Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:09:50 -0400 (Wed, 16 Oct 2019).
Package 51/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
anamiR 1.12.0 Ti-Tai Wang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: anamiR |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:anamiR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings anamiR_1.12.0.tar.gz |
StartedAt: 2019-10-15 23:43:16 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-16 00:03:28 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 1212.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: anamiR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:anamiR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings anamiR_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/anamiR.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘anamiR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘anamiR’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘anamiR’ can be installed ... OK * checking installed package size ... NOTE installed size is 21.5Mb sub-directories of 1Mb or more: data 1.8Mb extdata 19.6Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE GSEA_ana: no visible binding for global variable ‘msigdb.gs’ Undefined global functions or variables: msigdb.gs * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed GSEA_res 9.915 0.187 222.239 enrichment 5.584 0.655 630.416 heat_vis 1.747 0.012 7.830 database_support 1.348 0.004 37.392 miR_converter 0.321 0.008 6.285 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/anamiR.Rcheck/00check.log’ for details.
anamiR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL anamiR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘anamiR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anamiR)
anamiR.Rcheck/anamiR-Ex.timings
name | user | system | elapsed | |
GSEA_ana | 1.656 | 0.020 | 1.975 | |
GSEA_res | 9.915 | 0.187 | 222.239 | |
database_support | 1.348 | 0.004 | 37.392 | |
differExp_continuous | 0.325 | 0.007 | 0.333 | |
differExp_discrete | 0.32 | 0.00 | 0.32 | |
enrichment | 5.584 | 0.655 | 630.416 | |
heat_vis | 1.747 | 0.012 | 7.830 | |
miR_converter | 0.321 | 0.008 | 6.285 | |
multi_Differ | 0.973 | 0.024 | 0.997 | |
negative_cor | 0.976 | 0.020 | 1.003 | |
normalization | 0.011 | 0.000 | 0.011 | |