Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:36:08 -0400 (Wed, 16 Oct 2019).
Package 1112/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
normr 1.10.0 Johannes Helmuth
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: normr |
Version: 1.10.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/normr_1.10.0.tar.gz && rm -rf normr.buildbin-libdir && mkdir normr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=normr.buildbin-libdir normr_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL normr_1.10.0.zip && rm normr_1.10.0.tar.gz normr_1.10.0.zip |
StartedAt: 2019-10-15 20:23:23 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 20:25:14 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 110.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/normr_1.10.0.tar.gz && rm -rf normr.buildbin-libdir && mkdir normr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=normr.buildbin-libdir normr_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL normr_1.10.0.zip && rm normr_1.10.0.tar.gz normr_1.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2227k 100 2227k 0 0 24.2M 0 --:--:-- --:--:-- --:--:-- 26.2M install for i386 * installing *source* package 'normr' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c em.cpp -o em.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c normr_init.c -o normr_init.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o normr.dll tmp.def RcppExports.o em.o normr_init.o -fopenmp -D_GLIBCXX_USE_C99 -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr' Creating a new generic function for 'getClasses' in package 'normr' ** help *** installing help indices converting help for package 'normr' finding HTML links ... done NormRCountConfig-class html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYHjeHl/R.INSTALL18a45c2616/normr/man/NormRCountConfig-class.Rd:73: file link 'bamProfile' in package 'bamsignals' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYHjeHl/R.INSTALL18a45c2616/normr/man/NormRCountConfig-class.Rd:86: file link 'bamProfile' in package 'bamsignals' does not exist and so has been treated as a topic NormRFit-class html normR-diffR html finding level-2 HTML links ... done normR-enrichR html normR-regimeR html normR html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr' ** testing if installed package can be loaded from final location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'normr' ... ** libs C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c em.cpp -o em.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c normr_init.c -o normr_init.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o normr.dll tmp.def RcppExports.o em.o normr_init.o -fopenmp -D_GLIBCXX_USE_C99 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/normr.buildbin-libdir/normr/libs/x64 ** testing if installed package can be loaded Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr' * MD5 sums packaged installation of 'normr' as normr_1.10.0.zip * DONE (normr) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'normr' successfully unpacked and MD5 sums checked