Hai Fang
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/Pi |
| Branch: master |
| Last Commit: 803d0b6 |
| Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:33:59 -0400 (Tue, 09 Apr 2019).
| Package 1186/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Pi 1.11.0 Hai Fang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
| Package: Pi |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pi.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pi_1.11.0.tar.gz |
| StartedAt: 2019-04-09 02:51:47 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 02:58:18 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 390.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Pi.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pi.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pi_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/Pi.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Pi/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Pi’ version ‘1.11.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Pi’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE xPierCor: no visible global function definition for 'xCorrelation' Undefined global functions or variables: xCorrelation * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.9-bioc/meat/Pi.Rcheck/00check.log’ for details.
Pi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Pi ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘Pi’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Pi)
Pi.Rcheck/Pi-Ex.timings
| name | user | system | elapsed | |
| cTarget | 0.000 | 0.001 | 0.000 | |
| dTarget | 0 | 0 | 0 | |
| eGSEA | 0.001 | 0.001 | 0.000 | |
| eTarget | 0.000 | 0.000 | 0.001 | |
| pNode | 0 | 0 | 0 | |
| pPerf | 0.000 | 0.000 | 0.001 | |
| sGS | 0 | 0 | 0 | |
| sTarget | 0.000 | 0.000 | 0.001 | |
| xContour | 0.033 | 0.001 | 0.036 | |
| xGSEAbarplot | 0.000 | 0.001 | 0.001 | |
| xGSEAconciser | 0 | 0 | 0 | |
| xGSEAdotplot | 0 | 0 | 0 | |
| xGSsimulator | 0.000 | 0.000 | 0.001 | |
| xMLcaret | 0 | 0 | 0 | |
| xMLcompare | 0.000 | 0.000 | 0.001 | |
| xMLdensity | 0 | 0 | 0 | |
| xMLdotplot | 0.000 | 0.000 | 0.001 | |
| xMLfeatureplot | 0.000 | 0.000 | 0.001 | |
| xMLglmnet | 0.000 | 0.000 | 0.001 | |
| xMLparameters | 0.001 | 0.000 | 0.000 | |
| xMLrandomforest | 0 | 0 | 0 | |
| xMLrename | 0.000 | 0.000 | 0.001 | |
| xMLzoom | 0.000 | 0.001 | 0.000 | |
| xPieplot | 0 | 0 | 0 | |
| xPier | 0.001 | 0.000 | 0.000 | |
| xPierAnno | 0 | 0 | 0 | |
| xPierCor | 0.000 | 0.001 | 0.000 | |
| xPierCross | 0.001 | 0.000 | 0.001 | |
| xPierEvidence | 0 | 0 | 0 | |
| xPierGRs | 0.000 | 0.001 | 0.001 | |
| xPierGSEA | 0.000 | 0.000 | 0.001 | |
| xPierGenes | 0.000 | 0.001 | 0.000 | |
| xPierKEGG | 0.000 | 0.000 | 0.001 | |
| xPierManhattan | 0.000 | 0.001 | 0.001 | |
| xPierMatrix | 0 | 0 | 0 | |
| xPierPathways | 0.000 | 0.001 | 0.001 | |
| xPierROCR | 0 | 0 | 0 | |
| xPierSNPs | 0.001 | 0.000 | 0.001 | |
| xPierSNPsAdv | 0.000 | 0.000 | 0.001 | |
| xPierSNPsConsensus | 0.000 | 0.000 | 0.001 | |
| xPierSubnet | 0.001 | 0.000 | 0.001 | |
| xPierTrack | 0.000 | 0.001 | 0.001 | |
| xPierTrackAdv | 0.001 | 0.000 | 0.000 | |
| xPredictCompare | 0.000 | 0.001 | 0.000 | |
| xPredictROCR | 0.001 | 0.000 | 0.000 | |
| xRWR | 0.001 | 0.000 | 0.002 | |
| xSNP2cGenes | 0.000 | 0.000 | 0.001 | |
| xSNP2eGenes | 0 | 0 | 0 | |
| xVisEvidence | 0 | 0 | 0 | |
| xVisEvidenceAdv | 0.001 | 0.000 | 0.000 | |