Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:25:15 -0400 (Tue, 09 Apr 2019).
Package 302/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CNPBayes 1.13.5 Jacob Carey
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK |
Package: CNPBayes |
Version: 1.13.5 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CNPBayes_1.13.5.tar.gz && rm -rf CNPBayes.buildbin-libdir && mkdir CNPBayes.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNPBayes.buildbin-libdir CNPBayes_1.13.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CNPBayes_1.13.5.zip && rm CNPBayes_1.13.5.tar.gz CNPBayes_1.13.5.zip |
StartedAt: 2019-04-08 19:48:19 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 19:52:50 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 271.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CNPBayes_1.13.5.tar.gz && rm -rf CNPBayes.buildbin-libdir && mkdir CNPBayes.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNPBayes.buildbin-libdir CNPBayes_1.13.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CNPBayes_1.13.5.zip && rm CNPBayes_1.13.5.tar.gz CNPBayes_1.13.5.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 893k 100 893k 0 0 12.1M 0 --:--:-- --:--:-- --:--:-- 13.4M install for i386 * installing *source* package 'CNPBayes' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c miscfunctions.cpp -o miscfunctions.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c multibatch.cpp -o multibatch.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c multibatch_pooledvar.cpp -o multibatch_pooledvar.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c multibatch_reduced.cpp -o multibatch_reduced.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pooledvar_reduced.cpp -o pooledvar_reduced.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c triomodel.cpp -o triomodel.o Loading required package: Rcpp Loading required package: Rcpp Loading required package: Rcpp Loading required package: Rcpp C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o CNPBayes.dll tmp.def RcppExports.o miscfunctions.o multibatch.o multibatch_pooledvar.o multibatch_reduced.o pooledvar_reduced.o triomodel.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CNPBayes.buildbin-libdir/00LOCK-CNPBayes/00new/CNPBayes/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'alpha' in package 'CNPBayes' in method for 'convergence' with signature '"MultiBatchList"': no definition for class "MultiBatchList" Creating a generic function from function 'sigma' in package 'CNPBayes' Note: wrong number of arguments to '/' ** help *** installing help indices converting help for package 'CNPBayes' finding HTML links ... done BatchModelExample html CNPBayes html CopyNumber-classes html CopyNumber-methods html Defunct-classes html Hyperparameters-class html Hyperparameters html HyperparametersBatch-class html HyperparametersMarginal-class html HyperparametersMultiBatch-class html HyperparametersMultiBatch html HyperparametersSingleBatch-class html HyperparametersSingleBatch html HyperparametersTrios-class html HyperparametersTrios html MBP html MarginalModelExample html McmcChains-class html McmcParams-class html McmcParams html MixtureModel-class html MultiBatch-class html MultiBatchModel-class html MultiBatchModel html MultiBatchModelExample html MultiBatchPooledExample html SingleBatchModel-class html SingleBatchModel html SingleBatchModelExample html TrioBatchModel html bafLikelihood html batch-method html bayesFactor html bic-method html burnin-method html chains-method html chromosome html collapseBatch-method html consensusCNP html copyNumber html dfr-method html downSample html eta.0-method html extract-methods html findSurrogates-MultiBatch-method html ggplot-functions html gibbs html hyperParams-method html iter-method html k-method html label_switch html logBayesFactor html logPrior-method html log_lik-method html m2.0-method html mapCnProbability html mapParams html map_z html mapping html marginalLik html marginalLikelihood-method html marginal_lik html mcmcParams-method html mlParams html modelName-MixtureModel-method html modes-method html mu-method html muMean html muc html nStarts-method html names-methods html nu.0-method html numberObs-method html oned-method html orderModels html p-MixtureModel-method html pic html posteriorPredictive html posteriorSimulation-method html posterior_cases html pp html probCopyNumber html probz-method html probzpar-method html qInverseTau2 html saveBatch html sigma html sigma2-method html sigma2.0-method html sigmac html simulateBatchData html simulateData html singleBatchGuided-MultiBatchList-MultiBatch-method html tau html tau2-method html tauMean html tauc html theta-method html thin-method html tile-functions html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwltFHF/R.INSTALL23c4541e6c11/CNPBayes/man/tile-functions.Rd:28: file link 'ntile' in package 'dplyr' does not exist and so has been treated as a topic triodata_lrr-method html upSample2 html y-method html z-method html zfreq-method html zfreqpar-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CNPBayes' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c miscfunctions.cpp -o miscfunctions.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c multibatch.cpp -o multibatch.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c multibatch_pooledvar.cpp -o multibatch_pooledvar.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c multibatch_reduced.cpp -o multibatch_reduced.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pooledvar_reduced.cpp -o pooledvar_reduced.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c triomodel.cpp -o triomodel.o Loading required package: Rcpp Loading required package: Rcpp Loading required package: Rcpp Loading required package: Rcpp C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o CNPBayes.dll tmp.def RcppExports.o miscfunctions.o multibatch.o multibatch_pooledvar.o multibatch_reduced.o pooledvar_reduced.o triomodel.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CNPBayes.buildbin-libdir/CNPBayes/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'CNPBayes' as CNPBayes_1.13.5.zip * DONE (CNPBayes) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'CNPBayes' successfully unpacked and MD5 sums checked