Alejandro Caceres
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/inveRsion |
| Branch: RELEASE_3_9 |
| Last Commit: 2bc6b77 |
| Last Changed Date: 2019-05-02 11:53:22 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:24:49 -0400 (Wed, 16 Oct 2019).
| Package 825/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| inveRsion 1.32.0 Alejandro Caceres
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: inveRsion |
| Version: 1.32.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/inveRsion_1.32.0.tar.gz && rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=inveRsion.buildbin-libdir inveRsion_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL inveRsion_1.32.0.zip && rm inveRsion_1.32.0.tar.gz inveRsion_1.32.0.zip |
| StartedAt: 2019-10-15 19:39:01 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:40:35 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 94.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/inveRsion_1.32.0.tar.gz && rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=inveRsion.buildbin-libdir inveRsion_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL inveRsion_1.32.0.zip && rm inveRsion_1.32.0.tar.gz inveRsion_1.32.0.zip
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install for i386
* installing *source* package 'inveRsion' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init_inveRsion.c -o init_inveRsion.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c inversionModel.c -o inversionModel.o
inversionModel.c: In function 'blockAndLev':
inversionModel.c:185:31: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if(dat[(*nr)*(c1)+row]==levelleft[level] & dat[(*nr)*(c2)+row]==levelright[level])
^
inversionModel.c: In function 'inversionModel':
inversionModel.c:360:15: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(steps<*maxSteps & tol>mintol)
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c writeGenoDat.c -o writeGenoDat.o
writeGenoDat.c: In function 'writeGenoDat':
writeGenoDat.c:34:16: warning: 'dat' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i,j,l,k,dat,nomiss[*numlevcaco],sum[*numlevcaco];
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o inveRsion.dll tmp.def init_inveRsion.o inversionModel.o writeGenoDat.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/inveRsion.buildbin-libdir/00LOCK-inveRsion/00new/inveRsion/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'inveRsion'
finding HTML links ... done
GenoDat-class html
GenoDatROI-class html
HaploCode-class html
ac html
accBic html
accuracy-class html
codeHaplo html
gDat html
getClassif-methods html
getInv-methods html
getROIs-methods html
hapCode html
invList html
inveRsion-internal html
inveRsion-package html
inversion-class html
inversionList-class html
listInv-methods html
scan-class html
scanInv html
scanRes html
setUpGenoDatFile html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'inveRsion' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init_inveRsion.c -o init_inveRsion.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c inversionModel.c -o inversionModel.o
inversionModel.c: In function 'blockAndLev':
inversionModel.c:185:31: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if(dat[(*nr)*(c1)+row]==levelleft[level] & dat[(*nr)*(c2)+row]==levelright[level])
^
inversionModel.c: In function 'inversionModel':
inversionModel.c:360:15: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(steps<*maxSteps & tol>mintol)
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c writeGenoDat.c -o writeGenoDat.o
writeGenoDat.c: In function 'writeGenoDat':
writeGenoDat.c:34:16: warning: 'dat' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i,j,l,k,dat,nomiss[*numlevcaco],sum[*numlevcaco];
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o inveRsion.dll tmp.def init_inveRsion.o inversionModel.o writeGenoDat.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/inveRsion.buildbin-libdir/inveRsion/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'inveRsion' as inveRsion_1.32.0.zip
* DONE (inveRsion)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'inveRsion' successfully unpacked and MD5 sums checked