Package: alpine

Version: 1.10.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/alpine_1.10.0.tar.gz && rm -rf alpine.buildbin-libdir && mkdir alpine.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=alpine.buildbin-libdir alpine_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL alpine_1.10.0.zip && rm alpine_1.10.0.tar.gz alpine_1.10.0.zip

StartedAt: 2019-10-15 20:23:57 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 20:25:10 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 73.0 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/alpine_1.10.0.tar.gz && rm -rf alpine.buildbin-libdir && mkdir alpine.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=alpine.buildbin-libdir alpine_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL alpine_1.10.0.zip && rm alpine_1.10.0.tar.gz alpine_1.10.0.zip
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install for i386

* installing *source* package 'alpine' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'alpine'
    finding HTML links ... done
    alpine-package                          html  
    buildFragtypes                          html  
    estimateAbundance                       html  
    extractAlpine                           html  
    fitBiasModels                           html  
    getFragmentWidths                       html  
    getReadLength                           html  
    mergeGenes                              html  
    normalizeDESeq                          html  
    plotFragLen                             html  
    plotGC                                  html  
    plotGRL                                 html  
    plotOrder0                              html  
    plotRelPos                              html  
    predictCoverage                         html  
    preprocessedData                        html  
    splitGenesAcrossChroms                  html  
    splitLongGenes                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'alpine' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'alpine' as alpine_1.10.0.zip
* DONE (alpine)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'alpine' successfully unpacked and MD5 sums checked