Back to Multiple platform build/check report for BioC 3.9
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

BUILD BIN report for iBBiG on celaya2

This page was generated on 2019-10-16 12:50:03 -0400 (Wed, 16 Oct 2019).

Package 782/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iBBiG 1.28.0
Aedin Culhane
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/iBBiG
Branch: RELEASE_3_9
Last Commit: 69ee95b
Last Changed Date: 2019-05-02 11:53:35 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: iBBiG
Version: 1.28.0
Command: rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iBBiG_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iBBiG.buildbin-libdir
StartedAt: 2019-10-16 08:46:45 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 08:47:13 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 27.9 seconds
RetCode: 0
Status:  OK 
PackageFile: iBBiG_1.28.0.tgz
PackageFileSize: 1.038 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iBBiG_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iBBiG.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iBBiG.buildbin-libdir iBBiG_1.28.0.tar.gz'
>>>>>>> 

* installing *source* package ‘iBBiG’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c R_init_iBBiG.c -o R_init_iBBiG.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c iBBiG.c -o iBBiG.o
iBBiG.c:300:22: warning: implicit declaration of function 'time' is invalid in C99 [-Wimplicit-function-declaration]
     srand((unsigned)time(NULL));               
                     ^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iBBiG.so R_init_iBBiG.o iBBiG.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/iBBiG.buildbin-libdir/00LOCK-iBBiG/00new/iBBiG/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iBBiG)


>>>>>>> 
>>>>>>> FIXING LINKS FOR iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"