Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:43:40 -0400 (Wed, 16 Oct 2019).
Package 1282/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
qckitfastq 1.0.1 August Guang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: qckitfastq |
Version: 1.0.1 |
Command: rm -rf qckitfastq.buildbin-libdir && mkdir qckitfastq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qckitfastq.buildbin-libdir qckitfastq_1.0.1.tar.gz |
StartedAt: 2019-10-16 09:58:32 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 09:59:35 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 63.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: qckitfastq_1.0.1.zip |
PackageFileSize: 1.553 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf qckitfastq.buildbin-libdir && mkdir qckitfastq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qckitfastq.buildbin-libdir qckitfastq_1.0.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'qckitfastq' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c calc_adapter_content.cpp -o calc_adapter_content.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c gzstream.cpp -o gzstream.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c read_fastq.cpp -o read_fastq.o read_fastq.cpp: In function 'Rcpp::List qual_score_per_read(std::string)': read_fastq.cpp:181:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos_counter <= qual_score_matrix.size()) { ^ C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o qckitfastq.dll tmp.def RcppExports.o calc_adapter_content.o gzstream.o read_fastq.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/qckitfastq.buildbin-libdir/00LOCK-qckitfastq/00new/qckitfastq/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'qckitfastq' finding HTML links ... done GC_content html adapter_content html calc_adapter_content html calc_format_score html calc_over_rep_seq html dimensions html find_format html gc_per_read html kmer_count html overrep_kmer html overrep_reads html per_base_quality html per_read_quality html plot_GC_content html plot_adapter_content html plot_outliers html plot_overrep_kmer html plot_overrep_reads html plot_per_base_quality html plot_per_read_quality html plot_read_content html plot_read_length html qual_score_per_read html read_base_content html read_content html read_length html run_all html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'qckitfastq' ... ** libs C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c calc_adapter_content.cpp -o calc_adapter_content.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c gzstream.cpp -o gzstream.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c read_fastq.cpp -o read_fastq.o read_fastq.cpp: In function 'Rcpp::List qual_score_per_read(std::string)': read_fastq.cpp:181:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos_counter <= qual_score_matrix.size()) { ^ C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o qckitfastq.dll tmp.def RcppExports.o calc_adapter_content.o gzstream.o read_fastq.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/qckitfastq.buildbin-libdir/qckitfastq/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'qckitfastq' as qckitfastq_1.0.1.zip * DONE (qckitfastq)