Luigi Marchionni
| Snapshot Date: 2024-12-11 13:40 -0500 (Wed, 11 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/RTopper |
| git_branch: devel |
| git_last_commit: 3a32b4a |
| git_last_commit_date: 2024-10-29 09:38:21 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-12 11:47 -0500 (Thu, 12 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4752 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4464 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4415 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4370 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4279 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1802/2273 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RTopper 1.53.0 (landing page) Luigi Marchionni
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the RTopper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/RTopper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: RTopper |
| Version: 1.53.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data RTopper |
| StartedAt: 2024-12-11 20:56:57 -0000 (Wed, 11 Dec 2024) |
| EndedAt: 2024-12-11 20:57:11 -0000 (Wed, 11 Dec 2024) |
| EllapsedTime: 14.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data RTopper
###
##############################################################################
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* checking for file ‘RTopper/DESCRIPTION’ ... OK
* preparing ‘RTopper’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RTopper.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: ‘generics’
The following objects are masked from ‘package:base’:
as.difftime, as.factor, as.ordered,
intersect, is.element, setdiff,
setequal, union
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce,
anyDuplicated, aperm, append,
as.data.frame, basename, cbind,
colnames, dirname, do.call, duplicated,
eval, evalq, get, grep, grepl,
is.unsorted, lapply, mapply, match,
mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rownames,
sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material;
view with 'browseVignettes()'. To cite
Bioconductor, see 'citation("Biobase")',
and for packages 'citation("pkgname")'.
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:utils’:
findMatches
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Error: package or namespace load failed for ‘AnnotationDbi’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RSQLite/libs/RSQLite.so':
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RSQLite/libs/RSQLite.so)
Error: processing vignette 'RTopper.Rnw' failed with diagnostics:
chunk 4 (label = metaData)
Error : package ‘AnnotationDbi’ could not be loaded
--- failed re-building ‘RTopper.Rnw’
SUMMARY: processing the following file failed:
‘RTopper.Rnw’
Error: Vignette re-building failed.
Execution halted