Alex Sanchez
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/goProfiles |
| Branch: RELEASE_3_9 |
| Last Commit: 52909bb |
| Last Changed Date: 2019-05-02 11:53:10 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 11:56:54 -0400 (Wed, 16 Oct 2019).
| Package 696/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| goProfiles 1.46.0 Alex Sanchez
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: goProfiles |
| Version: 1.46.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:goProfiles.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings goProfiles_1.46.0.tar.gz |
| StartedAt: 2019-10-16 02:05:36 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 02:08:49 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 192.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: goProfiles.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:goProfiles.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings goProfiles_1.46.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/goProfiles.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘goProfiles/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘goProfiles’ version ‘1.46.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘goProfiles’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
compareGeneLists 25.462 0.068 26.501
equivalentGOProfiles 18.156 0.075 18.597
fisherGOProfiles 7.651 0.016 7.760
mergeProfilesLists 6.568 0.000 6.765
printProfiles 6.456 0.012 6.583
plotProfiles 6.280 0.012 6.315
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
goProfiles.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL goProfiles ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘goProfiles’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goProfiles)
goProfiles.Rcheck/goProfiles-Ex.timings
| name | user | system | elapsed | |
| CD4ids | 0.003 | 0.000 | 0.003 | |
| GOTermsList | 0.001 | 0.000 | 0.000 | |
| basicProfile | 4.476 | 0.077 | 4.617 | |
| compSummary | 0 | 0 | 0 | |
| compareGOProfiles | 4.774 | 0.036 | 4.866 | |
| compareGeneLists | 25.462 | 0.068 | 26.501 | |
| compareProfilesLists | 0 | 0 | 0 | |
| contractedProfile | 2.276 | 0.016 | 2.320 | |
| conversionFunctions | 0.038 | 0.000 | 0.038 | |
| drosophila | 0.003 | 0.000 | 0.003 | |
| equivClust | 0.000 | 0.000 | 0.001 | |
| equivClust2pdf | 0.028 | 0.000 | 0.028 | |
| equivSummary | 0 | 0 | 0 | |
| equivalentGOProfiles | 18.156 | 0.075 | 18.597 | |
| expandedLevel | 1.062 | 0.016 | 1.085 | |
| expandedProfile | 1.217 | 0.000 | 1.219 | |
| fisherGOProfiles | 7.651 | 0.016 | 7.760 | |
| fitGOProfile | 0.001 | 0.000 | 0.000 | |
| hugoIds | 0.025 | 0.000 | 0.025 | |
| iterEquivClust | 0.001 | 0.000 | 0.001 | |
| mergeProfilesLists | 6.568 | 0.000 | 6.765 | |
| ngenes | 2.563 | 0.000 | 2.609 | |
| omimIds | 0.008 | 0.000 | 0.008 | |
| plotProfiles | 6.280 | 0.012 | 6.315 | |
| printProfiles | 6.456 | 0.012 | 6.583 | |
| prostateIds | 0.007 | 0.000 | 0.006 | |