| Back to Rapid builds (Linux only) of a subset of BioC 3.21 Report updated every 6 hours |
This page was generated on 2024-12-04 09:55 -0500 (Wed, 04 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-11-14 r87333) -- "Unsuffered Consequences" | 861 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/216 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| supraHex 1.45.0 (landing page) Hai Fang
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
|
To the developers/maintainers of the supraHex package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: supraHex |
| Version: 1.45.0 |
| Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data supraHex |
| StartedAt: 2024-12-04 07:42:50 -0500 (Wed, 04 Dec 2024) |
| EndedAt: 2024-12-04 07:43:01 -0500 (Wed, 04 Dec 2024) |
| EllapsedTime: 11.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data supraHex ### ############################################################################## ############################################################################## * checking for file ‘supraHex/DESCRIPTION’ ... OK * preparing ‘supraHex’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘supraHex_vignettes.Rnw’ using Sweave Loading required package: hexbin Start at 2024-12-04 07:42:58.741225 First, define topology of a map grid (2024-12-04 07:42:58.741887)... Second, initialise the codebook matrix (169 X 6) using 'linear' initialisation, given a topology and input data (2024-12-04 07:42:58.741887)... Third, get training at the rough stage (2024-12-04 07:42:58.753183)... 1 out of 2 (2024-12-04 07:42:58.754917) updated (2024-12-04 07:42:58.774673) 2 out of 2 (2024-12-04 07:42:58.774957) updated (2024-12-04 07:42:58.799433) Fourth, get training at the finetune stage (2024-12-04 07:42:58.799752)... 1 out of 7 (2024-12-04 07:42:58.800904) updated (2024-12-04 07:42:58.827048) 2 out of 7 (2024-12-04 07:42:58.827314) updated (2024-12-04 07:42:58.83844) 3 out of 7 (2024-12-04 07:42:58.838653) updated (2024-12-04 07:42:58.849579) 4 out of 7 (2024-12-04 07:42:58.849803) updated (2024-12-04 07:42:58.863959) 5 out of 7 (2024-12-04 07:42:58.864172) updated (2024-12-04 07:42:58.884457) 6 out of 7 (2024-12-04 07:42:58.884697) updated (2024-12-04 07:42:58.895792) 7 out of 7 (2024-12-04 07:42:58.896022) updated (2024-12-04 07:42:58.906909) Next, identify the best-matching hexagon/rectangle for the input data (2024-12-04 07:42:58.907166)... Finally, append the response data (hits and mqe) into the sMap object (2024-12-04 07:42:58.917864)... Below are the summaries of the training results: dimension of input data: 1000x6 xy-dimension of map grid: xdim=15, ydim=15, r=8 grid lattice: hexa grid shape: suprahex dimension of grid coord: 169x2 initialisation method: linear dimension of codebook matrix: 169x6 mean quantization error: 2.00828580487905 Below are the details of trainology: training algorithm: batch alpha type: invert training neighborhood kernel: gaussian trainlength (x input data length): 2 at rough stage; 7 at finetune stage radius (at rough stage): from 4 to 1 radius (at finetune stage): from 1 to 1 End at 2024-12-04 07:42:59.261152 Runtime in total is: 1 secs Warning: The `path` argument of `write_delim()` is deprecated as of readr 1.4.0. ℹ Please use the `file` argument instead. ℹ The deprecated feature was likely used in the supraHex package. Please report the issue to the authors. Error: processing vignette 'supraHex_vignettes.Rnw' failed with diagnostics: chunk 18 Error in igraph::as_data_frame(., what = "edge") : `arg` must be one of "edges", "vertices", or "both", not "edge". ℹ Did you mean "edges"? --- failed re-building ‘supraHex_vignettes.Rnw’ SUMMARY: processing the following file failed: ‘supraHex_vignettes.Rnw’ Error: Vignette re-building failed. Execution halted