Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-12 11:44 -0500 (Thu, 12 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4752 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4464 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4415 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4370 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4279 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 928/2273 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Harman 1.35.0 (landing page) Jason Ross
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
To the developers/maintainers of the Harman package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/Harman.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Harman |
Version: 1.35.0 |
Command: rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harman_1.35.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Harman.buildbin-libdir |
StartedAt: 2024-12-12 03:20:58 -0500 (Thu, 12 Dec 2024) |
EndedAt: 2024-12-12 03:21:21 -0500 (Thu, 12 Dec 2024) |
EllapsedTime: 22.7 seconds |
RetCode: 0 |
Status: OK |
PackageFile: Harman_1.35.0.tgz |
PackageFileSize: 2.175 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harman_1.35.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Harman.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Harman.buildbin-libdir Harman_1.35.0.tar.gz' >>>>>>> * installing *source* package ‘Harman’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "Rcpp:::CxxFlags()"` -I. -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c Harman.cpp -o Harman.o In file included from Harman.cpp:182: ./CSelectRandom.h:283:11: warning: variable 'seed' set but not used [-Wunused-but-set-variable] size_t seed ; ^ ./CSelectRandom.h:394:40: warning: unused variable 'it2' [-Wunused-variable] std::vector<double>::iterator it1, it2 ; ^ ./CSelectRandom.h:394:35: warning: unused variable 'it1' [-Wunused-variable] std::vector<double>::iterator it1, it2 ; ^ ./CSelectRandom.h:392:11: warning: unused variable 'currindex' [-Wunused-variable] size_t currindex ; ^ ./CSelectRandom.h:372:11: warning: variable 'seed' set but not used [-Wunused-but-set-variable] size_t seed ; ^ ./CSelectRandom.h:638:25: warning: unused variable 'ts2' [-Wunused-variable] struct timespec ts1, ts2 ; ^ ./CSelectRandom.h:638:20: warning: unused variable 'ts1' [-Wunused-variable] struct timespec ts1, ts2 ; ^ ./CSelectRandom.h:639:11: warning: unused variable 'time1' [-Wunused-variable] double time1, time2 ; ^ ./CSelectRandom.h:639:18: warning: unused variable 'time2' [-Wunused-variable] double time1, time2 ; ^ ./CSelectRandom.h:1019:23: warning: unused variable 'randData2' [-Wunused-variable] size_t randData1, randData2 ; ^ 10 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o Harman.so Harman.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.21-bioc/meat/Harman.buildbin-libdir/00LOCK-Harman/00new/Harman/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Harman) >>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR Harman.buildbin-libdir/Harman/libs/Harman.so >>>>>>> >>>>>>> Paths before fix: Harman.buildbin-libdir/Harman/libs/Harman.so: Harman.so (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.0) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101) /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5) >>>>>>> Fix with install_name_tool: install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libgcc_s.1.1.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libgfortran.5.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libquadmath.0.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so" >>>>>>> Paths after fix: Harman.buildbin-libdir/Harman/libs/Harman.so: Harman.so (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.0) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101) /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)