Back to Long Tests report for BioC 3.14

This page was generated on 2022-04-09 21:00:02 -0400 (Sat, 09 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4322
riesling1Windows Server 2019 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4108
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4135
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbLipidmaps on nebbiolo2


To the developers/maintainers of the biodbLipidmaps package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 8/19HostnameOS / ArchCHECK
biodbLipidmaps 1.0.1  (landing page)
Pierrick Roger
Snapshot Date: 2022-04-09 06:55:01 -0400 (Sat, 09 Apr 2022)
git_url: https://git.bioconductor.org/packages/biodbLipidmaps
git_branch: RELEASE_3_14
git_last_commit: bda9e29
git_last_commit_date: 2021-10-27 16:13:11 -0400 (Wed, 27 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK  
riesling1Windows Server 2019 Standard / x64  OK  
machv2macOS 10.14.6 Mojave / x86_64  OK  

Summary

Package: biodbLipidmaps
Version: 1.0.1
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.0.1.tar.gz
StartedAt: 2022-04-09 08:06:00 -0400 (Sat, 09 Apr 2022)
EndedAt: 2022-04-09 08:09:46 -0400 (Sat, 09 Apr 2022)
EllapsedTime: 226.6 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbLipidmaps.Rcheck
Warnings: 0

Tests output

biodbLipidmaps.Rcheck/tests/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'license()' or 'licence()' for distribution details.

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbLipidmaps)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbLipidmaps")
biodb.INFO [2022-04-09 08:06:29.956][biodb::testContext] 
biodb.INFO [2022-04-09 08:06:29.957][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:06:29.958][biodb::testContext] Test context - Generic long tests
biodb.INFO [2022-04-09 08:06:29.958][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:06:29.959][biodb::testContext] 
biodb.INFO [2022-04-09 08:06:29.974][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-09 08:06:29.975][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-09 08:06:29.980][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:06:29.981][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-09 08:06:29.982][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-09 08:06:29.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:29.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:29.984][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-09 08:06:29.998][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-09 08:06:29.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:29.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.001][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-09 08:06:30.002][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-09 08:06:30.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.004][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-09 08:06:30.005][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-09 08:06:30.006][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-09 08:06:30.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.008][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-09 08:06:30.009][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-09 08:06:30.010][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-09 08:06:30.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.013][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-09 08:06:30.013][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-09 08:06:30.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.016][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-09 08:06:30.017][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-09 08:06:30.017][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-09 08:06:30.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.020][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-09 08:06:30.021][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-09 08:06:30.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.024][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-09 08:06:30.024][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-09 08:06:30.025][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-09 08:06:30.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.028][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:06:30.028][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-09 08:06:30.029][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-09 08:06:30.030][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-09 08:06:30.031][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-09 08:06:30.031][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-09 08:06:30.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.034][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-09 08:06:30.035][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-09 08:06:30.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.038][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-09 08:06:30.038][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-09 08:06:30.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.041][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-09 08:06:30.042][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-09 08:06:30.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.044][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-09 08:06:30.045][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-09 08:06:30.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.048][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-09 08:06:30.049][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-09 08:06:30.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.051][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:06:30.052][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-09 08:06:30.057][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-09 08:06:30.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.060][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-09 08:06:30.060][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-09 08:06:30.061][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-09 08:06:30.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.066][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-09 08:06:30.093][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.105][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-09 08:06:30.106][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.107][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:06:30.107][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.108][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.109][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.110][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.111][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:06:30.111][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:06:30.112][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.113][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-09 08:06:30.114][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:06:30.114][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.115][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.116][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:06:30.116][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:06:30.116][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:06:30.116][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:06:30.116][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:06:30.117][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:06:30.117][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.118][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.119][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:06:30.120][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.121][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.122][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:06:30.123][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:06:30.124][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.125][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.125][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-09 08:06:30.127][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.128][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:06:30.128][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.129][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:06:30.130][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.131][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.137][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.137][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.138][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:06:30.139][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:06:30.139][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.140][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-09 08:06:30.141][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:06:30.141][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.142][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.143][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:06:30.143][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:06:30.143][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:06:30.143][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:06:30.143][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:06:30.143][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:06:30.144][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.144][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.145][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:06:30.146][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.147][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.148][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.148][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:06:30.149][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:06:30.149][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.150][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.151][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-09 08:06:30.152][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.153][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-09 08:06:30.153][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.154][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:06:30.155][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.155][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.156][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.157][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.157][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:06:30.158][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:06:30.159][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.159][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-09 08:06:30.160][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:06:30.161][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.161][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.162][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.163][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:06:30.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.164][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.165][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:06:30.165][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.166][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.166][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.167][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.168][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:06:30.168][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:06:30.169][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.170][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.171][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-09 08:06:30.175][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.176][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:06:30.177][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.178][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:06:30.178][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.179][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.180][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.180][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.181][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:06:30.182][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:06:30.182][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.183][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-09 08:06:30.184][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:06:30.184][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.185][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.186][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.186][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:06:30.187][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.187][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.188][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:06:30.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.190][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.191][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.191][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:06:30.192][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:06:30.193][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.193][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.196][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:06:30.197][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.248][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-09 08:06:30.252][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-09 08:06:30.253][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-09 08:06:30.254][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-09 08:06:30.255][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:06:30.256][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-09 08:06:30.257][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-09 08:06:30.258][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-09 08:06:30.258][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-09 08:06:30.259][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-09 08:06:30.260][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:06:30.261][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-09 08:06:30.262][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-09 08:06:30.263][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-09 08:06:30.264][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-09 08:06:30.265][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-09 08:06:30.266][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-09 08:06:30.267][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-09 08:06:30.268][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:06:30.269][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-09 08:06:30.270][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-09 08:06:30.271][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-09 08:06:30.272][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-09 08:06:30.273][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-09 08:06:30.274][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-09 08:06:30.274][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-09 08:06:30.275][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-09 08:06:30.276][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-09 08:06:30.277][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-09 08:06:30.278][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-09 08:06:30.279][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-09 08:06:30.280][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-09 08:06:30.281][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-09 08:06:30.282][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-09 08:06:30.283][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-09 08:06:30.284][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-09 08:06:30.285][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-09 08:06:30.286][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-09 08:06:30.287][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-09 08:06:30.288][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-09 08:06:30.289][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-09 08:06:30.290][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-09 08:06:30.291][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-09 08:06:30.292][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-09 08:06:30.293][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-09 08:06:30.293][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-09 08:06:30.294][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-09 08:06:30.295][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-09 08:06:30.296][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-09 08:06:30.297][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-09 08:06:30.298][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-09 08:06:30.299][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-09 08:06:30.300][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-09 08:06:30.301][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-09 08:06:30.302][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-09 08:06:30.303][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-09 08:06:30.304][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-09 08:06:30.305][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-09 08:06:30.306][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-09 08:06:30.307][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-09 08:06:30.308][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-09 08:06:30.313][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-09 08:06:30.314][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-09 08:06:30.314][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-09 08:06:30.315][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-09 08:06:30.316][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-09 08:06:30.317][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:06:30.318][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:06:30.319][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-09 08:06:30.320][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-09 08:06:30.321][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-09 08:06:30.322][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-09 08:06:30.323][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-09 08:06:30.324][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-09 08:06:30.324][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-09 08:06:30.325][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-09 08:06:30.326][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-09 08:06:30.327][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-09 08:06:30.328][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-09 08:06:30.329][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-09 08:06:30.330][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-09 08:06:30.331][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-09 08:06:30.332][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-09 08:06:30.336][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-09 08:06:30.337][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-09 08:06:30.339][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:06:30.340][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.341][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:30.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.417][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2022-04-09 08:06:30.423][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2022-04-09 08:06:30.425][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.425][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.426][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.427][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:06:30.427][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.428][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.429][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.430][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.430][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:06:30.431][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:06:30.432][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.432][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2022-04-09 08:06:30.433][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2022-04-09 08:06:30.434][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:30.435][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:06:30.435][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:06:30.436][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:06:30.436][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.437][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.438][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:06:30.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:30.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:30.439][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:06:30.440][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-04-09 08:06:30.440][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2022-04-09 08:06:30.441][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:06:30.441][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:06:30.442][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:30.443][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:06:30.447][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2022-04-09 08:06:30.448][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-09 08:06:30.465][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2022-04-09 08:06:30.466][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2022-04-09 08:06:30.469][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2022-04-09 08:06:30.472][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2022-04-09 08:06:30.475][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-04-09 08:06:30.476][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-04-09 08:06:30.477][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2022-04-09 08:06:30.478][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2022-04-09 08:06:30.506][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:30.507][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-04-09 08:06:30.507][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:30.508][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:30.510][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000001-content.tsv".
biodb.DEBUG[2022-04-09 08:06:30.517][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:30.520][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:06:30.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.647][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:06:30.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.667][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.734][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.737][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.769][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000001.
biodb.TRACE[2022-04-09 08:06:30.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:30.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:30.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:30.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.840][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.861][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.879][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.896][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.897][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.914][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.916][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.978][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.983][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.984][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:30.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.989][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.999][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.000][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.018][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000002-content.tsv".
biodb.DEBUG[2022-04-09 08:06:31.047][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:31.048][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:06:31.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.083][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.110][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:31.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.116][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:06:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.166][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.169][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.174][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.199][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000002.
biodb.TRACE[2022-04-09 08:06:31.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.223][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:31.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:31.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.234][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.265][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.286][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.304][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.322][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.322][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.339][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.406][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.417][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.417][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.422][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.424][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.432][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.443][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA08040013-content.tsv".
biodb.DEBUG[2022-04-09 08:06:31.450][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:31.451][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:06:31.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:31.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.528][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.562][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:06:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.573][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.600][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.603][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.608][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.634][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA08040013.
biodb.TRACE[2022-04-09 08:06:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:31.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:31.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:31.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:31.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.681][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:31.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.704][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.721][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.723][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.739][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.740][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.757][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.759][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.772][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.775][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.778][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.803][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.806][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.811][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.812][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.814][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.859][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.870][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.871][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.875][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.880][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.881][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.886][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.887][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.896][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.901][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.903][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:31.907][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:31.908][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-04-09 08:06:31.909][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:31.909][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:06:31.911][private$loadEntries] Creating entries from ids [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.DEBUG[2022-04-09 08:06:31.916][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-09 08:06:31.918][cch$loadFileContent] Trying to load 3 files from cache: [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.TRACE[2022-04-09 08:06:31.919][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-04-09 08:06:31.921][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv, /home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv, /home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA08040013.tsv".
biodb.DEBUG[2022-04-09 08:06:31.922][conn$getEntryContent] 3 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:31.942][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 3 content(s).
biodb.DEBUG[2022-04-09 08:06:31.943][self$createEntryFromContent] Parsing 3 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:06:31.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.965][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.997][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.031][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.034][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:06:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.042][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.128][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.131][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:32.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:32.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:32.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.157][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.160][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:06:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:32.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.212][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:32.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.270][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:32.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:32.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.314][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:32.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.348][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.387][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.392][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:32.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.437][self$createEntryFromContent] Accession numbers: LMFA00000001, LMFA00000002, LMFA08040013.
biodb.TRACE[2022-04-09 08:06:32.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:32.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:32.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:32.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:32.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:32.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:32.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:32.472][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:32.472][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-04-09 08:06:32.473][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:32.473][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:32.475][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.477][ef$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.478][function(conn, opt)] Testing searchForEntries() with entry "LMFA00000001" and field "name".
biodb.TRACE[2022-04-09 08:06:32.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.504][function(conn, opt)] With value "2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:06:32.555][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:06:32.566][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:32.567][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:32.567][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride".
biodb.TRACE[2022-04-09 08:06:34.110][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride).
biodb.DEBUG[2022-04-09 08:06:34.775][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:34.788][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content"
biodb.TRACE[2022-04-09 08:06:34.815][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.request"
biodb.DEBUG[2022-04-09 08:06:34.822][function(conn, opt)] With found IDs [1]: "LMFA00000001".
biodb.TRACE[2022-04-09 08:06:34.830][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.831][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.832][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:34.834][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:34.834][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-04-09 08:06:34.835][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:34.836][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:06:34.940][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:34.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-04-09 08:06:34.954][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:34.955][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.INFO [2022-04-09 08:06:34.965][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:34.966][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-04-09 08:06:34.966][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:34.967][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:34.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:34.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:34.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:35.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:35.037][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:35.038][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-04-09 08:06:35.038][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:35.039][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:35.043][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:35.043][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-04-09 08:06:35.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:35.045][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:35.047][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:35.048][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-04-09 08:06:35.049][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:35.049][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:06:35.051][function(conn, opt)] Trying to download "https://www.lipidmaps.org/data?LMID=LMFA00000001".
biodb.DEBUG[2022-04-09 08:06:35.812][getUrlContent] Use RCurl for downloading content of URL https://www.lipidmaps.org/data?LMID=LMFA00000001.
biodb.INFO [2022-04-09 08:06:36.546][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:36.547][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-04-09 08:06:36.548][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:36.549][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:36.552][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:36.553][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-04-09 08:06:36.553][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:36.554][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.673][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:06:36.675][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:36.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-04-09 08:06:36.677][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.678][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2022-04-09 08:06:36.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:06:36.703][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:36.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-04-09 08:06:36.705][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.706][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.TRACE[2022-04-09 08:06:36.717][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:36.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:36.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.784][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-04-09 08:06:36.796][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:36.797][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:36.807][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-04-09 08:06:41.314][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-04-09 08:06:51.382][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:51.390][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.content"
biodb.TRACE[2022-04-09 08:06:51.406][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.request"
biodb.DEBUG[2022-04-09 08:06:51.673][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-04-09 08:06:51.675][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:51.676][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:51.677][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-04-09 08:06:52.321][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-04-09 08:06:52.985][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:52.991][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.content"
biodb.TRACE[2022-04-09 08:06:52.999][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.request"
biodb.DEBUG[2022-04-09 08:06:53.044][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.DEBUG[2022-04-09 08:06:53.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:53.046][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:53.047][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.TRACE[2022-04-09 08:06:53.682][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06).
biodb.DEBUG[2022-04-09 08:06:54.357][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:06:54.365][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.content"
biodb.TRACE[2022-04-09 08:06:54.375][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.request"
biodb.TRACE[2022-04-09 08:06:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:54.407][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:54.408][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-04-09 08:06:54.408][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:54.409][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:54.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:54.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:54.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:54.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:54.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:54.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:54.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:54.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:54.582][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:06:54.584][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:54.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:06:54.585][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:54.641][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:06:55.051][private$loadEntries] Creating entries from ids [1]: "LMFA00000003".
biodb.DEBUG[2022-04-09 08:06:55.083][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:55.085][cch$loadFileContent] Trying to load 1 files from cache: [1]: "LMFA00000003".
biodb.TRACE[2022-04-09 08:06:55.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:55.087][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000003.tsv".
biodb.DEBUG[2022-04-09 08:06:55.088][conn$getEntryContent] 1 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:55.105][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:55.106][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:06:55.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:55.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:55.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:55.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:55.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:55.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:55.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:06:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:55.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:06:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:55.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:06:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:06:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.208][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:06:55.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:06:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.224][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.226][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.232][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:55.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:55.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:55.264][self$createEntryFromContent] Accession numbers: LMFA00000003.
biodb.DEBUG[2022-04-09 08:06:55.270][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:55.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:55.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:55.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:55.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:55.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:55.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:55.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.279][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.282][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.282][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:55.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:55.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:55.284][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.285][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.285][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.287][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.288][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.290][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.291][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.291][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.292][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.294][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:06:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.300][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.308][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:06:55.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:55.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:55.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:55.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:55.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:55.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:55.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:55.313][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.316][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.318][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.319][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:55.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:55.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:55.321][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.322][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.322][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.324][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.325][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.327][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.327][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.328][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.329][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.331][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:06:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.334][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.337][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:06:55.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:55.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:55.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:55.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:55.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:55.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:55.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.348][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.351][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.351][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:55.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:55.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:55.353][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.354][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.354][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.364][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.364][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.366][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.367][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:06:55.367][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.368][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.370][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:06:55.371][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.376][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:06:55.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:55.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:55.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:06:55.379][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:55.380][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:55.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:55.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:55.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:55.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:55.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:55.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:55.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:55.500][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:06:55.502][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:06:55.502][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:06:55.503][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.TRACE[2022-04-09 08:07:00.218][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01).
biodb.DEBUG[2022-04-09 08:07:10.424][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:10.440][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content"
biodb.TRACE[2022-04-09 08:07:10.470][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.request"
biodb.DEBUG[2022-04-09 08:07:10.709][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:10.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:10.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:10.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:10.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:10.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:10.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:10.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:10.737][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.757][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.758][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:10.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:10.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:10.760][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.761][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.762][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.764][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.765][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.767][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.783][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.783][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.784][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.786][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:10.787][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.792][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:10.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:10.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:10.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:10.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:10.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:10.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:10.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:10.801][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.804][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.806][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.807][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:10.807][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:10.808][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:10.809][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.809][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.810][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.812][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.813][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.815][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.816][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.816][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.817][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.819][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:10.820][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.828][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:10.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:10.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:10.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:10.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:10.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:10.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:10.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.836][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.839][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.839][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:10.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:10.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:10.841][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.842][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.843][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.844][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.845][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.847][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.848][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:10.848][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.849][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.851][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.854][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.857][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:10.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:10.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:10.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:10.861][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:10.861][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:10.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:10.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:10.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:10.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:10.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:10.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:10.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:10.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:07:10.992][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:10.993][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:10.994][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.TRACE[2022-04-09 08:07:15.555][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01).
biodb.DEBUG[2022-04-09 08:07:25.851][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:25.868][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content"
biodb.TRACE[2022-04-09 08:07:25.901][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.request"
biodb.DEBUG[2022-04-09 08:07:26.143][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:26.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.151][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.157][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.158][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.160][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.161][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.161][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.164][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.164][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.166][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.167][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.168][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.169][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.171][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:26.171][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.174][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.177][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:26.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.187][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.190][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.192][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.193][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.195][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.196][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.196][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.199][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.199][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.201][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.202][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.203][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.204][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.206][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:26.207][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.213][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:26.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.226][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.229][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.230][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:26.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:26.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:26.232][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.232][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.233][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.235][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.236][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.238][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.239][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:26.240][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.241][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.243][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:26.244][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.247][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:26.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:26.267][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:26.267][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:07:26.274][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:26.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:26.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:26.283][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:26.284][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-04-09 08:07:26.285][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:26.285][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:26.288][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:26.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:26.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.291][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:26.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:26.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:26.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:26.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:26.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:26.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:26.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:26.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:26.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:26.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:26.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:26.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:26.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:26.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:26.528][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.DEBUG[2022-04-09 08:07:26.530][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:26.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5652f5994fce967a05a065a71bac3ed6".
biodb.TRACE[2022-04-09 08:07:26.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:26.585][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.content".
biodb.DEBUG[2022-04-09 08:07:27.035][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:27.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.050][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.051][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.052][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.053][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.054][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.055][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.057][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.058][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.060][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.061][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.061][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.062][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.065][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:27.065][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.069][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.072][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.075][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:27.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.082][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.085][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.088][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.089][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.090][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.091][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.091][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.092][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.094][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.095][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.097][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.098][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.099][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.100][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.102][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:27.103][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.109][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:27.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:27.119][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.125][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.126][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:27.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:27.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:27.128][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.129][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.130][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.132][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.133][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.135][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.136][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:27.137][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.138][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.141][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:27.141][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.148][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:27.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:27.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:27.166][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:27.167][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:27.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:27.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:27.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:27.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:27.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:27.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:27.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:27.302][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.DEBUG[2022-04-09 08:07:27.305][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:27.306][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:27.307][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.TRACE[2022-04-09 08:07:31.988][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911).
biodb.DEBUG[2022-04-09 08:07:42.144][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:42.160][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.content"
biodb.TRACE[2022-04-09 08:07:42.194][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.request"
biodb.DEBUG[2022-04-09 08:07:42.470][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:42.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:42.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:42.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:42.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:42.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:42.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:42.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.484][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.485][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:42.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:42.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:42.487][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.487][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.488][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.490][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.491][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.493][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.494][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.494][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.495][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.497][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:42.498][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.501][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.504][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:42.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:42.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:42.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:42.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:42.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:42.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:42.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:42.513][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.519][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.520][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:42.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:42.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:42.522][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.522][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.523][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.525][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.526][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.528][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.529][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.530][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.530][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.532][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:42.533][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.536][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.539][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:42.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:42.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:42.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:42.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:42.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:42.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:42.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.554][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.555][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:42.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:42.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:42.557][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.558][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.558][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.561][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.561][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.563][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.564][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:42.565][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.566][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.568][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.572][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:42.578][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:42.592][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:42.593][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:42.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:42.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:42.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:42.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:42.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:42.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:42.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:42.729][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.DEBUG[2022-04-09 08:07:42.731][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:42.732][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:42.733][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.TRACE[2022-04-09 08:07:47.275][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435).
biodb.DEBUG[2022-04-09 08:07:57.556][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:57.570][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.content"
biodb.TRACE[2022-04-09 08:07:57.595][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.request"
biodb.DEBUG[2022-04-09 08:07:57.794][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:57.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:57.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:57.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:57.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:57.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:57.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:57.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.806][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.807][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:57.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:57.808][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:57.809][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.809][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.810][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.812][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.813][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.815][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.815][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.816][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.817][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.819][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:57.819][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:57.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:57.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:57.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:57.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:57.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:57.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:57.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.836][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.838][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.839][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:57.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:57.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:57.841][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.841][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.842][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.844][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.845][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.846][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.847][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.848][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.848][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.850][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:57.851][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.856][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.859][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:57.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:57.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:57.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:57.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:57.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:57.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:57.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.870][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.870][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:57.871][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:57.872][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:57.872][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.873][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.874][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.876][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.876][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.878][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.879][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:57.879][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.880][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.882][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.885][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.888][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:57.901][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:57.902][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:07:57.907][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:57.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:57.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.910][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:57.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.912][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:57.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:57.916][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:57.916][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-04-09 08:07:57.917][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:57.918][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:57.920][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:57.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:57.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.923][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.925][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:57.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:57.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:57.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:57.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:57.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:57.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:57.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:57.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:57.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:57.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:58.089][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:07:58.091][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:58.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:07:58.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:58.124][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:07:58.513][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:58.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:58.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:58.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:58.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:58.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:58.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:58.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.543][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.543][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:58.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:58.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:58.545][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.546][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.547][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.549][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.550][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.552][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.552][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.553][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.554][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.556][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:58.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:58.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:58.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:58.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:58.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:58.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:58.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:58.571][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.574][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.577][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.578][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:58.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:58.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:58.580][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.581][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.581][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.583][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.584][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.586][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.587][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.588][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.588][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.590][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:58.591][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.597][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:58.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:58.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:58.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:58.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:58.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:58.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:58.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:58.606][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.609][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.611][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.612][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:58.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:58.613][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:58.614][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.615][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.615][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.618][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.618][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.621][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.621][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:58.622][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.623][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.625][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:58.635][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:58.635][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:58.636][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:58.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:58.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:58.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:58.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:58.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:58.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:58.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:58.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:07:58.766][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:58.767][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:07:58.767][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:58.799][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:07:59.178][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:59.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:59.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:59.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:59.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:59.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:59.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:59.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:59.184][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.187][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.189][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.190][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:59.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:59.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:59.192][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.193][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.193][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.195][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.196][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.198][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.199][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.199][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.200][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.202][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:59.202][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.208][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:59.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:59.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:59.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:59.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:59.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:59.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:59.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.221][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.222][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:59.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:59.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:59.224][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.224][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.225][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.227][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.228][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.230][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.230][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.231][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.232][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.234][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.240][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:59.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:59.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:59.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:59.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:59.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:59.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:59.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:59.259][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.262][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.264][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.265][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:59.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:59.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:59.267][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.268][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.268][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.270][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.271][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.273][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.273][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.274][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.275][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.277][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:59.277][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.282][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:59.286][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:59.286][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:59.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:59.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:59.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:59.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:59.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:59.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:59.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:59.405][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:07:59.407][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:59.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:07:59.409][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:59.438][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:07:59.815][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:59.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:59.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:59.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:59.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:59.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:59.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:59.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:59.821][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.827][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.827][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:59.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:59.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:59.829][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.830][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.830][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.832][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.833][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.835][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.836][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.836][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.837][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.839][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:59.840][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.842][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.845][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.848][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:59.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:59.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:59.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:59.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:59.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:59.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:59.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.868][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.869][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:59.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:59.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:59.871][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.871][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.872][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.874][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.875][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.876][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.877][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.878][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.878][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.879][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.881][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:59.881][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.884][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.887][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:59.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:59.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:59.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:59.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:59.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:59.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:59.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:59.895][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.898][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.901][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.901][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:59.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:59.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:59.903][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.904][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.905][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.906][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.907][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.909][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.910][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:59.910][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.911][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.913][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:59.914][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:59.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.922][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:59.922][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:59.923][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:07:59.936][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:59.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:59.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.938][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:59.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:59.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.941][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:59.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:59.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:59.945][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:59.945][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-04-09 08:07:59.946][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:59.947][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:59.949][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:59.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.951][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:59.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:59.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.954][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:59.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:59.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:59.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:59.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:59.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:59.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:59.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:59.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:59.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:59.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:00.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:00.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:00.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:00.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:08:00.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:00.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:00.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:00.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:00.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:00.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:00.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:00.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:08:00.124][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:00.125][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:00.126][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:08:05.046][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:08:14.880][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:08:14.895][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content"
biodb.TRACE[2022-04-09 08:08:14.928][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.request"
biodb.DEBUG[2022-04-09 08:08:15.142][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:15.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:15.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:15.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:15.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:15.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:15.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:15.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.156][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.156][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:15.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:15.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:15.158][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.159][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.160][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.205][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.206][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.208][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.209][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.209][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.210][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.212][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:15.213][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.216][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:15.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:15.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:15.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:15.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:15.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:15.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:15.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:15.228][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.231][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.234][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.234][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:15.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:15.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:15.237][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.237][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.238][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.240][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.241][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.243][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.244][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.244][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.245][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.247][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.251][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.253][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:15.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:15.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:15.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:15.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:15.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:15.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:15.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:15.263][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.265][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.268][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.269][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:15.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:15.270][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:15.271][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.272][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.272][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.274][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.275][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.277][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.278][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:15.279][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.279][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.281][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:15.282][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.285][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.288][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:15.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:15.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:15.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:15.292][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:15.293][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:15.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:15.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:15.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:15.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:15.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:15.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:15.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:15.427][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:08:15.429][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:15.439][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:15.441][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:08:20.192][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:08:30.468][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:08:30.483][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content"
biodb.TRACE[2022-04-09 08:08:30.512][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.request"
biodb.DEBUG[2022-04-09 08:08:30.720][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:30.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:30.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:30.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:30.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:30.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:30.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:30.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:30.727][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.730][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.732][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.733][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:30.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:30.734][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:30.735][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.736][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.736][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.738][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.739][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.741][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.742][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.742][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.743][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.745][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.751][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:30.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:30.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:30.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:30.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:30.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:30.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:30.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.765][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.765][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:30.766][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:30.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:30.767][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.768][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.771][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.771][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.773][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.774][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.774][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.775][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.777][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:30.789][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.792][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:30.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:30.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:30.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:30.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:30.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:30.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:30.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.809][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.809][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:30.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:30.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:30.811][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.812][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.813][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.814][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.815][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.817][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.818][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.818][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.819][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.821][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:30.822][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.824][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.827][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:30.830][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:30.831][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:30.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:30.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:30.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:30.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:30.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:30.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:30.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:30.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:08:30.952][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:30.953][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:30.954][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:08:35.540][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:08:45.840][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:08:45.857][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content"
biodb.TRACE[2022-04-09 08:08:45.888][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.request"
biodb.DEBUG[2022-04-09 08:08:46.113][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:46.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:46.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:46.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:46.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:46.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:46.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:46.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.126][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.127][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:46.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:46.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:46.129][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.129][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.130][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.132][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.133][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.135][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.136][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.136][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.137][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.139][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:46.140][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.145][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:46.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:46.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:46.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:46.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:46.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:46.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:46.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.161][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.161][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:46.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:46.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:46.163][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.164][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.165][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.167][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.168][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.170][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.171][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.172][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.172][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.174][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:46.189][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.198][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:46.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:46.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:46.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:46.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:46.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:46.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:46.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:46.204][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.210][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.211][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:46.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:46.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:46.213][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.214][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.214][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.216][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.217][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.219][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.220][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.221][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.221][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.223][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.223][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.227][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:46.234][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:46.234][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:46.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:46.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:46.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:46.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:46.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:46.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:46.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:46.387][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:08:46.389][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:08:46.390][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:08:46.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:08:46.425][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:08:46.841][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:46.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:46.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:46.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:46.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:46.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:46.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:46.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.856][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.857][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:46.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:46.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:46.872][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.873][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.874][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.876][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.877][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.879][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.880][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.880][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.881][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.883][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:46.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:46.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:46.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:46.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:46.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:46.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:46.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.906][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.907][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:46.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:46.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:46.909][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.910][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.911][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.913][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.914][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.916][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.917][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.917][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.918][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.920][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:46.921][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.927][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:46.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:46.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:46.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:46.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:46.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:46.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:46.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:46.936][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.939][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.942][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.943][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:46.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:46.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:46.945][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.945][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.946][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.947][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.948][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.949][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.951][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.952][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:46.953][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.953][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.955][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.955][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:46.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:46.966][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:46.967][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:46.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:46.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:46.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:46.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:46.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:46.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:46.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:47.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:08:47.118][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:08:47.119][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:08:47.120][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:08:47.153][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:08:47.568][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:47.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:47.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:47.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:47.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:47.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:47.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:47.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.582][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.582][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:47.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:47.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:47.584][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.585][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.586][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.588][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.589][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.591][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.592][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.592][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.593][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.595][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:47.596][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.601][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:47.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:47.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:47.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:47.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:47.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:47.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:47.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.616][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.617][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:47.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:47.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:47.619][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.620][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.621][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.623][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.623][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.625][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.626][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.627][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.628][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.630][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.636][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:47.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:47.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:47.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:47.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:47.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:47.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:47.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:47.646][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.652][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.653][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:47.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:47.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:47.669][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.670][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.671][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.673][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.674][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.676][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.676][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:47.677][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.678][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.680][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:47.681][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:47.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:47.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:47.691][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:47.692][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:47.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:47.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:47.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:47.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:47.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:47.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:47.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:47.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:08:47.832][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:08:47.834][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:08:47.834][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:08:47.868][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:08:48.294][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:48.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:48.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:48.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:48.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:48.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:48.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:48.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:48.302][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.308][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.309][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:48.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:48.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:48.311][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.311][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.312][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.314][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.315][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.317][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.318][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.319][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.320][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.322][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:48.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:48.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:48.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:48.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:48.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:48.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:48.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:48.338][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.345][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.345][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:48.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:48.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:48.361][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.362][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.362][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.365][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.365][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.368][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.368][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.369][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.370][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.372][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.376][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.382][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:48.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:48.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:48.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:48.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:48.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:48.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:48.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:48.389][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.391][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.394][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.395][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:48.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:48.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:48.397][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.398][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.399][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.400][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.401][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.402][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.404][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.405][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:48.405][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.406][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.408][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:48.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:48.419][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:48.419][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:48.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:48.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:48.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:48.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:48.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:48.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:48.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:48.578][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:08:48.581][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:48.582][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:48.583][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:08:53.143][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:09:03.275][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:09:03.292][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content"
biodb.TRACE[2022-04-09 08:09:03.326][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.request"
biodb.DEBUG[2022-04-09 08:09:03.554][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:03.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:03.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:03.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:03.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:03.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:03.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:03.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:03.562][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.566][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.569][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.570][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:03.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:03.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:03.572][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.573][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.573][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.576][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.577][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.579][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.580][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.580][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.581][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.583][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:03.584][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.590][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:03.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:03.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:03.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:03.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:03.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:03.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:03.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.603][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.606][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.607][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:03.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:03.608][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:03.609][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.610][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.610][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.613][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.626][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.629][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.630][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.630][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.631][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.633][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.643][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:03.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:03.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:03.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:03.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:03.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:03.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:03.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:03.649][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.652][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.655][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.656][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:03.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:03.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:03.658][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.659][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.660][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.662][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.662][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.665][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.665][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:03.666][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.667][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.669][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:03.670][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.673][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.675][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:03.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:03.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:03.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:03.679][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:03.680][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:03.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:03.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:03.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:03.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:03.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:03.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:03.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:03.827][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:03.830][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:09:03.831][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:09:03.832][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:09:08.508][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:09:18.408][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:09:18.425][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content"
biodb.TRACE[2022-04-09 08:09:18.458][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.request"
biodb.DEBUG[2022-04-09 08:09:18.678][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:18.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:18.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:18.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:18.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:18.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:18.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:18.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:18.686][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.689][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.692][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.692][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:18.693][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:18.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:18.694][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.695][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.696][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.698][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.699][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.701][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.702][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.702][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.703][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.705][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:18.706][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.709][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.715][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:18.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:18.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:18.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:18.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:18.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:18.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:18.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.727][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.728][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:18.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:18.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:18.730][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.730][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.731][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.734][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.734][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.737][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.737][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.738][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.739][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.771][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:18.772][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.775][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.781][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:18.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:18.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:18.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:18.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:18.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:18.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:18.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:18.787][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.793][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.794][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:18.795][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:18.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:18.796][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.797][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.798][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.800][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.801][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.803][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.803][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:18.804][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.805][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.807][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.811][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.814][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:18.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:18.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:18.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:18.817][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:18.818][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:18.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:18.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:18.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:18.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:18.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:18.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:18.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:18.956][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:18.958][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:09:18.959][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:09:18.960][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:09:23.423][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:09:33.216][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:09:33.231][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content"
biodb.TRACE[2022-04-09 08:09:33.257][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.request"
biodb.DEBUG[2022-04-09 08:09:33.453][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:33.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:33.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:33.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:33.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:33.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:33.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:33.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:33.460][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.466][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.466][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:33.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:33.467][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:33.468][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.469][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.469][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.471][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.472][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.474][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.475][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.475][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.476][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.478][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:33.478][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.481][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:33.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:33.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:33.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:33.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:33.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:33.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:33.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.498][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.498][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:33.499][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:33.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:33.500][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.501][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.502][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.504][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.504][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.506][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.507][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.508][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.508][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.510][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.524][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:33.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:33.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:33.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:33.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:33.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:33.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:33.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.537][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.540][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.541][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:33.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:33.542][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:33.543][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.543][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.544][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.546][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.546][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.548][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.549][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:33.550][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.550][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.552][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:33.553][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:33.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:33.562][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:33.562][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:33.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:33.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:33.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:33.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:33.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:33.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:33.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:33.695][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:33.697][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:33.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "856708e2bbeea806179c75604ab7003a".
biodb.TRACE[2022-04-09 08:09:33.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:33.731][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content".
biodb.DEBUG[2022-04-09 08:09:34.104][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:34.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:34.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:34.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:34.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:34.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:34.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:34.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:34.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.116][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.117][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:34.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:34.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:34.127][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.128][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.129][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.131][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.131][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.133][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.134][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.135][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.135][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.137][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.141][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.143][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:34.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:34.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:34.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:34.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:34.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:34.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:34.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.155][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.158][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.158][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:34.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:34.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:34.160][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.161][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.161][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.163][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.164][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.166][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.167][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.167][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.168][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.170][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.179][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:34.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:34.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:34.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:34.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:34.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:34.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:34.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.190][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.190][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:34.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:34.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:34.192][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.193][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.194][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.195][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.196][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.198][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.199][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.199][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.200][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.202][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:34.212][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:34.212][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:34.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:34.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:34.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:34.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:34.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:34.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:34.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:34.343][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:34.345][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:34.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "213dc74fea82b4e00a3de9c6296d60ac".
biodb.TRACE[2022-04-09 08:09:34.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:34.376][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content".
biodb.DEBUG[2022-04-09 08:09:34.757][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:34.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:34.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:34.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:34.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:34.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:34.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:34.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.766][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.769][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.769][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:34.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:34.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:34.771][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.772][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.773][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.774][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.775][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.777][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.778][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.778][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.779][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.781][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.784][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.790][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:34.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:34.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:34.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:34.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:34.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:34.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:34.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:34.796][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.801][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.802][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:34.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:34.803][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:34.804][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.804][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.805][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.807][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.808][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.810][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.811][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.811][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.812][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.814][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:34.815][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:34.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:34.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:34.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:34.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:34.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:34.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:34.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:34.829][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.834][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.835][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:34.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:34.845][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:34.846][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.847][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.848][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.850][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.851][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.852][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.853][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.854][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:34.854][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.855][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.857][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:34.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:34.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:34.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:34.867][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:34.867][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:34.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:34.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:34.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:34.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:34.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:34.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:34.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:34.998][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:35.000][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:35.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "599a9d63e9d10326d614f066b3a2769e".
biodb.TRACE[2022-04-09 08:09:35.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:35.036][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content".
biodb.DEBUG[2022-04-09 08:09:35.426][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:35.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:35.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:35.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:35.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:35.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:35.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:35.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.440][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.440][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:35.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:35.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:35.442][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.443][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.444][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.446][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.447][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.449][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.450][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.450][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.451][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.453][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:35.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:35.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:35.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:35.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:35.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:35.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:35.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:35.470][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.473][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.476][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.477][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:35.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:35.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:35.492][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.493][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.494][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.496][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.497][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.499][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.500][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.500][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.501][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.503][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:35.504][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.506][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.509][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:35.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:35.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:35.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:35.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:35.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:35.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:35.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.523][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.523][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:35.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:35.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:35.525][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.526][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.527][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.529][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.529][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.531][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.532][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.533][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.533][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.535][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:35.536][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.541][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:35.544][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:35.545][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:35.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:35.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:35.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:35.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:35.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:35.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:35.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:35.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:35.681][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:35.682][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:09:35.683][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:35.715][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:09:36.098][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:36.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:36.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:36.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:36.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:36.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:36.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:36.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.110][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.111][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:36.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:36.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:36.113][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.113][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.114][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.116][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.117][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.119][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.119][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.120][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.121][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.122][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:36.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:36.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:36.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:36.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:36.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:36.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:36.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.142][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.143][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:36.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:36.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:36.145][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.145][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.146][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.148][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.149][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.150][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.151][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.151][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.152][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.153][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.155][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:36.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:36.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:36.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:36.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:36.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:36.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:36.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.174][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.175][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:36.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:36.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:36.177][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.178][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.178][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.180][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.181][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.183][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.184][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.184][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.185][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.187][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:36.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:36.206][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:36.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:36.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:36.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:36.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:36.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:36.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:36.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:36.327][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:36.329][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:36.329][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:09:36.330][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:36.361][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:09:36.734][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:36.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:36.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:36.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:36.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:36.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:36.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:36.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.744][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.746][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.747][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:36.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:36.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:36.749][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.750][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.750][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.752][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.753][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.755][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.755][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.756][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.757][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.759][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.762][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.768][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:36.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:36.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:36.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:36.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:36.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:36.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:36.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.779][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.779][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:36.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:36.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:36.781][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.782][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.782][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.784][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.785][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.787][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.788][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.788][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.789][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.791][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:36.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:36.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:36.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:36.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:36.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:36.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:36.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.823][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.824][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:36.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:36.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:36.825][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.826][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.827][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.829][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.829][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.831][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.832][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:36.833][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.833][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.835][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:36.836][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:36.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:36.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:36.844][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:36.845][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:36.845][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:36.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:36.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:36.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:36.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:36.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:36.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:36.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:36.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:36.967][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:36.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:09:36.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:36.999][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:09:37.377][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:37.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:37.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:37.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:37.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:37.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:37.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:37.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.390][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.390][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:37.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:37.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:37.392][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.393][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.394][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.396][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.396][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.398][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.399][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.400][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.400][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.402][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.406][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:37.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:37.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:37.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:37.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:37.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:37.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:37.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.429][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.431][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.432][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:37.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:37.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:37.434][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.435][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.435][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.437][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.438][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.440][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.440][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.441][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.442][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.444][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:37.444][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:37.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:37.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:37.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:37.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:37.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:37.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:37.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.463][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.464][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:37.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:37.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:37.466][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.466][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.467][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.469][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.470][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.474][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.475][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:37.476][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.477][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.479][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.483][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.487][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:37.490][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:37.491][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:37.492][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:37.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:37.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:37.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:37.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:37.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:37.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:37.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:37.651][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:37.653][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:37.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ec7b47285bd6f593d724b6f7745f0646".
biodb.TRACE[2022-04-09 08:09:37.655][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:37.689][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content".
biodb.DEBUG[2022-04-09 08:09:38.072][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:38.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:38.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:38.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:38.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:38.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:38.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:38.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:38.079][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.082][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.084][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.085][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:38.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:38.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:38.087][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.088][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.088][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.090][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.091][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.093][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.094][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.094][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.095][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.097][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:38.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:38.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:38.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:38.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:38.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:38.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:38.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.116][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.117][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:38.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:38.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:38.119][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.120][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.120][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.122][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.123][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.125][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.125][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.126][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.127][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.129][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:38.129][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.135][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:38.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:38.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:38.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:38.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:38.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:38.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:38.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:38.143][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.158][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.159][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:38.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:38.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:38.161][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.162][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.162][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.164][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.165][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.167][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.168][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.168][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.169][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.171][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:38.180][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:38.181][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:38.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:38.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:38.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:38.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:38.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:38.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:38.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:38.302][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:38.304][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:38.305][cch$loadFileContent] Trying to load 1 files from cache: [1]: "236b5f2d20f6da60d3d5e29141c3c6fd".
biodb.TRACE[2022-04-09 08:09:38.306][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:38.336][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content".
biodb.DEBUG[2022-04-09 08:09:38.716][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:38.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:38.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:38.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:38.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:38.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:38.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:38.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.728][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.729][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:38.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:38.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:38.731][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.731][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.732][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.734][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.735][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.737][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.737][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.738][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.739][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.741][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:38.741][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.744][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.747][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:38.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:38.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:38.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:38.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:38.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:38.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:38.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.768][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.770][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.771][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:38.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:38.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:38.773][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.774][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.774][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.776][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.777][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.779][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.780][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.780][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.781][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.783][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:38.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:38.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:38.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:38.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:38.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:38.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:38.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.803][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.804][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:38.805][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:38.805][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:38.806][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.806][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.807][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.809][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.810][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.812][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.812][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:38.813][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.814][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.816][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:38.816][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.822][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:38.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:38.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:38.825][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:38.826][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:38.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:38.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:38.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:38.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:38.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:38.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:38.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:38.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:38.952][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:38.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c0ec3345a6e512e30aa3c52ef1c02f40".
biodb.TRACE[2022-04-09 08:09:38.953][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:38.984][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content".
biodb.DEBUG[2022-04-09 08:09:39.363][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:39.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:39.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:39.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:39.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:39.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:39.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:39.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.385][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.386][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:39.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:39.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:39.388][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.388][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.389][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.391][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.392][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.394][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.394][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.395][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.396][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.398][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:39.398][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:39.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:39.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:39.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:39.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:39.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:39.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:39.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:39.412][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.418][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.418][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:39.419][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:39.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:39.420][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.421][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.422][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.423][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.424][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.426][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.427][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.427][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.428][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.430][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:39.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:39.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:39.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:39.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:39.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:39.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:39.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.449][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.450][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:39.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:39.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:39.452][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.453][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.453][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.455][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.456][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.458][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.458][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:39.459][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.460][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.462][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.471][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:39.471][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:39.472][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:09:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.498][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:09:39.501][biodb::testThat] 
biodb.INFO [2022-04-09 08:09:39.502][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-04-09 08:09:39.503][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:09:39.503][biodb::testThat] 
biodb.TRACE[2022-04-09 08:09:39.505][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:09:39.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:09:39.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.508][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:09:39.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:09:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:09:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:09:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:09:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:09:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:09:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:09:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:09:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:09:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:09:39.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:39.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:39.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:39.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:39.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:39.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:39.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:39.675][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:39.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:39.686][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:09:39.687][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:39.718][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:09:40.098][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:40.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:40.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:40.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:40.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:40.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:40.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:40.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.141][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.142][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:40.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:40.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:40.144][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.145][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.147][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.148][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.150][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.152][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.153][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.157][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.163][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.165][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.166][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.168][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.170][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.171][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.176][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.178][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.179][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.181][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.182][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.182][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.185][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.186][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.188][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.200][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.201][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.206][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.211][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:40.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.238][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:09:40.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:40.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:40.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:40.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:40.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:40.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:40.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.296][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.323][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.323][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:40.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:40.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:40.325][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.326][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.328][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.329][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.329][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.331][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.334][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.334][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.339][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.342][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.344][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.345][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.346][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.347][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.347][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.349][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.352][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.353][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.354][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.357][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.362][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.363][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.363][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.366][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.367][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.369][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.371][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.372][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.374][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.376][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.382][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:09:40.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:40.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:40.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:40.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:40.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:40.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:40.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:40.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.474][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.492][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.493][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:40.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:40.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:40.495][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.495][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.498][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.499][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.501][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.511][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.512][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.514][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.517][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.522][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.525][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.525][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.527][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.527][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.530][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.531][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.535][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.540][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.541][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:40.542][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.544][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.545][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.547][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.550][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.550][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.555][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.560][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:40.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:40.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:40.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:40.628][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:09:40.628][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:40.629][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:40.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:40.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:40.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:40.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:40.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:40.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:40.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:40.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:40.751][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:40.752][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:09:40.753][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:40.783][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:09:41.161][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:41.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:41.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:41.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:41.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:41.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:41.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:41.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.205][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.205][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:41.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:41.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:41.207][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.217][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.220][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.221][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.223][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.226][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.226][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.231][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.236][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.239][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.239][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.241][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.244][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.244][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.249][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.254][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.255][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.255][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.258][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.259][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.261][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.261][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.263][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.264][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.268][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.274][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:09:41.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:41.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:41.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:41.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:41.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:41.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:41.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:41.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.365][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.383][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.384][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:41.384][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:41.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:41.386][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.386][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.392][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.394][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.395][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.398][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.399][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.401][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.405][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.408][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.408][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.410][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.421][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.422][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.424][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.427][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.428][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.432][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.432][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.433][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.434][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.436][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.436][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.437][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.439][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.441][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.442][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.444][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.447][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.449][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.450][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.452][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:41.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.476][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:09:41.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:41.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:41.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:41.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:41.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:41.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:41.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.561][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.562][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:41.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:41.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:41.563][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.564][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.567][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.569][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.572][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.573][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.577][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.583][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.585][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.586][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.588][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.590][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.591][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.595][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.596][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.601][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.601][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:41.602][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.605][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.605][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.610][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.611][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.615][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.627][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.629][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:41.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.654][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:41.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:41.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:41.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:09:41.688][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:41.689][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:41.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:41.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:41.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:41.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:41.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:41.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:41.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:41.810][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:41.820][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:41.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:09:41.822][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:41.852][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:09:42.229][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:42.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:42.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:42.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:42.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:42.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:42.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:42.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.273][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.274][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:42.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:42.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:42.276][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.277][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.279][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.280][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.282][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.285][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.285][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.290][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.295][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.298][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.298][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.299][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.300][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.303][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.303][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.308][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.311][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.313][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.314][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.315][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.317][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.318][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.320][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.333][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.333][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.338][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.340][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.341][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.343][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:42.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.368][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.373][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:09:42.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:42.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:42.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:42.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:42.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:42.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:42.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.435][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.453][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.454][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:42.454][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:42.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:42.456][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.456][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.459][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.460][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.462][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.464][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.465][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.469][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.474][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.475][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.477][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.478][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.480][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.482][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.483][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.487][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.493][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.493][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.494][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.496][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.497][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.499][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.502][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.502][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.504][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.507][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.510][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.512][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:42.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.546][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:09:42.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:42.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:42.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:42.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:42.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:42.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:42.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.602][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.624][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.624][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:42.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:42.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:42.626][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.627][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.802][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.802][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.804][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.807][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.807][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.812][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.817][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.820][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.820][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.822][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.822][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.825][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.825][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.830][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.835][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.836][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:42.836][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.839][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.840][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.842][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.844][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.845][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.849][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.854][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:42.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.881][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:42.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:42.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:42.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:09:42.917][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:42.918][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:42.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:42.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:42.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:42.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:42.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:42.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:42.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:43.034][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:43.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:43.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:09:43.037][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:43.067][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:09:43.444][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:43.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:43.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:43.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:43.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:43.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:43.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:43.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.461][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.471][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.494][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:43.495][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:43.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:43.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:43.497][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:43.498][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.500][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.501][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.503][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.505][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.506][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.508][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.511][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.516][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.516][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.518][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.521][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.522][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.524][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.526][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.527][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.543][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.546][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.551][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.552][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.554][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:43.554][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:43.555][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.557][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.558][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.560][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.562][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.563][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.568][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.573][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.597][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.600][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:09:43.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:43.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:43.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:43.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:43.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:43.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:43.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.658][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.661][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.684][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:43.685][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:43.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:43.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:43.687][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:43.688][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.689][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.690][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.691][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.693][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.695][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.696][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.701][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.706][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.706][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.708][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.709][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.710][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.711][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.711][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.713][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.713][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.716][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.717][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.721][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.723][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.726][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.727][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.729][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:43.729][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:43.730][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.733][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.733][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.735][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.735][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.738][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.739][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.743][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.746][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.754][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.778][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.783][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:09:43.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:43.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:43.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:43.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:43.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:43.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:43.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:43.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.833][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.835][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.864][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:43.865][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:43.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:43.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:43.867][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:43.867][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.870][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.871][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.873][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.875][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.876][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.880][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.883][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.884][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.885][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.886][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.888][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.891][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.891][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.892][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.893][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.896][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.896][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.901][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.906][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.906][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:43.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.908][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:43.909][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:43.910][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.912][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.913][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.915][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.917][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.918][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.921][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.922][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.926][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.927][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:43.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:43.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:43.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:43.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:43.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.952][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.955][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:43.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:43.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:43.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:43.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:43.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:09:43.992][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:43.993][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:43.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:43.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:43.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:43.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:43.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:43.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:43.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:44.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:44.111][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:44.112][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:09:44.113][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:44.143][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:09:44.521][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:44.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:44.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:44.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:44.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:44.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:44.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:44.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.544][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.546][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.575][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.580][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:44.581][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:44.582][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:44.582][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:44.583][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:44.584][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.586][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.587][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.588][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.589][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.591][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.592][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.594][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.597][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.602][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.602][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.604][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.607][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.608][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.609][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.612][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.613][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.617][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.622][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.623][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.625][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:44.625][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:44.626][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.629][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.629][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.631][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.634][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.634][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.639][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.640][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.644][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.676][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.678][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.681][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.710][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:09:44.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:44.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:44.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:44.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:44.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:44.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:44.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.733][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.757][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:44.757][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:44.758][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:44.759][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:44.759][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:44.760][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.762][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.763][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.764][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.765][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.775][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.780][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.782][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.785][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.786][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.788][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.790][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.790][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.791][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.793][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.795][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.796][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.801][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.804][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.806][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.806][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.808][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:44.809][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:44.810][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.812][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.813][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.815][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.817][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.817][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.818][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.822][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.822][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.825][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.826][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.828][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:09:44.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:44.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:44.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:44.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:44.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:44.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:44.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.940][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:44.940][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:44.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:44.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:44.942][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:44.943][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.945][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.946][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.947][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.948][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.951][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.951][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.955][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.956][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.961][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.962][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.964][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.966][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.967][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.969][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.972][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.979][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:44.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:44.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.983][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:44.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:44.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:44.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.988][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.989][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:44.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.991][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:44.992][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:44.992][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:44.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:44.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.995][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.996][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:44.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:44.997][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:44.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:44.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:44.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.000][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.001][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.005][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.008][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.010][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.037][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.040][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:09:45.069][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:45.070][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:45.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:45.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:45.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:45.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:45.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:45.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:45.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:45.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:45.197][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:45.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:09:45.198][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:45.228][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:09:45.606][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:45.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:45.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:45.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:45.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:45.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:45.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:45.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:45.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.629][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.631][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.655][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:45.655][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:45.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:45.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:45.657][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:45.658][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.661][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.663][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.663][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.666][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.667][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.671][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.685][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.686][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.688][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.690][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.691][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.693][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.696][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.696][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.701][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.706][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.707][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.709][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:45.709][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:45.710][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.712][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.713][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.715][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.718][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.718][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.723][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.728][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.757][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.793][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:09:45.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:45.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:45.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:45.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:45.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:45.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:45.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:45.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.840][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:45.841][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:45.841][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:45.842][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:45.843][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:45.843][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.846][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.848][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.851][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.852][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.855][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.856][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.859][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.861][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.862][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.864][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.866][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.867][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.869][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.872][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.872][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.876][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.884][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.889][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.890][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:45.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.892][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:45.892][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:45.893][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.894][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.896][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.896][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.898][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.901][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.901][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.906][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.911][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:45.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.938][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:09:45.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:45.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:45.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:45.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:45.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:45.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:45.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:45.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.001][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.025][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:46.025][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:46.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:46.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:46.027][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:09:46.028][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:46.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:46.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.031][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.033][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:46.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:46.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.035][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.036][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.040][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:46.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:46.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.046][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:46.046][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:46.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.048][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:46.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:46.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.051][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.051][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.053][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:46.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:46.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.056][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.057][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.061][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:46.062][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:46.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.066][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:09:46.067][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:09:46.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.069][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:46.069][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:09:46.070][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:46.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:46.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.072][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.073][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.073][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.075][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:46.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:46.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.085][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.086][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.090][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:46.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:46.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.093][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.095][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:09:46.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:09:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:09:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:09:46.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:46.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:46.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:09:46.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:09:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.122][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.125][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:09:46.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:46.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:09:46.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:09:46.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:09:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:09:46.154][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:46.154][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:09:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:46.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:09:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:09:46.166][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-09 08:09:46.166][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2022-04-09 08:09:46.167][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2022-04-09 08:09:46.168][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-09 08:09:46.168][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:46.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:46.169][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:46.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:46.171][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:46.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 371 ]
> 
> proc.time()
   user  system elapsed 
 36.597   2.471 197.622

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbLipidmaps/DESCRIPTION’ ... OK
* this is package ‘biodbLipidmaps’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbLipidmaps’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbLipidmaps.Rcheck/00install.out

* installing *source* package ‘biodbLipidmaps’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbLipidmaps)