Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:47:18 -0400 (Tue, 09 Apr 2019).
Package 442/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DMRScan 1.9.0 Christian M Page
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: DMRScan |
Version: 1.9.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:DMRScan.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings DMRScan_1.9.0.tar.gz |
StartedAt: 2019-04-09 00:08:22 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 00:16:43 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 500.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DMRScan.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:DMRScan.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings DMRScan_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/DMRScan.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DMRScan/DESCRIPTION’ ... OK * this is package ‘DMRScan’ version ‘1.9.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DMRScan’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: data 4.9Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed DMRScan_package 135.037 0.104 136.667 DMRScan_slidingWindow 122.723 0.084 122.865 makeCpGregions 77.583 0.084 77.733 makeCpGgenes 59.048 0.004 59.076 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.9-bioc/meat/DMRScan.Rcheck/00check.log’ for details.
DMRScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL DMRScan ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘DMRScan’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DMRScan)
DMRScan.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(DMRScan) > > test_check("DMRScan") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 1 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 3.636 0.175 3.795
DMRScan.Rcheck/DMRScan-Ex.timings
name | user | system | elapsed | |
DMRScan.methylationData | 0.551 | 0.043 | 0.612 | |
DMRScan.phenotypes | 0.002 | 0.000 | 0.003 | |
DMRScan_package | 135.037 | 0.104 | 136.667 | |
DMRScan_slidingWindow | 122.723 | 0.084 | 122.865 | |
Rt-methods | 0 | 0 | 0 | |
St-methods | 0 | 0 | 0 | |
estimateThreshold | 0.054 | 0.002 | 0.056 | |
makeCpGgenes | 59.048 | 0.004 | 59.076 | |
makeCpGregions | 77.583 | 0.084 | 77.733 | |