Package: makecdfenv

Version: 1.60.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/makecdfenv_1.60.0.tar.gz && rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=makecdfenv.buildbin-libdir makecdfenv_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL makecdfenv_1.60.0.zip && rm makecdfenv_1.60.0.tar.gz makecdfenv_1.60.0.zip

StartedAt: 2019-10-15 19:28:38 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 19:29:34 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 56.4 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/makecdfenv_1.60.0.tar.gz && rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=makecdfenv.buildbin-libdir makecdfenv_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL makecdfenv_1.60.0.zip && rm makecdfenv_1.60.0.tar.gz makecdfenv_1.60.0.zip
###
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install for i386

* installing *source* package 'makecdfenv' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'readQC':
read_cdffile.c:576:7: warning: variable 'typeQC' set but not used [-Wunused-but-set-variable]
   int typeQC;
       ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o makecdfenv.dll tmp.def read_cdffile.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/makecdfenv.buildbin-libdir/00LOCK-makecdfenv/00new/makecdfenv/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'makecdfenv'
    finding HTML links ... done
    Cdf-class                               html  
    getInfoInAffyFile                       html  
    make.cdf.env                            html  
    make.cdf.package                        html  
    pmormm                                  html  
    read.cdffile                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'makecdfenv' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'readQC':
read_cdffile.c:576:7: warning: variable 'typeQC' set but not used [-Wunused-but-set-variable]
   int typeQC;
       ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o makecdfenv.dll tmp.def read_cdffile.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'makecdfenv' as makecdfenv_1.60.0.zip
* DONE (makecdfenv)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'makecdfenv' successfully unpacked and MD5 sums checked