topGO

topGO: Enrichment analysis for Gene Ontology

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Author	Adrian Alexa, Jorg Rahnenfuhrer
Maintainer	Adrian Alexa

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("topGO")

Vignettes (Documentation)

Package Downloads

topGO.pdf

Source	topGO_1.8.1.tar.gz
Windows binary	topGO_1.8.1.zip
OS X binary	topGO_1.8.1.tgz

Details

biocViews	Microarray , Statistics , Visualization
Depends	R, methods, graph, Biobase, GO.db, AnnotationDbi, SparseM
Suggests	ALL, hgu95av2.db, genefilter, xtable, multtest, Rgraphviz, hgu133a.db
Imports	methods, graph, Biobase, SparseM, AnnotationDbi
SystemRequirements
License	LGPL
URL
dependsOnMe
suggestsMe