August Guang
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/qckitfastq |
| Branch: RELEASE_3_9 |
| Last Commit: 077b5a5 |
| Last Changed Date: 2019-09-17 16:06:14 -0400 (Tue, 17 Sep 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 13:04:29 -0400 (Wed, 16 Oct 2019).
| Package 1282/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| qckitfastq 1.0.1 August Guang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: qckitfastq |
| Version: 1.0.1 |
| Command: rm -rf qckitfastq.buildbin-libdir && mkdir qckitfastq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qckitfastq_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qckitfastq.buildbin-libdir |
| StartedAt: 2019-10-16 09:11:41 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 09:12:24 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 42.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: qckitfastq_1.0.1.tgz |
| PackageFileSize: 1.059 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf qckitfastq.buildbin-libdir && mkdir qckitfastq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qckitfastq_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qckitfastq.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qckitfastq.buildbin-libdir qckitfastq_1.0.1.tar.gz' >>>>>>> * installing *source* package ‘qckitfastq’ ... ** using staged installation ** libs clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c calc_adapter_content.cpp -o calc_adapter_content.o clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c gzstream.cpp -o gzstream.o clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RSeqAn/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c read_fastq.cpp -o read_fastq.o clang++ -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qckitfastq.so RcppExports.o calc_adapter_content.o gzstream.o read_fastq.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/qckitfastq.buildbin-libdir/00LOCK-qckitfastq/00new/qckitfastq/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qckitfastq) >>>>>>> >>>>>>> FIXING LINKS FOR qckitfastq.buildbin-libdir/qckitfastq/libs//qckitfastq.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "qckitfastq.buildbin-libdir/qckitfastq/libs//qckitfastq.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "qckitfastq.buildbin-libdir/qckitfastq/libs//qckitfastq.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "qckitfastq.buildbin-libdir/qckitfastq/libs//qckitfastq.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "qckitfastq.buildbin-libdir/qckitfastq/libs//qckitfastq.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "qckitfastq.buildbin-libdir/qckitfastq/libs//qckitfastq.so"