Package: ecolitk

Version: 1.56.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ecolitk.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ecolitk_1.56.0.tar.gz

StartedAt: 2019-10-16 03:26:42 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 03:27:39 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 57.2 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ecolitk.Rcheck

Warnings: 1

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ecolitk.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ecolitk_1.56.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/ecolitk.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ecolitk/DESCRIPTION' ... OK
* this is package 'ecolitk' version '1.56.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ecolitk' can be installed ... WARNING
Found the following significant warnings:
  Note: possible error in 'strsplit(line, "\t", ': unused argument (extended = TRUE) 
See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/ecolitk.Rcheck/00install.out' for details.
Information on the location(s) of code generating the 'Note's can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to 'yes'.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'graph' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.buildGENEPRODFUN: possible error in strsplit(line, "\t", extended =
  TRUE): unused argument (extended = TRUE)
* checking Rd files ... NOTE
prepare_Rd: multiFun.Rd:16-18: Dropping empty section \details
prepare_Rd: polar2xy.Rd:28-33: Dropping empty section \value
prepare_Rd: polygonChrom.Rd:59: Dropping empty section \seealso
prepare_Rd: wstringapply.Rd:24-25: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/ecolitk.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ecolitk_1.56.0.tar.gz && rm -rf ecolitk.buildbin-libdir && mkdir ecolitk.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ecolitk.buildbin-libdir ecolitk_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ecolitk_1.56.0.zip && rm ecolitk_1.56.0.tar.gz ecolitk_1.56.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1558k  100 1558k    0     0  8898k      0 --:--:-- --:--:-- --:--:-- 9274k

install for i386

* installing *source* package 'ecolitk' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Note: possible error in 'strsplit(line, "\t", ': unused argument (extended = TRUE) 
** help
*** installing help indices
  converting help for package 'ecolitk'
    finding HTML links ... done
    ecoli.data                              html  
    ecoligenome.operon                      html  
    ecoligenomeBNUM                         html  
    ecoligenomeBNUM2MULTIFUN                html  
    gccontent                               html  
    linkedmultiget                          html  
    multiFun                                html  
    pointsCircle                            html  
    polar2xy                                html  
    polygonChrom                            html  
    wstringapply                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ecolitk' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ecolitk' as ecolitk_1.56.0.zip
* DONE (ecolitk)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ecolitk' successfully unpacked and MD5 sums checked