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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedBladderData
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* checking for file ‘curatedBladderData/DESCRIPTION’ ... OK
* preparing ‘curatedBladderData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
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[] \T1/zi4/m/n/10 Experimenter name: Kim WJ, Kim EJ, Kim SK, Kim YJ et al. Pr
edictive value of progression-related gene classifier in primary non-muscle inv
asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[]
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JL, Baehner F, Mehta K, Devries S, Koppie T, Pejavar S, Carroll P, Waldman FM.
Bladder cancer outcome and subtype classification by gene expression.Clin Cance
r Res. 2005 Jun 1;11(11):4044-55.[]
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sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[]
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r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[]
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l. A candidate molecular biomarker panel for the detection of bladder cancer. C
ancer Epidemiol Biomarkers Prev 2012 Dec;21(12):2149-58.[]
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[] \T1/zi4/m/n/10 Experimenter name: Riester M, Taylor JM, Feifer A, Koppie T
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am improves the prediction of survival in high-risk bladder cancer. Clin Cancer
Res 2012 Mar 1;18(5):1323-33.[]
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t al. Transcriptional signatures of Ral GTPase are associated with aggressive c
linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[]
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d K et al. Emmprin and survivin predict response and survival following cisplat
in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[]
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[] \T1/zi4/m/n/10 Title: Emmprin and survivin predict response and survival f
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[] \T1/zi4/m/n/10 Experimenter name: Dyrskj?t L, Thykjaer T, Kruh?ffer M, Jen
sen JL et al. Identifying distinct classes of bladder carcinoma using microarra
ys. Nat Genet 2003 Jan;33(1):90-6.[]
[24] [25] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
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[] \T1/zi4/m/n/10 Experimenter name: Stransky N, Vallot C, Reyal F, Bernard-P
ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
12.[]
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[] \T1/zi4/m/n/10 Experimenter name: Stransky N, Vallot C, Reyal F, Bernard-P
ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
12.[]
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[] \T1/zi4/m/n/10 Experimenter name: Kim WJ, Kim EJ, Kim SK, Kim YJ et al. Pr
edictive value of progression-related gene classifier in primary non-muscle inv
asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[]
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Bladder cancer outcome and subtype classification by gene expression.Clin Cance
r Res. 2005 Jun 1;11(11):4044-55.[]
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sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[]
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am improves the prediction of survival in high-risk bladder cancer. Clin Cancer
Res 2012 Mar 1;18(5):1323-33.[]
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[] \T1/zi4/m/n/10 Title: Combination of a novel gene expression signature wit
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cancer.[]
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t al. Transcriptional signatures of Ral GTPase are associated with aggressive c
linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[]
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in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[]
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ys. Nat Genet 2003 Jan;33(1):90-6.[]
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, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
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12.[]
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[] \T1/zi4/m/n/10 Experimenter name: Stransky N, Vallot C, Reyal F, Bernard-P
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asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[]
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Bladder cancer outcome and subtype classification by gene expression.Clin Cance
r Res. 2005 Jun 1;11(11):4044-55.[]
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[] \T1/zi4/m/n/10 Experimenter name: Urquidi V, Goodison S, Cai Y, Sun Y et a
l. A candidate molecular biomarker panel for the detection of bladder cancer. C
ancer Epidemiol Biomarkers Prev 2012 Dec;21(12):2149-58.[]
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[] \T1/zi4/m/n/10 Experimenter name: Riester M, Taylor JM, Feifer A, Koppie T
et al. Combination of a novel gene expression signature with a clinical nomogr
am improves the prediction of survival in high-risk bladder cancer. Clin Cancer
Res 2012 Mar 1;18(5):1323-33.[]
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et al. A molecular taxonomy for urothelial carcinoma. Clin Cancer Res 2012 Jun
15;18(12):3377-86.[]
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[] \T1/zi4/m/n/10 Experimenter name: Smith SC, Baras AS, Owens CR, Dancik G e
t al. Transcriptional signatures of Ral GTPase are associated with aggressive c
linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[]
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[] \T1/zi4/m/n/10 Experimenter name: Als AB, Dyrskj?t L, von der Maase H, Koe
d K et al. Emmprin and survivin predict response and survival following cisplat
in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[]
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[] \T1/zi4/m/n/10 Title: Emmprin and survivin predict response and survival f
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ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
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Bladder cancer outcome and subtype classification by gene expression.Clin Cance
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[] \T1/zi4/m/n/10 Title: Combined gene expression and genomic profiling defin
e two intrinsic molecular subtypes of urothelial carcinoma and gene signatures
for molecular grading and outcome.[]
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[] \T1/zi4/m/n/10 Experimenter name: Urquidi V, Goodison S, Cai Y, Sun Y et a
l. A candidate molecular biomarker panel for the detection of bladder cancer. C
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[13] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
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[] \T1/zi4/m/n/10 Experimenter name: Riester M, Taylor JM, Feifer A, Koppie T
et al. Combination of a novel gene expression signature with a clinical nomogr
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[] \T1/zi4/m/n/10 Title: Combination of a novel gene expression signature wit
h a clinical nomogram improves the prediction of survival in high-risk bladder
cancer.[]
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[] \T1/zi4/m/n/10 Experimenter name: Sj?dahl G, Lauss M, L?vgren K, Chebil G
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[] \T1/zi4/m/n/10 Experimenter name: Smith SC, Baras AS, Owens CR, Dancik G e
t al. Transcriptional signatures of Ral GTPase are associated with aggressive c
linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[]
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[] \T1/zi4/m/n/10 Title: Transcriptional signatures of Ral GTPase are associa
ted with aggressive clinicopathologic characteristics in human cancer.[]
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[] \T1/ptm/m/it/10 Emm-prin and sur-vivin pre-dict re-sponse and sur-vival fol-
low-ing
[21]
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[] \T1/zi4/m/n/10 Experimenter name: Als AB, Dyrskj?t L, von der Maase H, Koe
d K et al. Emmprin and survivin predict response and survival following cisplat
in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[]
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[] \T1/zi4/m/n/10 Title: Emmprin and survivin predict response and survival f
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[] \T1/zi4/m/n/10 Experimenter name: Dyrskj?t L, Thykjaer T, Kruh?ffer M, Jen
sen JL et al. Identifying distinct classes of bladder carcinoma using microarra
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[] \T1/zi4/m/n/10 Experimenter name: Stransky N, Vallot C, Reyal F, Bernard-P
ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
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n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
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[] \T1/zi4/m/n/10 Experimenter name: Stransky N, Vallot C, Reyal F, Bernard-P
ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
12.[]
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