Angelo Velle
| Snapshot Date: 2024-12-10 13:40 -0500 (Tue, 10 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/gINTomics |
| git_branch: devel |
| git_last_commit: 3ba788e |
| git_last_commit_date: 2024-10-29 11:30:48 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-11 11:44 -0500 (Wed, 11 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4752 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4464 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4414 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4369 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4277 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 859/2273 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gINTomics 1.3.0 (landing page) Angelo Velle
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the gINTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gINTomics |
| Version: 1.3.0 |
| Command: rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gINTomics_1.3.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R gINTomics.buildbin-libdir |
| StartedAt: 2024-12-11 03:52:07 -0500 (Wed, 11 Dec 2024) |
| EndedAt: 2024-12-11 03:53:56 -0500 (Wed, 11 Dec 2024) |
| EllapsedTime: 109.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: gINTomics_1.3.0.tgz |
| PackageFileSize: 3.846 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gINTomics_1.3.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R gINTomics.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gINTomics.buildbin-libdir gINTomics_1.3.0.tar.gz' >>>>>>> * installing *source* package ‘gINTomics’ ... ** using staged installation ** R [2024-12-11 03:52:28] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-11 03:52:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:28] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:52:28] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-11 03:52:28] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:52:28] [TRACE] [OmnipathR] Contains 6 files. [2024-12-11 03:52:28] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-11 03:52:28] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-11 03:52:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:28] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:52:28] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-12-11 03:52:28] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-11 03:52:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:28] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-11 03:52:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:28] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-11 03:52:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:28] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-11 03:52:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:28] [TRACE] [OmnipathR] Cache locked: FALSE ** data ** inst ** byte-compile and prepare package for lazy loading [2024-12-11 03:52:52] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-11 03:52:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:52] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:52:52] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-11 03:52:52] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:52:52] [TRACE] [OmnipathR] Contains 1 files. [2024-12-11 03:52:52] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-11 03:52:52] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-11 03:52:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:52] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:52:52] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-12-11 03:52:52] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-11 03:52:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:52] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-11 03:52:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:52] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-11 03:52:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:52] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-11 03:52:52] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:52:52] [TRACE] [OmnipathR] Cache locked: FALSE ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-12-11 03:53:23] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-11 03:53:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:23] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:53:23] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-11 03:53:23] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:53:23] [TRACE] [OmnipathR] Contains 1 files. [2024-12-11 03:53:23] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-11 03:53:23] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-11 03:53:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:23] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:53:23] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-12-11 03:53:23] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-11 03:53:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:23] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-11 03:53:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:23] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-11 03:53:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:23] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-11 03:53:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:23] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-12-11 03:53:47] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-11 03:53:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:47] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:53:47] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-11 03:53:47] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:53:47] [TRACE] [OmnipathR] Contains 1 files. [2024-12-11 03:53:47] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-11 03:53:47] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-11 03:53:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:47] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-11 03:53:48] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-12-11 03:53:48] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-11 03:53:48] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:48] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-11 03:53:48] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:48] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-11 03:53:48] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:48] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-11 03:53:48] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-11 03:53:48] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (gINTomics)