Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:50:03 -0400 (Wed, 16 Oct 2019).
Package 782/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
iBBiG 1.28.0 Aedin Culhane
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
Package: iBBiG |
Version: 1.28.0 |
Command: rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iBBiG_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iBBiG.buildbin-libdir |
StartedAt: 2019-10-16 08:46:45 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 08:47:13 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 27.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: iBBiG_1.28.0.tgz |
PackageFileSize: 1.038 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iBBiG_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iBBiG.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iBBiG.buildbin-libdir iBBiG_1.28.0.tar.gz' >>>>>>> * installing *source* package ‘iBBiG’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_iBBiG.c -o R_init_iBBiG.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c iBBiG.c -o iBBiG.o iBBiG.c:300:22: warning: implicit declaration of function 'time' is invalid in C99 [-Wimplicit-function-declaration] srand((unsigned)time(NULL)); ^ 1 warning generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iBBiG.so R_init_iBBiG.o iBBiG.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/iBBiG.buildbin-libdir/00LOCK-iBBiG/00new/iBBiG/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iBBiG) >>>>>>> >>>>>>> FIXING LINKS FOR iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"