Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:20:48 -0400 (Tue, 09 Apr 2019).
Package 1134/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
OUTRIDER 1.1.4 Christian Mertes
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: OUTRIDER |
Version: 1.1.4 |
Command: rm -rf OUTRIDER.buildbin-libdir && mkdir OUTRIDER.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OUTRIDER_1.1.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R OUTRIDER.buildbin-libdir |
StartedAt: 2019-04-09 07:29:20 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 07:30:50 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 90.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: OUTRIDER_1.1.4.tgz |
PackageFileSize: 2.215 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf OUTRIDER.buildbin-libdir && mkdir OUTRIDER.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OUTRIDER_1.1.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R OUTRIDER.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OUTRIDER.buildbin-libdir OUTRIDER_1.1.4.tar.gz' >>>>>>> * installing *source* package ‘OUTRIDER’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o loss_n_gradient_functions.cpp:41:19: warning: unused variable 'c' [-Wunused-variable] double b, ll, c; ^ loss_n_gradient_functions.cpp:68:15: warning: unused variable 'c' [-Wunused-variable] double b, c; ^ 2 warnings generated. clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o OUTRIDER.so RcppExports.o loss_n_gradient_functions.o -fopenmp -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/OUTRIDER.buildbin-libdir/00LOCK-OUTRIDER/00new/OUTRIDER/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OUTRIDER) >>>>>>> >>>>>>> FIXING LINKS FOR OUTRIDER.buildbin-libdir/OUTRIDER/libs//OUTRIDER.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs//OUTRIDER.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs//OUTRIDER.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs//OUTRIDER.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs//OUTRIDER.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs//OUTRIDER.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs//OUTRIDER.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs//OUTRIDER.so"