Package: CNPBayes

Version: 1.13.5

Command: chmod a+r CNPBayes -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNPBayes

StartedAt: 2019-04-08 23:03:26 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 23:06:40 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 194.1 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   chmod a+r CNPBayes -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNPBayes
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* checking for file 'CNPBayes/DESCRIPTION' ... OK
* preparing 'CNPBayes':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
duplicated vignette title:
  'Overview of CNPBayes package'

--- re-building 'Convergence.Rmd' using rmarkdown
PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
==> 1 page written on `Convergence_files/figure-latex/chains-1.pdf'.
PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
==> 1 page written on `Convergence_files/figure-latex/chains-2.pdf'.
Warning: LaTeX Warning: You have requested package `C:/Users/biocbuild/bbs-3.9-bioc/R/li
brary/BiocStyle/resources/tex/Bioconductor',
               but the package provides `Bioconductor'.
Package geometry Warning: Over-specification in `h'-direction.
    `width' (384.1122pt) is ignored.
Package Fancyhdr Warning: \fancyhead's `E' option without twoside option is use
less on input line 173.
--- finished re-building 'Convergence.Rmd'

--- re-building 'Implementation.Rmd' using rmarkdown
PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
==> 1 page written on `Implementation_files/figure-latex/graph-marginal-1.pdf'.
PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
==> 1 page written on `Implementation_files/figure-latex/mapping-1.pdf'.
PDFCROP 1.38, 2012/11/02 - Copyright (c) 2002-2012 by Heiko Oberdiek.
==> 1 page written on `Implementation_files/figure-latex/ggMixture-1.pdf'.
Warning: LaTeX Warning: You have requested package `C:/Users/biocbuild/bbs-3.9-bioc/R/li
brary/BiocStyle/resources/tex/Bioconductor',
               but the package provides `Bioconductor'.
Package geometry Warning: Over-specification in `h'-direction.
    `width' (384.1122pt) is ignored.
Package Fancyhdr Warning: \fancyhead's `E' option without twoside option is use
less on input line 173.
--- finished re-building 'Implementation.Rmd'

--- re-building 'Overview.Rmd' using rmarkdown
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: DelayedArray
Loading required package: matrixStats

Attaching package: 'matrixStats'

The following objects are masked from 'package:Biobase':

    anyMissing, rowMedians

The following object is masked from 'package:dplyr':

    count

Loading required package: BiocParallel

Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following objects are masked from 'package:base':

    aperm, apply, rowsum

Registered S3 method overwritten by 'rvest':
  method            from
  read_xml.response xml2
-- Attaching packages ------------------------------------ tidyverse 1.2.1 --
v tibble  2.1.1     v purrr   0.3.2
v readr   1.3.1     v stringr 1.4.0
v tibble  2.1.1     v forcats 0.4.0
-- Conflicts --------------------------------------- tidyverse_conflicts() --
x ggplot2::Position()  masks BiocGenerics::Position(), base::Position()
x dplyr::collapse()    masks IRanges::collapse()
x Biobase::combine()   masks dplyr::combine(), BiocGenerics::combine()
x matrixStats::count() masks dplyr::count()
x dplyr::desc()        masks IRanges::desc()
x tidyr::expand()      masks S4Vectors::expand()
x dplyr::filter()      masks stats::filter()
x dplyr::first()       masks S4Vectors::first()
x dplyr::lag()         masks stats::lag()
x purrr::reduce()      masks GenomicRanges::reduce(), IRanges::reduce()
x dplyr::rename()      masks S4Vectors::rename()
x purrr::simplify()    masks DelayedArray::simplify()
x dplyr::slice()       masks IRanges::slice()
Loading required package: VanillaICE
Quitting from lines 43-47 (Overview.Rmd) 
Error: processing vignette 'Overview.Rmd' failed with diagnostics:
unable to find required package 'VanillaICE'
--- failed re-building 'Overview.Rmd'

SUMMARY: processing the following file failed:
  'Overview.Rmd'

Error: Vignette re-building failed.
Error: Duplicate vignette titles.
  Ensure that the %\VignetteIndexEntry lines in the vignette sources
  correspond to the vignette titles.
Execution halted