Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:32:43 -0400 (Wed, 16 Oct 2019).
Package 102/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
bamsignals 1.16.0 Alessandro Mammana
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: bamsignals |
Version: 1.16.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/bamsignals_1.16.0.tar.gz && rm -rf bamsignals.buildbin-libdir && mkdir bamsignals.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bamsignals.buildbin-libdir bamsignals_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL bamsignals_1.16.0.zip && rm bamsignals_1.16.0.tar.gz bamsignals_1.16.0.zip |
StartedAt: 2019-10-15 19:58:42 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 19:59:53 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 70.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/bamsignals_1.16.0.tar.gz && rm -rf bamsignals.buildbin-libdir && mkdir bamsignals.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bamsignals.buildbin-libdir bamsignals_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL bamsignals_1.16.0.zip && rm bamsignals_1.16.0.tar.gz bamsignals_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2367k 100 2367k 0 0 4397k 0 --:--:-- --:--:-- --:--:-- 4449k install for i386 * installing *source* package 'bamsignals' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CountSignals.cpp -o CountSignals.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c bamsignals.cpp -o bamsignals.o bamsignals.cpp: In function 'bool writeSamAsBamAndIndex(const string&, const string&)': bamsignals.cpp:516:31: warning: ignoring return value of 'int sam_hdr_write(samFile*, const bam_hdr_t*)', declared with attribute warn_unused_result [-Wunused-result] sam_hdr_write(out, header); ^ bamsignals.cpp:521:36: warning: ignoring return value of 'int bam_write1(BGZF*, const bam1_t*)', declared with attribute warn_unused_result [-Wunused-result] bam_write1(out->fp.bgzf, b); // write the alignment to `out' ^ bamsignals.cpp:530:40: warning: ignoring return value of 'int sam_index_build(const char*, int)', declared with attribute warn_unused_result [-Wunused-result] bam_index_build(bampath.c_str(), 0); ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bamsignals_init.c -o bamsignals_init.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o bamsignals.dll tmp.def CountSignals.o RcppExports.o bamsignals.o bamsignals_init.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/usrlib/i386 -lhts -lz -lm -lws2_32 -lpthread -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/bamsignals.buildbin-libdir/00LOCK-bamsignals/00new/bamsignals/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bamsignals' finding HTML links ... done CountSignals-class html as.list.CountSignals html bamsignals-methods html bamsignals html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'bamsignals' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CountSignals.cpp -o CountSignals.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c bamsignals.cpp -o bamsignals.o bamsignals.cpp: In function 'bool writeSamAsBamAndIndex(const string&, const string&)': bamsignals.cpp:516:31: warning: ignoring return value of 'int sam_hdr_write(samFile*, const bam_hdr_t*)', declared with attribute warn_unused_result [-Wunused-result] sam_hdr_write(out, header); ^ bamsignals.cpp:521:36: warning: ignoring return value of 'int bam_write1(BGZF*, const bam1_t*)', declared with attribute warn_unused_result [-Wunused-result] bam_write1(out->fp.bgzf, b); // write the alignment to `out' ^ bamsignals.cpp:530:40: warning: ignoring return value of 'int sam_index_build(const char*, int)', declared with attribute warn_unused_result [-Wunused-result] bam_index_build(bampath.c_str(), 0); ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bamsignals_init.c -o bamsignals_init.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o bamsignals.dll tmp.def CountSignals.o RcppExports.o bamsignals.o bamsignals_init.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/usrlib/x64 -lhts -lz -lm -lws2_32 -lpthread -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/bamsignals.buildbin-libdir/bamsignals/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'bamsignals' as bamsignals_1.16.0.zip * DONE (bamsignals) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'bamsignals' successfully unpacked and MD5 sums checked