Wessel N. van Wieringen
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/sigaR |
| Branch: RELEASE_3_9 |
| Last Commit: e05f46d |
| Last Changed Date: 2019-05-02 11:53:34 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:26:01 -0400 (Wed, 16 Oct 2019).
| Package 1512/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sigaR 1.32.0 Wessel N. van Wieringen
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: sigaR |
| Version: 1.32.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sigaR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings sigaR_1.32.0.tar.gz |
| StartedAt: 2019-10-16 07:05:49 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 07:11:32 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 342.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: sigaR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sigaR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings sigaR_1.32.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/sigaR.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sigaR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sigaR' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sigaR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
'.alphabivariate' '.alphaest' '.pretest'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
mutInfTest 86.31 6.92 93.24
cisEffectTune 12.08 0.00 12.08
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
mutInfTest 60.18 1.22 61.41
cisEffectTune 9.28 0.00 9.28
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/sigaR.Rcheck/00check.log'
for details.
sigaR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sigaR_1.32.0.tar.gz && rm -rf sigaR.buildbin-libdir && mkdir sigaR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sigaR.buildbin-libdir sigaR_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sigaR_1.32.0.zip && rm sigaR_1.32.0.tar.gz sigaR_1.32.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'sigaR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sigaR'
finding HTML links ... done
CNGEheatmaps html
ExpressionSet2order html
finding level-2 HTML links ... done
ExpressionSet2subset html
ExpressionSet2weightedSubset html
RCMestimation html
RCMrandom-method html
RCMrandom html
RCMtest html
cghCall2cghSeg html
cghCall2maximumSubset html
cghCall2order html
cghCall2subset html
cghCall2weightedSubset html
cghSeg2order html
cghSeg2subset html
cghSeg2weightedSubset html
cisEffectPlot html
cisEffectTable html
cisEffectTest html
cisEffectTune html
cisTest-class html
entTest-class html
entropyTest html
expandMatching2singleIDs html
getSegFeatures html
hdEntropy html
hdMI html
matchAnn2Ann html
matchCGHcall2ExpressionSet html
merge2ExpressionSets html
merge2cghCalls html
miTest-class html
mutInfTest html
nBreakpoints html
pathway1sample html
pathway2sample html
pathwayFit-class html
pathwayPlot html
pollackCN16 html
pollackGE16 html
profilesPlot html
rcmFit-class html
rcmTest-class html
sigaR-package html
splitMatchingAtBreakpoints html
summary-method html
uniqGenomicInfo html
z.RCMloss-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sigaR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sigaR' as sigaR_1.32.0.zip
* DONE (sigaR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sigaR' successfully unpacked and MD5 sums checked
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sigaR.Rcheck/examples_i386/sigaR-Ex.timings
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sigaR.Rcheck/examples_x64/sigaR-Ex.timings
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