Back to Long Tests report for BioC 3.14

This page was generated on 2022-04-09 21:00:03 -0400 (Sat, 09 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4322
riesling1Windows Server 2019 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4108
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4135
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbLipidmaps on machv2


To the developers/maintainers of the biodbLipidmaps package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 8/19HostnameOS / ArchCHECK
biodbLipidmaps 1.0.1  (landing page)
Pierrick Roger
Snapshot Date: 2022-04-09 06:55:01 -0400 (Sat, 09 Apr 2022)
git_url: https://git.bioconductor.org/packages/biodbLipidmaps
git_branch: RELEASE_3_14
git_last_commit: bda9e29
git_last_commit_date: 2021-10-27 16:13:11 -0400 (Wed, 27 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK  
riesling1Windows Server 2019 Standard / x64  OK  
machv2macOS 10.14.6 Mojave / x86_64  OK  

Summary

Package: biodbLipidmaps
Version: 1.0.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.0.1.tar.gz
StartedAt: 2022-04-09 08:06:50 -0400 (Sat, 09 Apr 2022)
EndedAt: 2022-04-09 08:10:22 -0400 (Sat, 09 Apr 2022)
EllapsedTime: 212.5 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbLipidmaps.Rcheck
Warnings: 0

Tests output

biodbLipidmaps.Rcheck/tests/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbLipidmaps)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbLipidmaps")
biodb.INFO [2022-04-09 08:07:30.658][biodb::testContext] 
biodb.INFO [2022-04-09 08:07:30.670][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:07:30.671][biodb::testContext] Test context - Generic long tests
biodb.INFO [2022-04-09 08:07:30.672][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:07:30.673][biodb::testContext] 
biodb.INFO [2022-04-09 08:07:30.701][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-09 08:07:30.703][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-09 08:07:30.713][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:07:30.715][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-09 08:07:30.716][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-09 08:07:30.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.721][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-09 08:07:30.748][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-09 08:07:30.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.753][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-09 08:07:30.755][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-09 08:07:30.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.760][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-09 08:07:30.761][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-09 08:07:30.762][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-09 08:07:30.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.767][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-09 08:07:30.768][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-09 08:07:30.770][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-09 08:07:30.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.774][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-09 08:07:30.776][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-09 08:07:30.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.781][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-09 08:07:30.782][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-09 08:07:30.783][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-09 08:07:30.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.788][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-09 08:07:30.789][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-09 08:07:30.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.794][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-09 08:07:30.795][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-09 08:07:30.797][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-09 08:07:30.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.802][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:07:30.803][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-09 08:07:30.804][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-09 08:07:30.806][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-09 08:07:30.807][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-09 08:07:30.808][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-09 08:07:30.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.813][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-09 08:07:30.814][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-09 08:07:30.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.819][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-09 08:07:30.821][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-09 08:07:30.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.825][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-09 08:07:30.827][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-09 08:07:30.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.831][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-09 08:07:30.833][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-09 08:07:30.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.838][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-09 08:07:30.839][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-09 08:07:30.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.844][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:07:30.845][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-09 08:07:30.853][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-09 08:07:30.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.857][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-09 08:07:30.859][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-09 08:07:30.860][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-09 08:07:30.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:30.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:30.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:30.869][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-09 08:07:30.917][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:30.940][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-09 08:07:30.941][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:30.943][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:07:30.944][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:30.945][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:07:30.947][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:30.948][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:07:30.949][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:07:30.950][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:07:30.952][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:30.953][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-09 08:07:30.954][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:07:30.956][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:30.963][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:30.964][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:07:30.964][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:07:30.964][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:07:30.964][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:07:30.964][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:07:30.965][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:07:30.966][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:30.967][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:30.968][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:07:30.969][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:30.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:30.971][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:07:30.973][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:30.974][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:07:30.975][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:07:30.976][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:30.977][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:30.978][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-09 08:07:30.980][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:30.981][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:07:30.982][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:30.983][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:07:30.984][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:30.985][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:07:30.986][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:30.987][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:07:30.989][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:07:30.990][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:07:30.991][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:30.992][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-09 08:07:30.993][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:07:30.994][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:30.995][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:30.996][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:07:30.996][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:07:30.996][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:07:30.996][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:07:30.996][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:07:30.997][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:07:30.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:30.999][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:31.000][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:07:31.001][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:31.002][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:31.003][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.005][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.006][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:07:31.007][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:07:31.008][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.009][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.010][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-09 08:07:31.012][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.013][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-09 08:07:31.014][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.015][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:07:31.016][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.018][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.019][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.020][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.021][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:07:31.022][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:07:31.023][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.024][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-09 08:07:31.025][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:07:31.026][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.027][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.029][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.030][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:07:31.031][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:31.032][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:31.033][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:07:31.034][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:31.035][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:31.036][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.037][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.038][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:07:31.039][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:07:31.040][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.041][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.042][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-09 08:07:31.044][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.045][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:07:31.047][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.048][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:07:31.049][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.050][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.051][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.052][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.053][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:07:31.054][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:07:31.055][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.056][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-09 08:07:31.058][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:07:31.059][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.060][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.061][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.062][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:07:31.063][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:31.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:31.065][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:07:31.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:31.067][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:31.068][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.069][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.070][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:07:31.071][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:07:31.072][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.073][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.078][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:07:31.079][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.164][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-09 08:07:31.170][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-09 08:07:31.171][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-09 08:07:31.173][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-09 08:07:31.175][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:07:31.176][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-09 08:07:31.178][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-09 08:07:31.179][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-09 08:07:31.181][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-09 08:07:31.182][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-09 08:07:31.184][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:07:31.186][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-09 08:07:31.187][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-09 08:07:31.189][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-09 08:07:31.190][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-09 08:07:31.192][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-09 08:07:31.193][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-09 08:07:31.195][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-09 08:07:31.196][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:07:31.198][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-09 08:07:31.199][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-09 08:07:31.201][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-09 08:07:31.203][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-09 08:07:31.204][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-09 08:07:31.206][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-09 08:07:31.207][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-09 08:07:31.209][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-09 08:07:31.210][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-09 08:07:31.212][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-09 08:07:31.214][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-09 08:07:31.215][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-09 08:07:31.217][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-09 08:07:31.218][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-09 08:07:31.220][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-09 08:07:31.221][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-09 08:07:31.223][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-09 08:07:31.224][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-09 08:07:31.226][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-09 08:07:31.228][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-09 08:07:31.229][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-09 08:07:31.231][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-09 08:07:31.232][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-09 08:07:31.234][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-09 08:07:31.236][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-09 08:07:31.237][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-09 08:07:31.239][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-09 08:07:31.241][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-09 08:07:31.243][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-09 08:07:31.249][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-09 08:07:31.251][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-09 08:07:31.252][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-09 08:07:31.254][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-09 08:07:31.255][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-09 08:07:31.257][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-09 08:07:31.258][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-09 08:07:31.260][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-09 08:07:31.261][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-09 08:07:31.263][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-09 08:07:31.264][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-09 08:07:31.266][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-09 08:07:31.267][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-09 08:07:31.269][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-09 08:07:31.270][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-09 08:07:31.272][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-09 08:07:31.273][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-09 08:07:31.275][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-09 08:07:31.276][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:07:31.278][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:07:31.279][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-09 08:07:31.281][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-09 08:07:31.282][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-09 08:07:31.284][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-09 08:07:31.285][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-09 08:07:31.287][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-09 08:07:31.288][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-09 08:07:31.290][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-09 08:07:31.291][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-09 08:07:31.293][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-09 08:07:31.295][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-09 08:07:31.296][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-09 08:07:31.298][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-09 08:07:31.299][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-09 08:07:31.301][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-09 08:07:31.308][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-09 08:07:31.309][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-09 08:07:31.313][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:07:31.314][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.316][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:07:31.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:31.439][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2022-04-09 08:07:31.450][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2022-04-09 08:07:31.452][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.453][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.454][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.455][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:07:31.457][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.458][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.459][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.460][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.461][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:07:31.462][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:07:31.463][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.464][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2022-04-09 08:07:31.465][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2022-04-09 08:07:31.466][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2022-04-09 08:07:31.468][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-09 08:07:31.469][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:07:31.469][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:07:31.470][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:07:31.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:31.472][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:31.473][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:07:31.474][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:07:31.475][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:07:31.476][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:07:31.477][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-04-09 08:07:31.477][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2022-04-09 08:07:31.478][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:07:31.479][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:07:31.480][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-09 08:07:31.482][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:07:31.488][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2022-04-09 08:07:31.490][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-09 08:07:31.517][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2022-04-09 08:07:31.518][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2022-04-09 08:07:31.524][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2022-04-09 08:07:31.529][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2022-04-09 08:07:31.534][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-04-09 08:07:31.542][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-04-09 08:07:31.543][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2022-04-09 08:07:31.545][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2022-04-09 08:07:31.586][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:31.587][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-04-09 08:07:31.588][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:31.589][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:31.593][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000001-content.tsv".
biodb.DEBUG[2022-04-09 08:07:31.605][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:31.609][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:07:31.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:31.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:31.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:31.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:31.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:31.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:31.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:31.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:31.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:31.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:31.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:31.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.762][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:31.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:31.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:31.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:31.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:31.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:07:31.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.839][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:31.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:31.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:31.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.946][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:31.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:31.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:31.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:31.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:31.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:32.001][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000001.
biodb.TRACE[2022-04-09 08:07:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:32.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:32.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:32.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.152][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.182][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.213][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.242][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.339][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.348][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.349][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.357][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.375][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.408][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000002-content.tsv".
biodb.DEBUG[2022-04-09 08:07:32.461][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:32.462][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:07:32.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:32.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:32.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:32.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:32.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:32.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:32.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:32.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.627][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.632][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:07:32.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.646][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:32.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.673][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:32.714][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000002.
biodb.TRACE[2022-04-09 08:07:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:32.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:32.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:32.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:32.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.864][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:32.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.894][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.924][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.925][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.928][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:32.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.954][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:32.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:32.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:32.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.064][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.082][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.083][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.090][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.108][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA08040013-content.tsv".
biodb.DEBUG[2022-04-09 08:07:33.138][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:33.140][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:07:33.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:33.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:33.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:33.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:33.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:33.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:33.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:33.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.196][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.268][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:33.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.272][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:33.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.328][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:33.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:07:33.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:33.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.391][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.396][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:33.445][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA08040013.
biodb.TRACE[2022-04-09 08:07:33.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:33.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.485][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.522][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.527][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:33.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.559][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.588][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.618][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.620][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.648][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.674][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.737][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.738][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.741][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.815][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.833][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.834][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:33.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.842][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:33.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:33.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.851][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.853][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.855][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.860][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:33.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:33.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.879][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:33.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:33.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:33.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.891][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:33.898][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:33.899][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-04-09 08:07:33.900][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:33.901][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:07:33.904][private$loadEntries] Creating entries from ids [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.DEBUG[2022-04-09 08:07:33.913][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-09 08:07:33.916][cch$loadFileContent] Trying to load 3 files from cache: [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.TRACE[2022-04-09 08:07:33.918][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-04-09 08:07:33.921][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA08040013.tsv".
biodb.DEBUG[2022-04-09 08:07:33.922][conn$getEntryContent] 3 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:33.956][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 3 content(s).
biodb.DEBUG[2022-04-09 08:07:33.957][self$createEntryFromContent] Parsing 3 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:07:33.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:33.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:33.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:33.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:33.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:33.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:33.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:33.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:33.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.104][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:34.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:07:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.122][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.261][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:34.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.312][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:34.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.316][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:34.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.368][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:34.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:07:34.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.401][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.405][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:34.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:34.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:34.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:34.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:34.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:34.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:34.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:34.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:34.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.561][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:34.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:34.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:34.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:34.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.628][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:34.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:34.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:34.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.682][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:34.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:07:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:34.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:34.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:34.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.900][self$createEntryFromContent] Accession numbers: LMFA00000001, LMFA00000002, LMFA08040013.
biodb.TRACE[2022-04-09 08:07:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:07:34.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:07:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:07:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:07:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:07:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:07:34.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:07:34.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:07:34.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:07:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:07:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:07:34.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:07:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:07:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:07:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:07:34.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:07:34.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:34.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:07:34.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:07:34.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:34.956][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:34.957][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-04-09 08:07:34.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:34.959][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:34.962][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:34.965][ef$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:34.967][function(conn, opt)] Testing searchForEntries() with entry "LMFA00000001" and field "name".
biodb.TRACE[2022-04-09 08:07:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:34.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:34.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:35.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:35.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:35.012][function(conn, opt)] With value "2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:07:35.086][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:07:35.106][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:35.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:35.113][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride".
biodb.TRACE[2022-04-09 08:07:36.024][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride).
biodb.DEBUG[2022-04-09 08:07:36.813][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:36.836][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content"
biodb.TRACE[2022-04-09 08:07:36.883][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.request"
biodb.DEBUG[2022-04-09 08:07:36.895][function(conn, opt)] With found IDs [1]: "LMFA00000001".
biodb.TRACE[2022-04-09 08:07:36.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:36.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.913][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:36.915][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:36.916][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-04-09 08:07:36.917][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:36.919][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:36.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:36.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:37.101][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:07:37.105][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:37.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-04-09 08:07:37.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:37.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.INFO [2022-04-09 08:07:37.144][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:37.146][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-04-09 08:07:37.147][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:37.148][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:37.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:37.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:37.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:07:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:07:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:37.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:07:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:37.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:07:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:37.272][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:37.273][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-04-09 08:07:37.274][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:37.275][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:37.281][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:37.282][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-04-09 08:07:37.284][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:37.285][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:37.290][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:37.291][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-04-09 08:07:37.292][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:37.293][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:07:37.297][function(conn, opt)] Trying to download "https://www.lipidmaps.org/data?LMID=LMFA00000001".
biodb.DEBUG[2022-04-09 08:07:38.147][getUrlContent] Use RCurl for downloading content of URL https://www.lipidmaps.org/data?LMID=LMFA00000001.
biodb.INFO [2022-04-09 08:07:38.650][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:38.651][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-04-09 08:07:38.652][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:38.653][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:38.658][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:38.659][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-04-09 08:07:38.660][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:38.661][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:38.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:38.847][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:07:38.850][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:38.852][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-04-09 08:07:38.853][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:38.855][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2022-04-09 08:07:38.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-04-09 08:07:38.896][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:38.897][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-04-09 08:07:38.899][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:38.900][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.TRACE[2022-04-09 08:07:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:38.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:38.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:38.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:38.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:38.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:39.016][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-04-09 08:07:39.034][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:39.035][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:39.058][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-04-09 08:07:43.706][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-04-09 08:07:49.879][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:49.889][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.content"
biodb.TRACE[2022-04-09 08:07:49.954][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.request"
biodb.DEBUG[2022-04-09 08:07:50.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-04-09 08:07:50.396][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:50.397][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:50.398][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-04-09 08:07:51.065][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-04-09 08:07:51.803][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:07:51.813][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.content"
biodb.TRACE[2022-04-09 08:07:51.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.request"
biodb.DEBUG[2022-04-09 08:07:51.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.DEBUG[2022-04-09 08:07:51.909][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:51.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "fd41c675dd237f33cdaafcbb15058c54".
biodb.TRACE[2022-04-09 08:07:51.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:51.914][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.content".
biodb.TRACE[2022-04-09 08:07:51.934][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:51.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:07:51.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:51.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:07:51.944][biodb::testThat] 
biodb.INFO [2022-04-09 08:07:51.945][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-04-09 08:07:51.947][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:07:51.948][biodb::testThat] 
biodb.TRACE[2022-04-09 08:07:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:07:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:07:51.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:51.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:51.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:51.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:51.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:51.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:51.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:51.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:51.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:51.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:07:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:51.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:51.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:51.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:52.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:52.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:52.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:52.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:52.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:52.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:52.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:52.259][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:07:52.262][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:07:52.264][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:07:52.265][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:52.306][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:07:53.114][private$loadEntries] Creating entries from ids [1]: "LMFA00000003".
biodb.DEBUG[2022-04-09 08:07:53.167][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:07:53.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "LMFA00000003".
biodb.TRACE[2022-04-09 08:07:53.170][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:07:53.172][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000003.tsv".
biodb.DEBUG[2022-04-09 08:07:53.174][conn$getEntryContent] 1 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:07:53.220][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:07:53.222][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-04-09 08:07:53.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:53.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:53.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:53.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:53.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:53.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:53.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:07:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:07:53.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:53.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-04-09 08:07:53.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.261][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:07:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:53.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:53.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:53.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:07:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:07:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.302][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:53.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-04-09 08:07:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:07:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:07:53.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:07:53.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:53.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.358][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:53.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-04-09 08:07:53.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:07:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:53.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-04-09 08:07:53.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:07:53.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.405][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.414][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:07:53.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:07:53.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:07:53.454][self$createEntryFromContent] Accession numbers: LMFA00000003.
biodb.DEBUG[2022-04-09 08:07:53.464][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:07:53.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:53.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:53.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:53.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:53.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:53.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:53.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.478][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.483][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.484][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:53.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:53.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:53.487][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.488][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.489][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.492][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.493][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.497][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.498][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.499][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.500][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.503][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:53.504][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.509][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.513][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:07:53.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:53.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:53.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:53.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:53.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:53.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:53.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:53.537][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.546][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.547][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:53.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:53.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:53.560][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.561][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.562][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.565][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.567][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.570][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.571][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.572][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.573][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.576][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:53.577][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:07:53.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:53.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:53.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:53.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:53.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:53.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:53.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:07:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.609][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.610][private$selectFields] 
biodb.TRACE[2022-04-09 08:07:53.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:07:53.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:07:53.613][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.614][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.615][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.618][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.620][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.623][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.624][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:07:53.625][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.626][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.629][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:07:53.630][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.639][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:07:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:07:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:07:53.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:07:53.645][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:07:53.646][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:07:53.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:07:53.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:07:53.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:07:53.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:07:53.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:07:53.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:07:53.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:07:53.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:07:53.856][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:07:53.857][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:07:53.859][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.TRACE[2022-04-09 08:07:58.683][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01).
biodb.DEBUG[2022-04-09 08:08:04.904][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:08:04.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content"
biodb.TRACE[2022-04-09 08:08:05.007][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.request"
biodb.DEBUG[2022-04-09 08:08:05.406][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:05.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:05.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:05.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:05.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:05.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:05.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:05.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:05.457][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.462][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.491][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.492][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:05.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:05.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:05.495][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.496][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.498][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.501][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.502][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.505][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.519][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.520][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.522][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.537][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.543][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.547][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:05.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:05.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:05.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:05.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:05.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:05.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:05.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:05.561][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.566][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.570][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.571][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:05.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:05.574][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:05.575][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.576][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.577][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.580][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.581][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.585][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.586][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.587][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.588][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.591][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.601][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:05.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:05.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:05.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:05.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:05.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:05.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:05.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.620][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.624][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.625][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:05.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:05.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:05.628][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.629][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.631][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.634][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.635][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.638][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.639][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:05.641][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.642][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.645][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:05.646][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:05.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:05.661][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:05.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:05.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:05.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:05.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:05.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:05.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:05.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:05.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:05.871][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:08:05.874][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:05.875][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:05.877][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.TRACE[2022-04-09 08:08:10.481][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01).
biodb.DEBUG[2022-04-09 08:08:16.545][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:08:16.567][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content"
biodb.TRACE[2022-04-09 08:08:16.652][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.request"
biodb.DEBUG[2022-04-09 08:08:17.007][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:17.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:17.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:17.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:17.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:17.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:17.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:17.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:17.017][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.022][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.026][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.027][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:17.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:17.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:17.030][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.031][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.032][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.036][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.037][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.040][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.041][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.042][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.043][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.046][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:17.048][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.052][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:17.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:17.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:17.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:17.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:17.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:17.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:17.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.075][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.079][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.080][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:17.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:17.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:17.083][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.084][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.085][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.089][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.090][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.093][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.094][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.095][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.096][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.099][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:17.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:17.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:17.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:17.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:17.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:17.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:17.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.127][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.132][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.133][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:17.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:17.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:17.136][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.137][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.138][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.141][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.143][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.146][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.147][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:17.148][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.149][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.152][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:17.153][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.158][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.162][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:17.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:17.168][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:17.169][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:08:17.191][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:17.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:17.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.200][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:17.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:08:17.205][biodb::testThat] 
biodb.INFO [2022-04-09 08:08:17.206][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-04-09 08:08:17.207][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:08:17.208][biodb::testThat] 
biodb.TRACE[2022-04-09 08:08:17.211][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:17.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:17.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.216][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:17.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:17.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.220][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:17.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:17.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:17.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:17.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:17.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:17.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:17.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:17.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:08:17.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:17.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:17.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:17.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:17.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:17.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:17.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:17.728][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.DEBUG[2022-04-09 08:08:17.731][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:08:17.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5652f5994fce967a05a065a71bac3ed6".
biodb.TRACE[2022-04-09 08:08:17.734][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:08:17.772][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.content".
biodb.DEBUG[2022-04-09 08:08:18.580][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:18.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:18.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:18.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:18.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:18.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:18.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:18.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.594][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.598][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.599][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:18.600][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:18.601][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:18.602][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.603][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.604][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.607][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.608][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.611][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.612][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.613][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.615][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.617][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:18.619][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.627][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:18.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:18.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:18.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:18.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:18.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:18.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:18.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:18.640][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.648][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.649][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:18.650][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:18.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:18.652][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.653][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.654][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.657][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.659][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.662][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.663][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.664][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.665][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.668][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:18.669][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.673][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.677][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:18.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:18.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:18.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:18.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:18.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:18.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:18.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.699][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.700][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:18.701][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:18.702][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:18.703][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.704][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.705][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.708][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.709][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.712][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.713][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:18.714][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.715][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.718][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:18.719][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.728][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:18.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:18.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:18.733][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:18.734][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:18.746][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:18.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:18.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:18.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:18.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:18.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:18.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:18.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:18.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.DEBUG[2022-04-09 08:08:18.949][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:18.950][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:18.951][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.TRACE[2022-04-09 08:08:23.504][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911).
biodb.DEBUG[2022-04-09 08:08:29.702][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:08:29.724][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.content"
biodb.TRACE[2022-04-09 08:08:29.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.request"
biodb.DEBUG[2022-04-09 08:08:30.151][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:30.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:30.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:30.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:30.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:30.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:30.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:30.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:30.161][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.165][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.170][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.171][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:30.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:30.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:30.174][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.175][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.176][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.179][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.181][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.184][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.185][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.186][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.187][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.189][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.190][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.196][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:30.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:30.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:30.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:30.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:30.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:30.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:30.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:30.214][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.219][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.223][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.224][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:30.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:30.226][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:30.227][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.228][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.230][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.233][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.234][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.238][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.239][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.240][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.242][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.246][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:30.247][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:30.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:30.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:30.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:30.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:30.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:30.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:30.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.304][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.305][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:30.306][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:30.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:30.308][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.309][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.310][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.312][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.313][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.315][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.318][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.319][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:30.320][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.321][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.324][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.329][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:30.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:30.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:30.340][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:30.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:30.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:30.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:30.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:30.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:30.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:30.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:30.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.DEBUG[2022-04-09 08:08:30.682][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:30.683][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:30.684][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.TRACE[2022-04-09 08:08:35.180][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435).
biodb.DEBUG[2022-04-09 08:08:41.121][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:08:41.142][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.content"
biodb.TRACE[2022-04-09 08:08:41.224][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.request"
biodb.DEBUG[2022-04-09 08:08:41.563][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:41.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:41.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:41.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:41.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:41.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:41.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:41.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.581][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.582][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:41.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:41.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:41.585][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.586][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.588][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.591][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.592][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.595][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.596][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.597][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.598][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.601][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:41.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:41.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:41.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:41.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:41.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:41.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:41.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:41.624][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.628][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.632][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.633][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:41.634][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:41.635][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:41.636][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.637][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.638][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.641][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.642][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.645][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.646][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.647][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.649][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.651][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.661][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:41.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:41.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:41.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:41.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:41.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:41.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:41.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.678][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.682][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.683][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:41.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:41.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:41.686][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.687][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.689][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.692][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.693][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.696][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.697][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:41.698][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.699][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.702][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:41.703][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.707][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.711][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:41.717][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:41.718][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:08:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:41.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:41.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.748][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:41.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:41.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:08:41.754][biodb::testThat] 
biodb.INFO [2022-04-09 08:08:41.755][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-04-09 08:08:41.756][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:08:41.757][biodb::testThat] 
biodb.TRACE[2022-04-09 08:08:41.760][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:41.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:41.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.764][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:41.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:41.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.768][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:41.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:41.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:41.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:41.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:41.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:41.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:41.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:08:41.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:41.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:41.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:41.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:41.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:41.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:41.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:42.043][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:08:42.046][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:08:42.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:08:42.049][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:08:42.080][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:08:42.839][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:42.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:42.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:42.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:42.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:42.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:42.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:42.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.871][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.872][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:42.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:42.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:42.875][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.876][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.877][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.880][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.881][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.884][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.885][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.886][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.888][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.891][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:42.892][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:42.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:42.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:42.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:42.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:42.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:42.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:42.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:42.914][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.922][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.923][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:42.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:42.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:42.927][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.928][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.929][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.932][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.933][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.936][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.937][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.938][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.939][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.942][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:42.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:42.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:42.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:42.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:42.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:42.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:42.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.969][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.973][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.974][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:42.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:42.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:42.977][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.978][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.979][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.981][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.982][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.983][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.986][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.987][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:42.988][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.989][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.993][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:43.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:43.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:43.002][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:43.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:43.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:43.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:43.008][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:43.009][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:43.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:43.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:43.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:43.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:43.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:43.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:43.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:43.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:08:43.224][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:08:43.225][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:08:43.227][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:08:43.259][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:08:44.023][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:44.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:44.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:44.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:44.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:44.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:44.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:44.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.036][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.041][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.042][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:44.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:44.044][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:44.044][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.046][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.047][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.050][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.051][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.054][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.055][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.056][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.057][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.060][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:44.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:44.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:44.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:44.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:44.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:44.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:44.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.091][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.092][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:44.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:44.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:44.095][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.096][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.097][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.100][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.101][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.104][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.106][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.107][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.108][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.111][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:44.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:44.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:44.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:44.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:44.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:44.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:44.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.142][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.143][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:44.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:44.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:44.146][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.147][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.149][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.164][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.166][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.169][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.170][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:44.171][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.172][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.175][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:44.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:44.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:44.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:44.190][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:44.191][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:44.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:44.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:44.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:44.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:44.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:44.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:44.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:44.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:08:44.397][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:08:44.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:08:44.400][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:08:44.434][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:08:45.236][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:45.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:45.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:45.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:45.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:45.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:45.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:45.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.251][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.255][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.256][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:45.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:45.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:45.259][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.261][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.262][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.265][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.266][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.269][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.270][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.271][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.273][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.276][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.281][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:45.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:45.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:45.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:45.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:45.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:45.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:45.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:45.300][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.309][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.310][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:45.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:45.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:45.313][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.314][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.315][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.318][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.319][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.320][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.323][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.324][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.325][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.327][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.345][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:45.346][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.350][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.355][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:45.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:45.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:45.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:45.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:45.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:45.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:45.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.373][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.377][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.378][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:45.379][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:45.380][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:45.381][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.382][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.384][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.387][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.388][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.391][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.392][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:45.393][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.394][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.397][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.407][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:45.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:45.413][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:45.414][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:08:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:08:45.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:08:45.450][biodb::testThat] 
biodb.INFO [2022-04-09 08:08:45.451][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-04-09 08:08:45.452][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:08:45.453][biodb::testThat] 
biodb.TRACE[2022-04-09 08:08:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:45.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.460][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:08:45.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:08:45.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:45.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:45.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:45.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:08:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:08:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:45.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:08:45.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:45.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:45.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:45.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:45.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:45.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:45.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:45.752][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:08:45.755][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:45.756][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:45.758][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:08:50.379][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:08:56.399][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:08:56.421][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content"
biodb.TRACE[2022-04-09 08:08:56.500][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.request"
biodb.DEBUG[2022-04-09 08:08:56.827][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:08:56.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:56.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:56.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:56.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:56.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:56.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:56.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:56.837][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.845][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.846][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:56.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:56.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:56.850][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.851][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.852][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.855][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.856][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.859][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.860][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.862][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.863][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.865][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.866][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:08:56.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:56.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:56.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:56.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:56.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:56.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:56.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:56.890][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.895][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.899][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.900][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:56.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:56.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:56.903][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.904][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.905][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.909][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.910][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.913][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.914][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.915][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.917][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.920][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:08:56.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:56.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:56.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:56.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:56.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:56.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:56.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:08:56.980][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.985][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.989][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.990][private$selectFields] 
biodb.TRACE[2022-04-09 08:08:56.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:08:56.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:08:56.994][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:56.995][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.996][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:56.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:56.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:56.999][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.000][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:57.002][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:57.003][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:57.004][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:08:57.005][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.007][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:57.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:57.010][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:08:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:08:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:08:57.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:08:57.024][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:08:57.025][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:08:57.026][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:08:57.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:08:57.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:08:57.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:08:57.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:08:57.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:08:57.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:08:57.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:08:57.235][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:08:57.238][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:08:57.240][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:08:57.241][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:09:01.691][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:09:07.726][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:09:07.748][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content"
biodb.TRACE[2022-04-09 08:09:07.832][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.request"
biodb.DEBUG[2022-04-09 08:09:08.173][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:08.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:08.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:08.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:08.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:08.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:08.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:08.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.188][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.193][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.194][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:08.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:08.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:08.197][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.198][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.199][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.202][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.203][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.206][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.208][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.209][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.210][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.213][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.223][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:08.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:08.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:08.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:08.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:08.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:08.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:08.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:08.237][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.241][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.246][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.247][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:08.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:08.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:08.250][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.251][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.252][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.256][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.257][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.260][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.261][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.262][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.263][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.267][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:08.268][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.296][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.301][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:08.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:08.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:08.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:08.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:08.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:08.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:08.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.319][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.320][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:08.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:08.322][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:08.323][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.324][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.325][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.328][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.329][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.332][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.333][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:08.334][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.335][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.338][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:08.340][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.344][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.348][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:08.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:08.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:08.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:08.354][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:08.355][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:08.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:08.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:08.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:08.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:08.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:08.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:08.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:08.568][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:08.571][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:09:08.572][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:09:08.574][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:09:13.053][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:09:19.193][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:09:19.216][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content"
biodb.TRACE[2022-04-09 08:09:19.296][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.request"
biodb.DEBUG[2022-04-09 08:09:19.636][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:19.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:19.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:19.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:19.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:19.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:19.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:19.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:19.646][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.650][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.654][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.655][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:19.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:19.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:19.658][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.659][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.660][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.664][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.665][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.668][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.669][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.670][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.671][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.674][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.684][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:19.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:19.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:19.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:19.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:19.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:19.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:19.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:19.698][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.702][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.707][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.708][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:19.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:19.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:19.711][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.712][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.713][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.716][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.718][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.721][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.722][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.723][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.724][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.727][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.749][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.754][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:19.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:19.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:19.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:19.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:19.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:19.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:19.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:19.768][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.772][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.777][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.778][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:19.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:19.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:19.781][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.782][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.783][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.786][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.788][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.790][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.791][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.792][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:19.793][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.794][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.796][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.797][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:19.798][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.803][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.807][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:19.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:19.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:19.813][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:19.814][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:19.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:19.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:19.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:19.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:19.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:19.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:19.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:20.039][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:20.042][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:20.044][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:09:20.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:20.077][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:09:20.872][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:20.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:20.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:20.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:20.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:20.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:20.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:20.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.886][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.890][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:20.891][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:20.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:20.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:20.895][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:20.896][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.897][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.900][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.901][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.904][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:20.919][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:20.921][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.922][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.925][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.935][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:20.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:20.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:20.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:20.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:20.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:20.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:20.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:20.949][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.954][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.958][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:20.959][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:20.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:20.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:20.963][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:20.964][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.965][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.968][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.969][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.972][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:20.974][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:20.975][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.976][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.979][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:20.980][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.984][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.989][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:20.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:20.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:20.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:20.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:20.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:20.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:20.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:21.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:21.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:21.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:21.007][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:21.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:21.012][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:21.013][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:21.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:21.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:21.016][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:21.017][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.018][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:21.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:21.021][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.022][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:21.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:21.025][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:21.026][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:21.028][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.029][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:21.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:21.032][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:21.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:21.037][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:21.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:21.042][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:21.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:21.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:21.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:21.048][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:21.049][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:21.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:21.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:21.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:21.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:21.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:21.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:21.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:21.266][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:21.270][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:21.271][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:09:21.273][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:21.305][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:09:22.106][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:22.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:22.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:22.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:22.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:22.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:22.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:22.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:22.117][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.121][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.125][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.127][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:22.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:22.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:22.130][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.131][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.132][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.135][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.136][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.140][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.141][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.142][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.143][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.146][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:22.147][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.152][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:22.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:22.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:22.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:22.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:22.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:22.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:22.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:22.170][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.174][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.179][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.180][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:22.181][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:22.182][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:22.183][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.184][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.185][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.188][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.190][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.193][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.194][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.195][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.196][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.199][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:22.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:22.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:22.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:22.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:22.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:22.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:22.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:22.224][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.228][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.233][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.234][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:22.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:22.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:22.237][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.238][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.239][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.242][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.244][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.247][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.248][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:22.249][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.250][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.253][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.278][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:22.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:22.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:22.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:22.284][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:22.285][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:22.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:22.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:22.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:22.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:22.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:22.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:22.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:22.493][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:09:22.497][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:22.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:09:22.500][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:22.533][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:09:23.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:23.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:23.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:23.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:23.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:23.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:23.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:23.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.369][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.370][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:23.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:23.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:23.373][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.374][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.376][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.379][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.380][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.383][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.385][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.386][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.387][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.389][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.390][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.400][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:23.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:23.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:23.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:23.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:23.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:23.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:23.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:23.414][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.418][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.423][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.424][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:23.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:23.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:23.427][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.428][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.429][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.431][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.432][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.434][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.436][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.437][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.438][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.439][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.440][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.442][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.443][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.449][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.454][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:23.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:23.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:23.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:23.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:23.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:23.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:23.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:23.481][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.485][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.490][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.491][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:23.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:23.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:23.494][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.495][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.496][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.499][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.500][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.504][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.505][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:23.506][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.507][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.510][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:23.511][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.516][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:23.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:23.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:23.526][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:23.527][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:23.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:23.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:23.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:23.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:23.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:23.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:23.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:23.759][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:23.762][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:09:23.763][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:09:23.765][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:09:28.552][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:09:34.597][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:09:34.661][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content"
biodb.TRACE[2022-04-09 08:09:34.761][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.request"
biodb.DEBUG[2022-04-09 08:09:35.090][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:35.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:35.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:35.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:35.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:35.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:35.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:35.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:35.100][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.105][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.109][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.110][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:35.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:35.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:35.113][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.115][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.116][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.119][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.120][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.123][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.125][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.126][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.127][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.130][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:35.131][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.136][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.140][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:35.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:35.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:35.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:35.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:35.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:35.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:35.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.159][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.163][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.164][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:35.165][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:35.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:35.167][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.169][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.170][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.173][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.174][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.178][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.179][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.180][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.181][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.184][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:35.186][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:35.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:35.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:35.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:35.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:35.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:35.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:35.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.234][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.235][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:35.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:35.237][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:35.238][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.239][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.240][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.243][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.245][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.248][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.249][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:35.250][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.251][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.254][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:35.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:35.270][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:35.271][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:35.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:35.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:35.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:35.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:35.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:35.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:35.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:35.479][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:35.483][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:09:35.484][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:09:35.485][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:09:40.395][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:09:46.371][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:09:46.394][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content"
biodb.TRACE[2022-04-09 08:09:46.477][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.request"
biodb.DEBUG[2022-04-09 08:09:46.809][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:46.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:46.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:46.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:46.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:46.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:46.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:46.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.823][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.828][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.829][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:46.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:46.831][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:46.832][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.833][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.834][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.837][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.838][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.840][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.841][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.842][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.843][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.845][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.848][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:46.849][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:46.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:46.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:46.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:46.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:46.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:46.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:46.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.880][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.881][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:46.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:46.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:46.884][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.885][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.886][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.889][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.890][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.892][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.893][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.895][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.896][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.897][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.900][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:46.901][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.930][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.939][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:46.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:46.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:46.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:46.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:46.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:46.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:46.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:46.948][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.953][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.957][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.958][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:46.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:46.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:46.961][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.963][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.964][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.967][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.968][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.971][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.972][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:46.973][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.975][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.978][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:46.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:46.993][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:46.994][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:46.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:46.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:46.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:47.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:47.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:47.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:47.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:47.198][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:47.201][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-09 08:09:47.202][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-09 08:09:47.204][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.TRACE[2022-04-09 08:09:51.979][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11).
biodb.DEBUG[2022-04-09 08:09:58.083][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-09 08:09:58.107][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content"
biodb.TRACE[2022-04-09 08:09:58.192][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.request"
biodb.DEBUG[2022-04-09 08:09:58.534][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:58.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:58.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:58.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:58.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:58.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:58.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:58.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.553][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.555][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:58.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:58.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:58.558][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.559][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.560][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.563][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.565][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.568][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.569][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.570][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.571][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.575][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.580][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.585][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:58.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:58.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:58.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:58.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:58.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:58.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:58.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.608][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.609][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:58.610][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:58.611][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:58.613][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.614][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.615][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.618][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.619][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.623][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.624][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.625][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.626][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.629][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.653][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.658][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:58.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:58.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:58.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:58.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:58.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:58.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:58.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:58.673][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.683][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.684][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:58.685][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:58.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:58.688][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.689][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.690][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.694][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.695][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.699][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.700][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:58.702][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.703][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.706][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.716][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:58.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:58.722][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:58.723][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:58.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:58.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:58.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:58.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:58.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:58.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:09:58.960][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:09:58.964][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:09:58.965][cch$loadFileContent] Trying to load 1 files from cache: [1]: "856708e2bbeea806179c75604ab7003a".
biodb.TRACE[2022-04-09 08:09:58.966][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:09:59.000][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content".
biodb.DEBUG[2022-04-09 08:09:59.810][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:09:59.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:59.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:59.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:59.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:59.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:59.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:59.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:59.820][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.829][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.830][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:59.831][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:59.832][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:59.833][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.834][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.835][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.853][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.855][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.858][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.859][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.860][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.862][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.865][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.870][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.880][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:09:59.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:59.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:59.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:59.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:59.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:59.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:59.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.893][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.898][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.899][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:59.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:59.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:59.902][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.903][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.904][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.907][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.908][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.911][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.913][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.914][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.915][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.918][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.923][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:09:59.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:59.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:59.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:59.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:59.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:59.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:59.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:09:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.946][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.951][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.952][private$selectFields] 
biodb.TRACE[2022-04-09 08:09:59.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:09:59.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:09:59.955][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.956][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.957][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.960][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.961][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.965][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.966][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:09:59.967][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.968][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.971][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:09:59.972][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.977][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.981][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:09:59.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:09:59.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:09:59.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:09:59.987][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:09:59.988][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:09:59.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:09:59.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:09:59.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:09:59.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:09:59.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:09:59.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:09:59.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:00.210][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:10:00.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:00.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "213dc74fea82b4e00a3de9c6296d60ac".
biodb.TRACE[2022-04-09 08:10:00.216][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:00.250][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content".
biodb.DEBUG[2022-04-09 08:10:01.076][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:01.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:01.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:01.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:01.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:01.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:01.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:01.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:01.087][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.091][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.097][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.098][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:01.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:01.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:01.101][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.102][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.103][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.106][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.108][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.111][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.112][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.113][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.114][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.117][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:01.118][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.123][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.127][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.132][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:10:01.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:01.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:01.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:01.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:01.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:01.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:01.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.150][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.151][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:01.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:01.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:01.154][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.155][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.156][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.160][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.161][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.164][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.165][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.166][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.167][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.170][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.180][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:10:01.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:01.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:01.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:01.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:01.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:01.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:01.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.198][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.203][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.204][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:01.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:01.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:01.207][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.208][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.209][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.213][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.214][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.217][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.218][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:01.219][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.220][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.224][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.243][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:01.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:10:01.254][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:01.255][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:01.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:01.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:01.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:01.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:01.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:01.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:01.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:01.464][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:10:01.467][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:01.468][cch$loadFileContent] Trying to load 1 files from cache: [1]: "599a9d63e9d10326d614f066b3a2769e".
biodb.TRACE[2022-04-09 08:10:01.470][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:01.503][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content".
biodb.DEBUG[2022-04-09 08:10:02.317][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:02.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:02.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:02.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:02.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:02.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:02.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:02.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:02.327][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.331][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.336][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.337][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:02.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:02.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:02.340][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.341][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.342][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.345][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.347][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.350][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.351][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.352][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.353][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.356][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:02.358][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.366][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:10:02.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:02.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:02.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:02.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:02.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:02.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:02.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:02.380][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.389][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.390][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:02.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:02.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:02.393][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.394][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.395][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.398][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.400][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.403][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.404][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.405][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.406][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.409][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.419][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:10:02.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:02.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:02.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:02.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:02.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:02.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:02.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:02.448][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.456][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.457][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:02.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:02.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:02.461][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.462][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.463][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.466][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.467][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.470][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.471][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:02.472][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.474][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.477][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:02.478][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.482][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:02.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:10:02.492][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:02.493][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:02.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:02.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:02.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:02.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:02.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:02.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:02.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:02.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:02.727][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:02.728][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:10:02.730][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:02.763][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:10:03.574][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:03.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:03.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:03.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:03.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:03.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:03.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:03.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:03.584][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.593][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.594][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:03.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:03.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:03.598][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.599][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.600][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.603][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.604][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.608][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.609][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.624][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.626][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.629][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.635][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:10:03.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:03.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:03.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:03.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:03.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:03.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:03.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:03.654][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.658][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.663][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.664][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:03.665][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:03.666][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:03.667][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.668][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.669][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.673][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.674][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.677][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.678][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.679][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.680][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.684][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:03.685][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.689][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.694][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:10:03.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:03.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:03.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:03.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:03.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:03.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:03.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:03.709][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.714][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.718][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.720][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:03.721][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:03.722][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:03.723][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.724][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.725][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.729][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.730][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.733][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.734][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:03.735][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.737][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.740][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:03.741][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.750][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:03.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:03.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:10:03.756][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:03.757][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:03.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:03.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:03.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:03.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:03.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:03.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:03.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:03.999][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:04.002][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:04.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:10:04.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:04.038][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:10:04.840][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:04.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:04.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:04.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:04.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:04.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:04.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:04.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:04.850][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.859][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.860][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:04.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:04.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:04.863][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.864][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.866][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.869][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.870][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.873][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.874][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.875][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.876][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.880][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:04.881][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.885][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.890][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.895][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:10:04.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:04.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:04.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:04.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:04.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:04.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:04.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.909][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.914][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.915][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:04.916][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:04.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:04.918][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.919][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.920][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.924][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.925][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.928][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.929][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.930][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.931][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.935][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:04.936][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.940][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.945][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:10:04.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:04.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:04.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:04.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:04.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:04.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:04.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.963][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.968][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.969][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:04.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:04.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:04.972][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.973][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.974][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.978][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.979][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.981][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.982][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.983][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:04.984][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.985][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:04.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:04.989][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:04.990][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:04.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:05.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:05.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:05.009][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:05.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:05.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:05.013][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:05.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:05.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:05.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:10:05.019][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:05.020][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:05.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:05.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:05.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:05.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:05.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:05.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:05.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:05.235][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:05.239][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:05.240][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:10:05.242][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:05.275][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:10:06.088][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:06.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:06.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:06.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:06.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:06.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:06.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:06.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:06.098][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.102][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.107][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.108][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:06.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:06.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:06.111][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.112][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.114][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.117][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.118][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.121][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.122][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.123][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.125][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.128][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:06.129][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.138][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:10:06.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:06.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:06.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:06.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:06.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:06.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:06.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:06.152][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.161][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.162][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:06.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:06.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:06.165][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.166][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.168][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.171][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.172][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.175][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.176][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.177][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.179][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.182][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:06.183][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.188][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.206][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:10:06.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:06.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:06.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:06.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:06.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:06.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:06.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.225][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.229][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.230][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:06.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:06.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:06.234][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.235][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.236][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.239][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.240][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.243][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.245][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:06.246][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.247][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.250][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.256][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.260][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:06.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:06.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:10:06.266][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:06.267][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:06.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:06.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:06.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:06.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:06.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:06.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:06.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:06.503][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:10:06.506][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:06.508][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ec7b47285bd6f593d724b6f7745f0646".
biodb.TRACE[2022-04-09 08:10:06.509][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:06.542][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content".
biodb.DEBUG[2022-04-09 08:10:07.353][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:07.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:07.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:07.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:07.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:07.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:07.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:07.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:07.363][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.372][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.373][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:07.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:07.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:07.377][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.378][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.379][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.395][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.397][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.400][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.402][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.403][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.404][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.407][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.417][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:10:07.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:07.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:07.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:07.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:07.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:07.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:07.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:07.432][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.440][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.441][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:07.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:07.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:07.445][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.446][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.447][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.450][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.451][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.455][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.456][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.457][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.458][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.461][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:07.462][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.467][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.471][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:10:07.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:07.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:07.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:07.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:07.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:07.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:07.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:07.485][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.494][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.495][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:07.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:07.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:07.499][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.500][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.501][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.504][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.505][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.508][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.510][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:07.511][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.512][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.515][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.521][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.525][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:07.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:07.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:07.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:10:07.531][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:07.532][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:07.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:07.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:07.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:07.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:07.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:07.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:07.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:07.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:10:07.759][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:07.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "236b5f2d20f6da60d3d5e29141c3c6fd".
biodb.TRACE[2022-04-09 08:10:07.762][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:07.795][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content".
biodb.DEBUG[2022-04-09 08:10:08.606][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:08.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:08.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:08.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:08.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:08.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:08.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:08.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:08.616][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.620][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.625][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.626][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:08.627][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:08.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:08.629][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.630][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.631][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.635][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.636][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.639][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.640][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.641][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.642][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.645][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:08.647][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.651][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.656][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:10:08.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:08.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:08.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:08.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:08.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:08.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:08.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:08.669][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.674][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.678][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.679][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:08.680][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:08.681][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:08.682][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.684][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.685][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.688][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.689][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.692][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.693][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.694][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.696][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.699][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:08.700][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:10:08.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:08.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:08.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:08.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:08.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:08.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:08.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:08.723][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.732][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.733][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:08.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:08.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:08.736][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.737][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.738][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.741][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.743][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.759][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.761][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.762][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:08.763][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.764][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.767][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:08.769][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.773][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.777][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:08.782][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:10:08.783][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:08.784][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:08.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:08.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:08.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:08.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:08.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:08.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:08.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:08.995][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-04-09 08:10:08.998][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:09.000][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c0ec3345a6e512e30aa3c52ef1c02f40".
biodb.TRACE[2022-04-09 08:10:09.001][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:09.034][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content".
biodb.DEBUG[2022-04-09 08:10:09.846][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:09.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:09.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:09.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:09.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:09.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:09.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:09.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:09.856][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.860][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.865][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.866][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:09.867][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:09.868][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:09.869][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.870][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.871][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.874][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.876][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.879][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.880][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.881][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.882][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.884][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.885][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:09.886][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.895][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-04-09 08:10:09.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:09.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:09.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:09.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:09.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:09.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:09.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.914][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.919][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.920][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:09.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:09.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:09.923][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.924][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.925][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.928][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.930][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.946][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.948][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.949][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.950][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.953][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:09.955][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.968][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-04-09 08:10:09.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:09.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:09.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:09.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:09.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:09.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:09.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:09.978][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.982][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.986][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.988][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:09.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:09.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:09.991][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:09.992][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.993][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:09.996][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.997][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:09.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:09.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.000][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:10.002][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-04-09 08:10:10.003][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:10.004][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:10.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.007][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-04-09 08:10:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:10.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:10.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.012][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:10.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:10.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:10.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-04-09 08:10:10.023][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:10.024][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:10:10.045][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:10.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:10.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:10.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.054][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:10.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:10:10.059][biodb::testThat] 
biodb.INFO [2022-04-09 08:10:10.060][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-04-09 08:10:10.062][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:10:10.063][biodb::testThat] 
biodb.TRACE[2022-04-09 08:10:10.066][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:10:10.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:10:10.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.070][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:10:10.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:10:10.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.075][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:10:10.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:10:10.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:10:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:10:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:10:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:10:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:10:10.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:10:10.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:10:10.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:10.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:10.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:10.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:10.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:10.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:10.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:10.374][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:10.377][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:10.379][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:10:10.380][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:10.414][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:10:11.223][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:11.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:11.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:11.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:11.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:11.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:11.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:11.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.260][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.265][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.297][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.298][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:11.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:11.315][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:11.316][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.317][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.322][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.323][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.326][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.329][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.331][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.332][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.339][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.348][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.352][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.353][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.357][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.361][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.362][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.370][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.377][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.379][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.380][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.381][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.385][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.386][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.390][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.394][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.395][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.398][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.403][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.408][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.412][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:11.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.454][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.463][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.526][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:10:11.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:11.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:11.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:11.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:11.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:11.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:11.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:11.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.562][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.598][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.599][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:11.600][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:11.601][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:11.602][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.604][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.608][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.609][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.613][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.617][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.618][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.626][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.635][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.639][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.640][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.643][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.648][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.649][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.668][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.678][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.679][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.680][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.684][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.685][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.688][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.693][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.694][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.701][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.703][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.710][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:11.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.760][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.808][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:10:11.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:11.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:11.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:11.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:11.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:11.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:11.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.860][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.890][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.891][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:11.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:11.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:11.894][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.895][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.900][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.901][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.904][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.909][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.910][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.918][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.922][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.923][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.926][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.931][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.932][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.935][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.939][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.941][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.943][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.944][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.947][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.948][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.957][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.958][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:11.959][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.963][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.964][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:11.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.967][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:11.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:11.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.972][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.973][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:11.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:11.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.980][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:11.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:11.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:11.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.989][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:11.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:11.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:11.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:11.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:11.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:12.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:12.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:12.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:12.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:12.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:12.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:12.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:12.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:12.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:12.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.042][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:12.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:12.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.046][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:12.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:12.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.050][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:12.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:12.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:12.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:12.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:12.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:12.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:12.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:12.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:12.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:12.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:12.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:12.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:12.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:12.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:12.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:10:12.100][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:12.101][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:12.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:12.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:12.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:12.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:12.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:12.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:12.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:12.318][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:12.321][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:12.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:10:12.324][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:12.358][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:10:13.179][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:13.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:13.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:13.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:13.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:13.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:13.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:13.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:13.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.230][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.234][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.266][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.267][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:13.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:13.269][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:13.270][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.271][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.275][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.277][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.280][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.284][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.285][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.292][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.301][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.305][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.307][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.309][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.310][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.314][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.315][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.323][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.331][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.332][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.333][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.338][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.339][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.342][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.346][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.347][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.351][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.354][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.355][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.364][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.475][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:10:13.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:13.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:13.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:13.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:13.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:13.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:13.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:13.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.511][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.515][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.546][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.547][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:13.560][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:13.561][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:13.562][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.563][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.568][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.569][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.572][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.576][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.578][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.585][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.586][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.588][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.594][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.599][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.603][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.607][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.608][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.616][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.617][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.621][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.625][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.626][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.627][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.631][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.632][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.636][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.637][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.640][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.641][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.649][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.657][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.698][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.703][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.768][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:10:13.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:13.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:13.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:13.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:13.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:13.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:13.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:13.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.838][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.839][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:13.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:13.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:13.842][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.843][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.848][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.849][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.852][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.855][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.856][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.857][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.860][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.862][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.865][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.873][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.878][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.879][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.882][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.887][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.888][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.907][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.916][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.917][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:13.918][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.922][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.924][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.926][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.927][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.931][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.932][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:13.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.939][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.940][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:13.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:13.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.943][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:13.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.947][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.948][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:13.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:13.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:13.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:13.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.990][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:13.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:13.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:13.999][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:14.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:14.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:14.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:14.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:14.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:14.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:14.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:14.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:14.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:14.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:14.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:14.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:14.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:10:14.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:14.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:14.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:14.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:14.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:14.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:14.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:14.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:14.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:14.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:14.277][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:14.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:10:14.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:14.313][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:10:15.121][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:15.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:15.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:15.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:15.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:15.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:15.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:15.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:15.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.192][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.194][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:15.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:15.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:15.197][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.198][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.202][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.203][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.206][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.211][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.212][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.220][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.223][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.228][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.233][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.234][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.237][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.242][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.243][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.265][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.274][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.275][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.276][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.281][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.282][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.285][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.289][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.290][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.293][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.298][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.306][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:15.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.352][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:10:15.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:15.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:15.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:15.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:15.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:15.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:15.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:15.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.452][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.456][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.486][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.487][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:15.488][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:15.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:15.491][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.492][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.496][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.497][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.500][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.504][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.506][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.513][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.514][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.522][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.527][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.530][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.534][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.536][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.543][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.547][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.548][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.552][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.553][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.554][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.558][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.559][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.562][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.567][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.568][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.575][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.584][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:15.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.646][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:10:15.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:15.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:15.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:15.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:15.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:15.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:15.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.776][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.777][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:15.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:15.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:15.780][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.781][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.785][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.786][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.790][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.794][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.795][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.802][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.811][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.815][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.816][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.820][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.824][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.825][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.832][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.840][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.841][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.842][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:15.843][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.847][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.848][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.851][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.855][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.856][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.857][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.860][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.861][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.864][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.865][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.873][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:15.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:15.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:15.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:15.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.918][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.934][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:15.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:15.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:15.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:15.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:15.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:10:15.985][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:15.986][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:15.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:15.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:15.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:15.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:15.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:16.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:16.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:16.206][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:16.209][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:16.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-04-09 08:10:16.212][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:16.245][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-04-09 08:10:17.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:17.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:17.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:17.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:17.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:17.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:17.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:17.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:17.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.156][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:17.157][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:17.158][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:17.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:17.160][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:17.162][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.166][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.167][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.170][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.174][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.176][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.183][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.191][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.193][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.196][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.200][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.201][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.204][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.207][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.208][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.210][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.213][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.214][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.217][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.226][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.227][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.230][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:17.231][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:17.232][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.236][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.237][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.241][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.245][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.246][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.253][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.262][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.457][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.465][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.513][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:10:17.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:17.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:17.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:17.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:17.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:17.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:17.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.548][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.552][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.591][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:17.592][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:17.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:17.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:17.595][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:17.596][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.601][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.602][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.606][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.611][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.612][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.621][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.631][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.632][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.640][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.645][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.646][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.649][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.653][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.654][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.661][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.670][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.671][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.674][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:17.675][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:17.676][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.681][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.682][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.685][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.688][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.689][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.690][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.697][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.706][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.751][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:10:17.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:17.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:17.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:17.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:17.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:17.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:17.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:17.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.848][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.887][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:17.888][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:17.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:17.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:17.891][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:17.892][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.895][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.896][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.897][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.900][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.904][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.906][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.909][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.913][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.916][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.921][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.923][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.926][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.930][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.931][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.934][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.938][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.940][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.947][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.955][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.957][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:17.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.960][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:17.961][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:17.962][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.966][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.967][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:17.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.970][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:17.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:17.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.975][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.976][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:17.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:17.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.983][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:17.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:17.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:17.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.992][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:17.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:17.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:17.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:17.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:18.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:18.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:18.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:18.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.040][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:18.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:18.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:18.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.048][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:18.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:18.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:18.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:18.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:18.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:18.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:18.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:18.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:18.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:10:18.097][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:18.098][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:18.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:18.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:18.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:18.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:18.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:18.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:18.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:18.314][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:18.317][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:18.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-04-09 08:10:18.320][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:18.354][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-04-09 08:10:19.171][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:19.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:19.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:19.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:19.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:19.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:19.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:19.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:19.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.208][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.252][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:19.253][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:19.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:19.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:19.257][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:19.283][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.288][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.289][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.292][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.296][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.298][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.305][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.306][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.314][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.315][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.318][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.322][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.323][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.326][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.328][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.331][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.332][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.340][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.349][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.351][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.354][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:19.355][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:19.356][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.360][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.361][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.364][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.368][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.370][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.377][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.385][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:19.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.427][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.436][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:10:19.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:19.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:19.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:19.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:19.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:19.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:19.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:19.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.525][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.530][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.568][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:19.569][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:19.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:19.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:19.572][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:19.573][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.578][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.579][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.582][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.586][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.587][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.590][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.594][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.603][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.604][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.607][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.611][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.612][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.616][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.620][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.621][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.627][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.628][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.645][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.646][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.649][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:19.650][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:19.651][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.655][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.656][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.659][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.663][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.665][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.672][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.680][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:19.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.725][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.729][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:10:19.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:19.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:19.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:19.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:19.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:19.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:19.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.812][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.823][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.862][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:19.863][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:19.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:19.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:19.866][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:19.867][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.871][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.873][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.876][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.880][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.881][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.888][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.895][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.896][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.897][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.898][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.901][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.905][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.906][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.909][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.912][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.914][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.915][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.922][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.930][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.932][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:19.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.935][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:19.936][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:19.937][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.941][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.942][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.945][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:19.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:19.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.949][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.951][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:19.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.954][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.955][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:19.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.958][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:19.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:19.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:19.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.966][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:19.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:19.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:19.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:19.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:19.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:19.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:20.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:20.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.019][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.023][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:20.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:20.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:20.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:20.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:20.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:20.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:20.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:20.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:20.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:20.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:20.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:20.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:20.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:20.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:20.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:10:20.072][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:20.073][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:10:20.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:20.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:20.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:20.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:20.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:20.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:20.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:10:20.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-04-09 08:10:20.283][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:10:20.284][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-04-09 08:10:20.286][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:10:20.320][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-04-09 08:10:21.133][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:10:21.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:21.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:21.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:21.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:21.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:21.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:21.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:21.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.233][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:21.234][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:21.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:21.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:21.237][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:21.238][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.243][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.244][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.247][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.251][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.253][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.260][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.269][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.270][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.273][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.277][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.278][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.282][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.286][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.287][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.294][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.300][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.303][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.304][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.308][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:21.309][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:21.310][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.314][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.315][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.318][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.323][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.324][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.331][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.340][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.396][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.401][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.449][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000001, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, 626.491025, ...].
biodb.DEBUG[2022-04-09 08:10:21.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:21.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:21.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:21.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:21.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:21.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:21.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:21.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.485][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.489][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.529][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:21.530][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:21.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:21.532][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:21.533][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:21.534][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.539][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.540][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.543][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.556][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.558][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.559][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.566][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.575][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.576][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.580][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.584][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.585][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.588][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.593][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.594][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.601][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.606][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.610][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.611][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.614][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:21.615][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:21.616][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.621][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.622][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.625][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.629][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.630][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.638][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.646][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.688][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.692][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000002, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, 275.173274, ...].
biodb.DEBUG[2022-04-09 08:10:21.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:10:21.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:21.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:21.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:21.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:21.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:21.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:10:21.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.790][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.834][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:21.835][private$selectFields] 
biodb.TRACE[2022-04-09 08:10:21.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:10:21.837][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:10:21.838][private$selectFields] Fields [8]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-04-09 08:10:21.839][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.844][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.845][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.848][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.852][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.854][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.861][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.866][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.870][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.871][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.874][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.879][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.880][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.883][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.887][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.888][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.906][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.913][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.914][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.915][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:10:21.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.918][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:21.920][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-04-09 08:10:21.921][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.922][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.925][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.926][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.928][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.929][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.934][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.935][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:21.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.942][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:21.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:21.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:21.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.951][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-04-09 08:10:21.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:10:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:10:21.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-04-09 08:10:21.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:10:21.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:10:21.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.992][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:21.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.001][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:22.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-04-09 08:10:22.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:22.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:22.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:22.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:22.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:22.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:10:22.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:22.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:22.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:22.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:22.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:10:22.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:10:22.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:22.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:22.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:22.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-04-09 08:10:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-04-09 08:10:22.051][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:10:22.052][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:10:22.057][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:22.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:22.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.062][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:22.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:10:22.066][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:10:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:10:22.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:10:22.082][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-09 08:10:22.083][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2022-04-09 08:10:22.084][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2022-04-09 08:10:22.085][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-09 08:10:22.086][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:10:22.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:10:22.088][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:10:22.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:10:22.090][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:10:22.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 371 ]
> 
> proc.time()
   user  system elapsed 
 63.274   3.280 173.570

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.14-bioc-longtests/meat/biodbLipidmaps.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbLipidmaps/DESCRIPTION’ ... OK
* this is package ‘biodbLipidmaps’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbLipidmaps’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbLipidmaps.Rcheck/00install.out

* installing *source* package ‘biodbLipidmaps’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbLipidmaps)