Package: dks

Version: 1.30.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:dks.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings dks_1.30.0.tar.gz

StartedAt: 2019-10-16 03:17:30 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 03:18:24 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 54.2 seconds

RetCode: 0

Status:  OK

CheckDir: dks.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:dks.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings dks_1.30.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/dks.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'dks/DESCRIPTION' ... OK
* this is package 'dks' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'dks' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
cdfplot: no visible global function definition for 'segments'
dks: no visible global function definition for 'par'
dks: no visible global function definition for 'lines'
dks: no visible global function definition for 'abline'
dks: no visible global function definition for 'hist'
dks.pvalue : : no visible global function definition for
  'ks.test'
dks.pvalue: no visible global function definition for 'ks.test'
qksone: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  abline hist ks.test lines par segments uniroot
Consider adding
  importFrom("graphics", "abline", "hist", "lines", "par", "segments")
  importFrom("stats", "ks.test", "uniroot")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
    user system elapsed
dks 9.01      0    9.01
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
     user system elapsed
dks 11.56   0.02   11.58
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/dks.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/dks_1.30.0.tar.gz && rm -rf dks.buildbin-libdir && mkdir dks.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dks.buildbin-libdir dks_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL dks_1.30.0.zip && rm dks_1.30.0.tar.gz dks_1.30.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  116k  100  116k    0     0   783k      0 --:--:-- --:--:-- --:--:--  821k

install for i386

* installing *source* package 'dks' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'dks'
    finding HTML links ... done
    P                                       html  
    cred.set                                html  
    dks                                     html  
    dks.pvalue                              html  
    dksdata                                 html  
    pprob.dist                              html  
    pprob.uniform                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'dks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'dks' as dks_1.30.0.zip
* DONE (dks)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'dks' successfully unpacked and MD5 sums checked