SamSPECTRAL 1.14.1
Habil Zare
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/SamSPECTRAL | | Last Changed Rev: 75509 / Revision: 76155 | | Last Changed Date: 2013-04-10 10:14:28 -0700 (Wed, 10 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.14.1.tar.gz'
>>>>>>>
* installing *source* package 'SamSPECTRAL' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c Rinit.c -o Rinit.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c conductance_computation.c -o conductance_computation.o
conductance_computation.c:152:20: warning: unused variable 'memberLen' [-Wunused-variable]
int communityNum, memberLen, i, j, pointNum, dimention;
^
conductance_computation.c:153:31: warning: unused variable 'dj' [-Wunused-variable]
double * coords, nbhood, di, dj, sigma, betaa,
^
conductance_computation.c:153:27: warning: unused variable 'di' [-Wunused-variable]
double * coords, nbhood, di, dj, sigma, betaa,
^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c maximum_of_rows.c -o maximum_of_rows.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o SamSPECTRAL.so Rinit.o conductance_computation.o maximum_of_rows.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'SamSPECTRAL'
* DONE (SamSPECTRAL)
>>>>>>>
>>>>>>> FIXING LINKS FOR SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"