Thuc Duy Le
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/miRLAB |
| Branch: RELEASE_3_9 |
| Last Commit: 0f05df0 |
| Last Changed Date: 2019-07-14 20:41:43 -0400 (Sun, 14 Jul 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:56:03 -0400 (Wed, 16 Oct 2019).
| Package 1011/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| miRLAB 1.14.3 Thuc Duy Le
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: miRLAB |
| Version: 1.14.3 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:miRLAB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings miRLAB_1.14.3.tar.gz |
| StartedAt: 2019-10-16 04:41:49 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 04:49:20 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 451.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: miRLAB.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:miRLAB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings miRLAB_1.14.3.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/miRLAB.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘miRLAB/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘miRLAB’ version ‘1.14.3’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘miRLAB’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
miRLAB.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL miRLAB ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘miRLAB’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miRLAB)
miRLAB.Rcheck/tests/runTests.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("miRLAB")
Loading required package: amap
RUNIT TEST PROTOCOL -- Wed Oct 16 04:49:13 2019
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
miRLAB RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
20.121 1.817 21.890
miRLAB.Rcheck/miRLAB-Ex.timings
| name | user | system | elapsed | |
| Borda | 0.256 | 0.008 | 0.265 | |
| BordaTopk | 0.055 | 0.001 | 0.056 | |
| Dcov | 0.041 | 0.015 | 0.056 | |
| Elastic | 0.092 | 0.002 | 0.094 | |
| Extopk | 0.014 | 0.001 | 0.015 | |
| GOBPenrichment | 0.001 | 0.000 | 0.001 | |
| Hoeffding | 0.044 | 0.004 | 0.048 | |
| IDA | 0.313 | 0.025 | 0.338 | |
| ImputeNormData | 0.015 | 0.001 | 0.016 | |
| KEGGenrichment | 0.000 | 0.000 | 0.001 | |
| Kendall | 0.015 | 0.001 | 0.015 | |
| Lasso | 0.054 | 0.000 | 0.055 | |
| MI | 0.121 | 0.004 | 0.125 | |
| Pearson | 0.012 | 0.000 | 0.012 | |
| ProMISe | 0.020 | 0.001 | 0.021 | |
| RDC | 0.153 | 0.013 | 0.166 | |
| Read | 0.005 | 0.001 | 0.006 | |
| ReadExtResult | 0.001 | 0.001 | 0.000 | |
| Spearman | 0.014 | 0.001 | 0.016 | |
| Standardise | 0 | 0 | 0 | |
| ValidateAll | 0.001 | 0.000 | 0.000 | |
| Validation | 0.025 | 0.003 | 0.027 | |
| ValidationT | 0.001 | 0.001 | 0.001 | |
| Zscore | 0.017 | 0.001 | 0.019 | |
| bRank | 0.017 | 0.001 | 0.018 | |
| convert | 0.022 | 0.002 | 0.026 | |
| filterAndCompare | 0.000 | 0.000 | 0.001 | |
| readHeader | 0.006 | 0.001 | 0.007 | |