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BUILD BIN report for qckitfastq on tokay2

This page was generated on 2019-10-16 12:43:40 -0400 (Wed, 16 Oct 2019).

Package 1282/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qckitfastq 1.0.1
August Guang
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/qckitfastq
Branch: RELEASE_3_9
Last Commit: 077b5a5
Last Changed Date: 2019-09-17 16:06:14 -0400 (Tue, 17 Sep 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: qckitfastq
Version: 1.0.1
Command: rm -rf qckitfastq.buildbin-libdir && mkdir qckitfastq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qckitfastq.buildbin-libdir qckitfastq_1.0.1.tar.gz
StartedAt: 2019-10-16 09:58:32 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 09:59:35 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 63.8 seconds
RetCode: 0
Status:  OK  
PackageFile: qckitfastq_1.0.1.zip
PackageFileSize: 1.553 MiB

Command output

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###
### Running command:
###
###   rm -rf qckitfastq.buildbin-libdir && mkdir qckitfastq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qckitfastq.buildbin-libdir qckitfastq_1.0.1.tar.gz
###
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install for i386

* installing *source* package 'qckitfastq' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c calc_adapter_content.cpp -o calc_adapter_content.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c gzstream.cpp -o gzstream.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c read_fastq.cpp -o read_fastq.o
read_fastq.cpp: In function 'Rcpp::List qual_score_per_read(std::string)':
read_fastq.cpp:181:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if (pos_counter <= qual_score_matrix.size()) {
                                 ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o qckitfastq.dll tmp.def RcppExports.o calc_adapter_content.o gzstream.o read_fastq.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/qckitfastq.buildbin-libdir/00LOCK-qckitfastq/00new/qckitfastq/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'qckitfastq'
    finding HTML links ... done
    GC_content                              html  
    adapter_content                         html  
    calc_adapter_content                    html  
    calc_format_score                       html  
    calc_over_rep_seq                       html  
    dimensions                              html  
    find_format                             html  
    gc_per_read                             html  
    kmer_count                              html  
    overrep_kmer                            html  
    overrep_reads                           html  
    per_base_quality                        html  
    per_read_quality                        html  
    plot_GC_content                         html  
    plot_adapter_content                    html  
    plot_outliers                           html  
    plot_overrep_kmer                       html  
    plot_overrep_reads                      html  
    plot_per_base_quality                   html  
    plot_per_read_quality                   html  
    plot_read_content                       html  
    plot_read_length                        html  
    qual_score_per_read                     html  
    read_base_content                       html  
    read_content                            html  
    read_length                             html  
    run_all                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'qckitfastq' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c calc_adapter_content.cpp -o calc_adapter_content.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c gzstream.cpp -o gzstream.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c read_fastq.cpp -o read_fastq.o
read_fastq.cpp: In function 'Rcpp::List qual_score_per_read(std::string)':
read_fastq.cpp:181:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if (pos_counter <= qual_score_matrix.size()) {
                                 ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o qckitfastq.dll tmp.def RcppExports.o calc_adapter_content.o gzstream.o read_fastq.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/qckitfastq.buildbin-libdir/qckitfastq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qckitfastq' as qckitfastq_1.0.1.zip
* DONE (qckitfastq)