Hai Fang
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/Pi |
| Branch: RELEASE_3_9 |
| Last Commit: 0be14b5 |
| Last Changed Date: 2019-05-02 11:54:03 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:36:49 -0400 (Wed, 16 Oct 2019).
| Package 1210/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Pi 1.12.0 Hai Fang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Pi |
| Version: 1.12.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Pi.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings Pi_1.12.0.tar.gz |
| StartedAt: 2019-10-16 05:59:04 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 06:07:23 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 499.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Pi.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Pi.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings Pi_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/Pi.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Pi/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Pi' version '1.12.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Pi' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
Pi.Rcheck/00install.out
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### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Pi_1.12.0.tar.gz && rm -rf Pi.buildbin-libdir && mkdir Pi.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pi.buildbin-libdir Pi_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Pi_1.12.0.zip && rm Pi_1.12.0.tar.gz Pi_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1551k 100 1551k 0 0 5348k 0 --:--:-- --:--:-- --:--:-- 5481k
install for i386
* installing *source* package 'Pi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Pi'
finding HTML links ... done
cTarget html
dTarget html
eGSEA html
eTarget html
pNode html
pPerf html
sGS html
sTarget html
xContour html
xCorrelation html
xGSEAbarplot html
xGSEAconciser html
xGSEAdotplot html
xGSsimulator html
finding level-2 HTML links ... done
xMLcaret html
xMLcompare html
xMLdensity html
xMLdotplot html
xMLfeatureplot html
xMLglmnet html
xMLparameters html
xMLrandomforest html
xMLrename html
xMLzoom html
xPier html
xPierABF html
xPierABFheatmap html
xPierAnno html
xPierCor html
xPierCross html
xPierEvidence html
xPierGRs html
xPierGSEA html
xPierGenes html
xPierKEGG html
xPierManhattan html
xPierMatrix html
xPierPathways html
xPierROCR html
xPierSNPs html
xPierSNPsAdv html
xPierSNPsAdvABF html
xPierSNPsConsensus html
xPierSubnet html
xPierTrack html
xPierTrackAdv html
xPredictCompare html
xPredictROCR html
xRWR html
xVisEvidence html
xVisEvidenceAdv html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Pi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Pi' as Pi_1.12.0.zip
* DONE (Pi)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Pi' successfully unpacked and MD5 sums checked
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Pi.Rcheck/examples_i386/Pi-Ex.timings
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Pi.Rcheck/examples_x64/Pi-Ex.timings
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