.572][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:49.573][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:07:49.574][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.578][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.579][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.587][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.600][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.603][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.608][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.609][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.613][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.621][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:07:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:07:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:07:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:49.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:49.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:07:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:07:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:07:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:49.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:49.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:07:49.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:49.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:49.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:07:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:07:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:07:49.780][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:49.781][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:07:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:49.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:49.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:49.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:49.800][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-09 08:07:49.801][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-09 08:07:49.802][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-09 08:07:49.803][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-09 08:07:49.804][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:49.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:49.806][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:49.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:49.808][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:49.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1333 ]
> 
> proc.time()
   user  system elapsed 
128.717   3.199 275.258

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)