Arkadiusz Gladki
| Snapshot Date: 2024-12-10 13:40 -0500 (Tue, 10 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/gDRimport |
| git_branch: devel |
| git_last_commit: eb06334 |
| git_last_commit_date: 2024-12-10 08:37:07 -0500 (Tue, 10 Dec 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-11 11:40 -0500 (Wed, 11 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4752 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4464 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4414 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4369 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4277 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 773/2273 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gDRimport 1.5.4 (landing page) Arkadiusz Gladki
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the gDRimport package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gDRimport |
| Version: 1.5.4 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings gDRimport_1.5.4.tar.gz |
| StartedAt: 2024-12-11 00:00:16 -0500 (Wed, 11 Dec 2024) |
| EndedAt: 2024-12-11 00:07:10 -0500 (Wed, 11 Dec 2024) |
| EllapsedTime: 414.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gDRimport.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings gDRimport_1.5.4.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/gDRimport.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gDRimport’ version ‘1.5.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gDRimport’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
convert_MAE_to_PSet 6.55 0.262 6.813
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
gDRimport.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL gDRimport ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘gDRimport’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gDRimport)
gDRimport.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(gDRimport)
>
> test_check("gDRimport")
2024-12-11 00:06:10 Building assay index...
2024-12-11 00:06:10 Joining rowData to assayIndex...
2024-12-11 00:06:10 Joining colData to assayIndex...
2024-12-11 00:06:11 Joining assays to assayIndex...
2024-12-11 00:06:12 Setting assayIndex key...
2024-12-11 00:06:13 Building LongTable...
2024-12-11 00:06:14 Building assay index...
2024-12-11 00:06:14 Joining rowData to assayIndex...
2024-12-11 00:06:15 Joining colData to assayIndex...
2024-12-11 00:06:15 Joining assays to assayIndex...
2024-12-11 00:06:17 Setting assayIndex key...
2024-12-11 00:06:17 Building LongTable...
INFO [2024-12-11 00:06:18] Manifest loaded successfully
INFO [2024-12-11 00:06:18] Manifest loaded successfully
INFO [2024-12-11 00:06:18] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-11 00:06:18] Plate 201904190a read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904190b read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904190c read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904190d read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904190e read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904190f read; 384 wells
INFO [2024-12-11 00:06:18] File done
INFO [2024-12-11 00:06:18] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-11 00:06:18] Plate 201904197a read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904197b read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904197c read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904197d read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904197e read; 384 wells
INFO [2024-12-11 00:06:18] Plate 201904197f read; 384 wells
INFO [2024-12-11 00:06:18] File done
INFO [2024-12-11 00:06:18] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-11 00:06:19] Plate 201904190a read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190b read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190c read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190d read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190e read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190f read; 384 wells
INFO [2024-12-11 00:06:19] File done
INFO [2024-12-11 00:06:19] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-11 00:06:19] Plate 201904197a read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904197b read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904197c read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904197d read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904197e read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904197f read; 384 wells
INFO [2024-12-11 00:06:19] File done
INFO [2024-12-11 00:06:19] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-11 00:06:19] Plate 201904190a read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190b read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190c read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190d read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190e read; 384 wells
INFO [2024-12-11 00:06:19] Plate 201904190f read; 384 wells
INFO [2024-12-11 00:06:19] File done
INFO [2024-12-11 00:06:19] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-12-11 00:06:20] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-12-11 00:06:20] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-12-11 00:06:20] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-12-11 00:06:20] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:20] Loading Template_7daytreated.xlsx
INFO [2024-12-11 00:06:20] Loading Template_Untreated.xlsx
INFO [2024-12-11 00:06:20] Templates loaded successfully!
INFO [2024-12-11 00:06:20] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:20] Loading Template_7daytreated.xlsx
INFO [2024-12-11 00:06:20] Loading Template_Untreated.xlsx
INFO [2024-12-11 00:06:20] Templates loaded successfully!
INFO [2024-12-11 00:06:20] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:20] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-12-11 00:06:20] Templates loaded successfully!
INFO [2024-12-11 00:06:20] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:20] Loading Template_7daytreated.xlsx
INFO [2024-12-11 00:06:20] Templates loaded successfully!
INFO [2024-12-11 00:06:21] Manifest loaded successfully
INFO [2024-12-11 00:06:21] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:21] Loading Template_7daytreated.xlsx
INFO [2024-12-11 00:06:21] Loading Template_Untreated.xlsx
INFO [2024-12-11 00:06:21] Templates loaded successfully!
INFO [2024-12-11 00:06:21] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-11 00:06:21] Plate 201904190a read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904190b read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904190c read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904190d read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904190e read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904190f read; 384 wells
INFO [2024-12-11 00:06:21] File done
INFO [2024-12-11 00:06:21] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-11 00:06:21] Plate 201904197a read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904197b read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904197c read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904197d read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904197e read; 384 wells
INFO [2024-12-11 00:06:21] Plate 201904197f read; 384 wells
INFO [2024-12-11 00:06:21] File done
INFO [2024-12-11 00:06:22] Manifest loaded successfully
INFO [2024-12-11 00:06:22] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:22] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-12-11 00:06:22] Templates loaded successfully!
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-12-11 00:06:22] Manifest loaded successfully
INFO [2024-12-11 00:06:22] Reading Project40.treated.template.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:22] Loading Project40.treated.template.xlsx
INFO [2024-12-11 00:06:22] Loading Project40.untreated.template.xlsx
INFO [2024-12-11 00:06:22] Templates loaded successfully!
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0
INFO [2024-12-11 00:06:22] Plate H0109269D00 read; 384 wells
INFO [2024-12-11 00:06:22] File done
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0
INFO [2024-12-11 00:06:22] Plate H0109269D01 read; 384 wells
INFO [2024-12-11 00:06:22] File done
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0
INFO [2024-12-11 00:06:22] Plate H0309269D00 read; 384 wells
INFO [2024-12-11 00:06:22] File done
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0
INFO [2024-12-11 00:06:22] Plate H0309269D01 read; 384 wells
INFO [2024-12-11 00:06:22] File done
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0
INFO [2024-12-11 00:06:22] Plate H0409269D00 read; 384 wells
INFO [2024-12-11 00:06:22] File done
INFO [2024-12-11 00:06:22] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0409269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0509269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0509269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0609269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0609269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0709269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0709269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0809269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0809269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0909269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H0909269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H1109269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H1109269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H1209269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H1209269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H1409269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate H1409269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate K0209269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate K0209269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate K0809269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate K0809269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate K1009269D00 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0
INFO [2024-12-11 00:06:23] Plate K1009269D01 read; 384 wells
INFO [2024-12-11 00:06:23] File done
INFO [2024-12-11 00:06:23] Manifest loaded successfully
INFO [2024-12-11 00:06:23] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:23] Loading Template_7daytreated.xlsx
INFO [2024-12-11 00:06:23] Loading Template_Untreated.xlsx
INFO [2024-12-11 00:06:23] Templates loaded successfully!
INFO [2024-12-11 00:06:23] Manifest loaded successfully
INFO [2024-12-11 00:06:23] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-11 00:06:23] Loading Template_7daytreated.xlsx
INFO [2024-12-11 00:06:23] Loading Template_Untreated.xlsx
INFO [2024-12-11 00:06:23] Templates loaded successfully!
INFO [2024-12-11 00:06:24] Manifest loaded successfully
INFO [2024-12-11 00:06:24] Reading Template_trt.tsv with load_templates_tsv
INFO [2024-12-11 00:06:24] Loading Template_trt.tsv
INFO [2024-12-11 00:06:24] Loading Template_untrt.tsv
INFO [2024-12-11 00:06:24] Templates loaded successfully!
INFO [2024-12-11 00:06:24] Reading file /home/biocbuild/bbs-3.21-bioc/R/site-library/gDRimport/extdata/data5/RawData.tsv
WARN [2024-12-11 00:06:25] Metadata field names for cannot contain spaces --> corrected to: Gnumber
WARN [2024-12-11 00:06:25] Header Gnumber in corrected to Gnumber
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 140 ]
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 140 ]
>
>
> proc.time()
user system elapsed
37.729 1.732 39.251
gDRimport.Rcheck/gDRimport-Ex.timings
| name | user | system | elapsed | |
| check_metadata_names | 0.044 | 0.017 | 0.062 | |
| convert_LEVEL5_prism_to_gDR_input | 0.027 | 0.000 | 0.028 | |
| convert_LEVEL6_prism_to_gDR_input | 0.012 | 0.001 | 0.013 | |
| convert_MAE_to_PSet | 6.550 | 0.262 | 6.813 | |
| convert_pset_to_df | 0.143 | 0.022 | 0.139 | |
| detect_file_format | 0.239 | 0.022 | 0.258 | |
| getPSet | 0.100 | 0.005 | 0.105 | |
| get_exception_data | 0.005 | 0.002 | 0.007 | |
| get_test_D300_data | 0.001 | 0.001 | 0.002 | |
| get_test_EnVision_data | 0.002 | 0.001 | 0.002 | |
| get_test_Tecan_data | 0.000 | 0.001 | 0.001 | |
| get_test_data | 0.002 | 0.000 | 0.003 | |
| get_test_tsv_data | 0.002 | 0.000 | 0.001 | |
| import_D300 | 2.174 | 0.077 | 2.244 | |
| is_readable_v | 0.001 | 0.000 | 0.001 | |
| load_data | 1.032 | 0.042 | 1.072 | |
| load_manifest | 0.039 | 0.005 | 0.038 | |
| load_results | 0.865 | 0.028 | 0.893 | |
| load_templates | 0.173 | 0.009 | 0.175 | |
| manifest_path-method | 0.001 | 0.000 | 0.002 | |
| parse_D300_xml | 0.952 | 0.001 | 0.952 | |
| read_excel_to_dt | 0.020 | 0.001 | 0.017 | |
| result_path-method | 0.002 | 0.000 | 0.002 | |
| setEnvForPSet | 0.001 | 0.000 | 0.000 | |
| standardize_record_values | 0 | 0 | 0 | |
| template_path-method | 0.002 | 0.000 | 0.002 | |