Multiple platform build/check report for BioC 3.9 - BUILD BIN report for cydar on tokay2

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### Running command:
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###   rm -rf cydar.buildbin-libdir && mkdir cydar.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cydar.buildbin-libdir cydar_1.7.3.tar.gz
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install for i386

* installing *source* package 'cydar' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c compute_density.cpp -o compute_density.o
compute_density.cpp: In function 'SEXPREC* compute_density(SEXP, SEXP)':
compute_density.cpp:10:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (size_t i=0; i<Distances.size(); ++i) {
                       ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c compute_hyperstats.cpp -o compute_hyperstats.o
compute_hyperstats.cpp: In function 'SEXPREC* compute_hyperstats(SEXP, SEXP, SEXP, SEXP)':
compute_hyperstats.cpp:22:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (Samples.size()!=ncells) { 
                       ^
compute_hyperstats.cpp:60:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (size_t icx=0; icx<curass.size(); ++icx) {
                                   ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c compute_median_int.cpp -o compute_median_int.o
compute_median_int.cpp: In function 'SEXPREC* compute_median_int(SEXP, SEXP, SEXP, SEXP)':
compute_median_int.cpp:22:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (Samples.size()!=ncells) { 
                       ^
compute_median_int.cpp:41:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (curdex <= 0 || curdex > ncells) {
                                       ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c drop_redundant.cpp -o drop_redundant.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o cydar.dll tmp.def compute_density.o compute_hyperstats.o compute_median_int.o drop_redundant.o init.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/cydar.buildbin-libdir/00LOCK-cydar/00new/cydar/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cydar'
    finding HTML links ... done
    CyData                                  html  
    finding level-2 HTML links ... done

    countCells                              html  
    createColorBar                          html  
    dnaGate                                 html  
    expandRadius                            html  
    findFirstSphere                         html  
    intensityRanges                         html  
    interpretSpheres                        html  
    labelSpheres                            html  
    medIntensities                          html  
    multiIntHist                            html  
    neighborDistances                       html  
    normalizeBatch                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6B0iGe/R.INSTALL1b147dce23f3/cydar/man/normalizeBatch.Rd:125: file link 'normalization' in package 'flowCore' does not exist and so has been treated as a topic
    outlierGate                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6B0iGe/R.INSTALL1b147dce23f3/cydar/man/outlierGate.Rd:38: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
    pickBestMarkers                         html  
    plotSphereIntensity                     html  
    plotSphereLogFC                         html  
    poolCells                               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6B0iGe/R.INSTALL1b147dce23f3/cydar/man/poolCells.Rd:26: file link 'estimateLogicle' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6B0iGe/R.INSTALL1b147dce23f3/cydar/man/poolCells.Rd:36: file link 'flowFrame' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6B0iGe/R.INSTALL1b147dce23f3/cydar/man/poolCells.Rd:38: file link 'estimateLogicle' in package 'flowCore' does not exist and so has been treated as a topic
    prepareCellData                         html  
    spatialFDR                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cydar' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c compute_density.cpp -o compute_density.o
compute_density.cpp: In function 'SEXPREC* compute_density(SEXP, SEXP)':
compute_density.cpp:10:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (size_t i=0; i<Distances.size(); ++i) {
                       ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c compute_hyperstats.cpp -o compute_hyperstats.o
compute_hyperstats.cpp: In function 'SEXPREC* compute_hyperstats(SEXP, SEXP, SEXP, SEXP)':
compute_hyperstats.cpp:22:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (Samples.size()!=ncells) { 
                       ^
compute_hyperstats.cpp:60:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (size_t icx=0; icx<curass.size(); ++icx) {
                                   ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c compute_median_int.cpp -o compute_median_int.o
compute_median_int.cpp: In function 'SEXPREC* compute_median_int(SEXP, SEXP, SEXP, SEXP)':
compute_median_int.cpp:22:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (Samples.size()!=ncells) { 
                       ^
compute_median_int.cpp:41:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (curdex <= 0 || curdex > ncells) {
                                       ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c drop_redundant.cpp -o drop_redundant.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o cydar.dll tmp.def compute_density.o compute_hyperstats.o compute_median_int.o drop_redundant.o init.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/cydar.buildbin-libdir/cydar/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cydar' as cydar_1.7.3.zip
* DONE (cydar)
BUILD BIN report for cydar on tokay2

Summary

Command output
