Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:21:49 -0400 (Wed, 16 Oct 2019).
Package 696/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
goProfiles 1.46.0 Alex Sanchez
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: goProfiles |
Version: 1.46.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:goProfiles.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings goProfiles_1.46.0.tar.gz |
StartedAt: 2019-10-16 04:08:51 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 04:13:27 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 275.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: goProfiles.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:goProfiles.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings goProfiles_1.46.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/goProfiles.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'goProfiles/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'goProfiles' version '1.46.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'goProfiles' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed compareGeneLists 17.60 0.30 17.89 equivalentGOProfiles 13.57 0.25 14.57 fisherGOProfiles 6.95 0.05 7.00 mergeProfilesLists 6.13 0.10 6.21 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed compareGeneLists 23.65 0.16 23.80 equivalentGOProfiles 19.17 0.21 19.38 fisherGOProfiles 7.14 0.06 7.27 plotProfiles 6.08 0.07 6.15 printProfiles 6.00 0.03 6.10 mergeProfilesLists 5.59 0.06 5.65 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
goProfiles.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/goProfiles_1.46.0.tar.gz && rm -rf goProfiles.buildbin-libdir && mkdir goProfiles.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=goProfiles.buildbin-libdir goProfiles_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL goProfiles_1.46.0.zip && rm goProfiles_1.46.0.tar.gz goProfiles_1.46.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 284k 100 284k 0 0 1111k 0 --:--:-- --:--:-- --:--:-- 1144k install for i386 * installing *source* package 'goProfiles' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'goProfiles' finding HTML links ... done CD4ids html GOTermsList html basicProfile html clustKidneyMF2 html compSummary html compareGOProfiles html compareGeneLists html compareProfilesLists html contractedProfile html conversionFunctions html drosophila html equivClust html equivClust2pdf html equivSummary html equivalentGOProfiles html expandedLevel html expandedProfile html fisherGOProfiles html fitGOProfile html goProfiles-package html hugoIds html iterEquivClust html kidneyGeneLists html mergeProfilesLists html ngenes html omimIds html plotProfiles html printProfiles html prostateIds html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'goProfiles' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'goProfiles' as goProfiles_1.46.0.zip * DONE (goProfiles) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'goProfiles' successfully unpacked and MD5 sums checked
goProfiles.Rcheck/examples_i386/goProfiles-Ex.timings
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goProfiles.Rcheck/examples_x64/goProfiles-Ex.timings
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