Package: cydar

Version: 1.7.3

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL cydar

StartedAt: 2019-04-08 18:28:15 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 18:29:38 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 82.6 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL cydar
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘cydar’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c compute_density.cpp -o compute_density.o
compute_density.cpp: In function ‘SEXPREC* compute_density(SEXP, SEXP)’:
compute_density.cpp:10:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (size_t i=0; i<Distances.size(); ++i) {
                      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c compute_hyperstats.cpp -o compute_hyperstats.o
compute_hyperstats.cpp: In function ‘SEXPREC* compute_hyperstats(SEXP, SEXP, SEXP, SEXP)’:
compute_hyperstats.cpp:22:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (Samples.size()!=ncells) {
         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
compute_hyperstats.cpp:60:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (size_t icx=0; icx<curass.size(); ++icx) {
                                ˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c compute_median_int.cpp -o compute_median_int.o
compute_median_int.cpp: In function ‘SEXPREC* compute_median_int(SEXP, SEXP, SEXP, SEXP)’:
compute_median_int.cpp:22:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (Samples.size()!=ncells) {
         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
compute_median_int.cpp:41:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (curdex <= 0 || curdex > ncells) {
                                ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c drop_redundant.cpp -o drop_redundant.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c init.cpp -o init.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c utils.cpp -o utils.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o cydar.so compute_density.o compute_hyperstats.o compute_median_int.o drop_redundant.o init.o utils.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-cydar/00new/cydar/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cydar)