Package: Pi

Version: 1.11.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pi.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pi_1.11.0.tar.gz

StartedAt: 2019-04-09 04:23:25 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 04:31:33 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 487.9 seconds

RetCode: 0

Status:  OK

CheckDir: Pi.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pi.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pi_1.11.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/Pi.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Pi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Pi’ version ‘1.11.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Pi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
xPierCor: no visible global function definition for 'xCorrelation'
Undefined global functions or variables:
  xCorrelation
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/Pi.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Pi
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘Pi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Pi)

name	user	system	elapsed
cTarget	0.001	0.000	0.000
dTarget	0	0	0
eGSEA	0.000	0.001	0.000
eTarget	0	0	0
pNode	0.000	0.001	0.001
pPerf	0	0	0
sGS	0.000	0.001	0.001
sTarget	0	0	0
xContour	0.028	0.002	0.030
xGSEAbarplot	0	0	0
xGSEAconciser	0.000	0.000	0.001
xGSEAdotplot	0	0	0
xGSsimulator	0.000	0.000	0.001
xMLcaret	0	0	0
xMLcompare	0.000	0.000	0.001
xMLdensity	0	0	0
xMLdotplot	0.000	0.000	0.001
xMLfeatureplot	0	0	0
xMLglmnet	0.000	0.001	0.001
xMLparameters	0	0	0
xMLrandomforest	0.000	0.001	0.001
xMLrename	0	0	0
xMLzoom	0.000	0.000	0.001
xPieplot	0	0	0
xPier	0.000	0.001	0.001
xPierAnno	0.001	0.001	0.001
xPierCor	0.001	0.000	0.001
xPierCross	0.001	0.001	0.000
xPierEvidence	0.001	0.000	0.000
xPierGRs	0.001	0.001	0.001
xPierGSEA	0.000	0.001	0.001
xPierGenes	0	0	0
xPierKEGG	0.000	0.001	0.001
xPierManhattan	0.001	0.001	0.001
xPierMatrix	0.001	0.000	0.001
xPierPathways	0.001	0.001	0.001
xPierROCR	0	0	0
xPierSNPs	0.000	0.000	0.001
xPierSNPsAdv	0.000	0.001	0.001
xPierSNPsConsensus	0.000	0.000	0.001
xPierSubnet	0.001	0.000	0.001
xPierTrack	0.000	0.001	0.001
xPierTrackAdv	0.000	0.001	0.001
xPredictCompare	0	0	0
xPredictROCR	0.000	0.001	0.001
xRWR	0.002	0.001	0.004
xSNP2cGenes	0	0	0
xSNP2eGenes	0.000	0.000	0.001
xVisEvidence	0.001	0.000	0.001
xVisEvidenceAdv	0.001	0.000	0.001