Package: Pi

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pi.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pi_1.12.0.tar.gz

StartedAt: 2019-10-16 05:33:03 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 05:41:35 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 512.2 seconds

RetCode: 0

Status:  OK

CheckDir: Pi.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pi.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pi_1.12.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/Pi.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Pi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Pi’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Pi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Pi
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘Pi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Pi)

name	user	system	elapsed
cTarget	0.001	0.000	0.001
dTarget	0.000	0.001	0.000
eGSEA	0.000	0.000	0.001
eTarget	0.001	0.000	0.001
pNode	0.001	0.000	0.000
pPerf	0.001	0.001	0.001
sGS	0.001	0.001	0.001
sTarget	0.001	0.001	0.001
xContour	0.043	0.002	0.046
xCorrelation	0.000	0.001	0.001
xGSEAbarplot	0.000	0.000	0.001
xGSEAconciser	0.001	0.000	0.000
xGSEAdotplot	0.000	0.001	0.001
xGSsimulator	0.000	0.000	0.001
xMLcaret	0.001	0.000	0.000
xMLcompare	0.000	0.000	0.001
xMLdensity	0	0	0
xMLdotplot	0.001	0.001	0.001
xMLfeatureplot	0.001	0.000	0.000
xMLglmnet	0.000	0.000	0.001
xMLparameters	0	0	0
xMLrandomforest	0.001	0.001	0.001
xMLrename	0.001	0.001	0.001
xMLzoom	0.001	0.001	0.001
xPier	0.001	0.001	0.001
xPierABF	0.001	0.001	0.001
xPierABFheatmap	0.001	0.000	0.000
xPierAnno	0.001	0.000	0.002
xPierCor	0.001	0.000	0.002
xPierCross	0.000	0.000	0.001
xPierEvidence	0.001	0.000	0.000
xPierGRs	0.001	0.001	0.001
xPierGSEA	0.000	0.001	0.001
xPierGenes	0.000	0.001	0.001
xPierKEGG	0.000	0.001	0.001
xPierManhattan	0.001	0.001	0.001
xPierMatrix	0.001	0.000	0.001
xPierPathways	0.001	0.001	0.001
xPierROCR	0.001	0.001	0.001
xPierSNPs	0.001	0.001	0.001
xPierSNPsAdv	0.000	0.000	0.001
xPierSNPsAdvABF	0.000	0.000	0.001
xPierSNPsConsensus	0.000	0.000	0.001
xPierSubnet	0.001	0.001	0.002
xPierTrack	0.001	0.001	0.002
xPierTrackAdv	0.001	0.000	0.001
xPredictCompare	0.000	0.000	0.001
xPredictROCR	0.000	0.000	0.001
xRWR	0.002	0.001	0.004
xVisEvidence	0.000	0.001	0.001
xVisEvidenceAdv	0.000	0.001	0.000