Package: ramwas

Version: 1.8.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ramwas_1.8.0.tar.gz && rm -rf ramwas.buildbin-libdir && mkdir ramwas.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ramwas.buildbin-libdir ramwas_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ramwas_1.8.0.zip && rm ramwas_1.8.0.tar.gz ramwas_1.8.0.zip

StartedAt: 2019-10-15 21:09:30 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 21:10:39 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 69.8 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ramwas_1.8.0.tar.gz && rm -rf ramwas.buildbin-libdir && mkdir ramwas.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ramwas.buildbin-libdir ramwas_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ramwas_1.8.0.zip && rm ramwas_1.8.0.tar.gz ramwas_1.8.0.zip
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install for i386

* installing *source* package 'ramwas' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c rw_c_code.c -o rw_c_code.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o ramwas.dll tmp.def rw_c_code.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ramwas.buildbin-libdir/00LOCK-ramwas/00new/ramwas/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ramwas'
    finding HTML links ... done
    MakeBED                                 html  
    QCs                                     html  
    RaMWAS                                  html  
    cachedRDSload                           html  
    findBestNpvs                            html  
    get                                     html  
    getCpGset                               html  
    injectSNPsMAF                           html  
    finding level-2 HTML links ... done

    insilicoFASTQ                           html  
    isAbsolutePath                          html  
    makefullpath                            html  
    manhattan                               html  
    mat2cols                                html  
    orthonormalizeCovariates                html  
    parameterDump                           html  
    parameterPreprocess                     html  
    parametersFromFile                      html  
    pipeline                                html  
    plotCV                                  html  
    plotFragmentSizeDistributionEstimate    html  
    plotPC                                  html  
    processCommandLine                      html  
    pvalue2qvalue                           html  
    qqplotFast                              html  
    ramwas0createArtificialData             html  
    ramwasAnnotateLocations                 html  
    ramwasParameters                        html  
    rowcolSumSq                             html  
    rwDataClass-class                       html  
    subsetData                              html  
    testPhenotype                           html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ramwas' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c rw_c_code.c -o rw_c_code.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o ramwas.dll tmp.def rw_c_code.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ramwas.buildbin-libdir/ramwas/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ramwas' as ramwas_1.8.0.zip
* DONE (ramwas)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ramwas' successfully unpacked and MD5 sums checked