Package: makecdfenv

Version: 1.60.0

Command: rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh makecdfenv_1.60.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R makecdfenv.buildbin-libdir

StartedAt: 2019-10-16 08:52:46 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 08:53:00 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 14.6 seconds

RetCode: 0

Status:  OK

PackageFile: makecdfenv_1.60.0.tgz

PackageFileSize: 3.237 MiB

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### Running command:
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###   rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh makecdfenv_1.60.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R makecdfenv.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=makecdfenv.buildbin-libdir makecdfenv_1.60.0.tar.gz'
>>>>>>> 

* installing *source* package ‘makecdfenv’ ...
** using staged installation
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DHAVE_ZLIB=1   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c read_cdffile.c -o read_cdffile.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/makecdfenv.buildbin-libdir/00LOCK-makecdfenv/00new/makecdfenv/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (makecdfenv)


>>>>>>> 
>>>>>>> FIXING LINKS FOR makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"