Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:28:51 -0400 (Tue, 09 Apr 2019).
Package 442/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DMRScan 1.9.0 Christian M Page
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: DMRScan |
Version: 1.9.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DMRScan.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings DMRScan_1.9.0.tar.gz |
StartedAt: 2019-04-09 02:22:02 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 02:37:40 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 937.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DMRScan.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DMRScan.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings DMRScan_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/DMRScan.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'DMRScan/DESCRIPTION' ... OK * this is package 'DMRScan' version '1.9.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DMRScan' can be installed ... OK * checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: data 4.9Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed DMRScan_package 120.39 0.37 120.85 DMRScan_slidingWindow 112.07 0.35 112.47 makeCpGregions 79.17 0.28 79.47 makeCpGgenes 53.62 0.12 53.75 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed DMRScan_slidingWindow 146.36 0.09 146.72 DMRScan_package 107.01 0.17 107.19 makeCpGregions 103.34 0.09 103.59 makeCpGgenes 73.00 0.08 73.08 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/DMRScan.Rcheck/00check.log' for details.
DMRScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DMRScan_1.9.0.tar.gz && rm -rf DMRScan.buildbin-libdir && mkdir DMRScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRScan.buildbin-libdir DMRScan_1.9.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DMRScan_1.9.0.zip && rm DMRScan_1.9.0.tar.gz DMRScan_1.9.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3202k 100 3202k 0 0 31.5M 0 --:--:-- --:--:-- --:--:-- 33.9M install for i386 * installing *source* package 'DMRScan' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DMRScan' finding HTML links ... done DMRScan.methylationData html DMRScan.phenotypes html DMRScan_package html finding level-2 HTML links ... done DMRScan_slidingWindow html Rt-methods html St-methods html estimateThreshold html makeCpGgenes html makeCpGregions html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DMRScan' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DMRScan' as DMRScan_1.9.0.zip * DONE (DMRScan) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'DMRScan' successfully unpacked and MD5 sums checked
DMRScan.Rcheck/tests_i386/testthat.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(DMRScan) > > test_check("DMRScan") == testthat results =========================================================== OK: 1 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 4.32 0.37 4.68 |
DMRScan.Rcheck/tests_x64/testthat.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(DMRScan) > > test_check("DMRScan") == testthat results =========================================================== OK: 1 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 4.20 0.21 4.40 |
DMRScan.Rcheck/examples_i386/DMRScan-Ex.timings
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DMRScan.Rcheck/examples_x64/DMRScan-Ex.timings
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