Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:16:49 -0400 (Wed, 16 Oct 2019).
Package 1648/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TimeSeriesExperiment 1.2.0 Lan Huong Nguyen
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: TimeSeriesExperiment |
Version: 1.2.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:TimeSeriesExperiment.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings TimeSeriesExperiment_1.2.0.tar.gz |
StartedAt: 2019-10-16 05:26:46 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 05:30:46 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 239.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TimeSeriesExperiment.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:TimeSeriesExperiment.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings TimeSeriesExperiment_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/TimeSeriesExperiment.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TimeSeriesExperiment/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TimeSeriesExperiment’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TimeSeriesExperiment’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘S4Vectors:::selectSome’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE clusterTimeSeries: no visible binding for global variable ‘freq’ clusterTimeSeries: no visible binding for global variable ‘.’ Undefined global functions or variables: . freq * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed differentialExpression 10.772 0.004 10.784 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/TimeSeriesExperiment.Rcheck/00check.log’ for details.
TimeSeriesExperiment.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL TimeSeriesExperiment ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘TimeSeriesExperiment’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TimeSeriesExperiment)
TimeSeriesExperiment.Rcheck/TimeSeriesExperiment-Ex.timings
name | user | system | elapsed | |
TimeSeriesExperiment | 0.208 | 0.008 | 0.216 | |
addLags | 0.277 | 0.008 | 0.285 | |
clusterAssignment | 0.318 | 0.000 | 0.318 | |
clusterData | 0.548 | 0.004 | 0.552 | |
clusterTimeSeries | 0.401 | 0.000 | 0.401 | |
colData | 0.042 | 0.000 | 0.043 | |
collapseReplicates | 0.085 | 0.012 | 0.097 | |
collapsed-data | 0.165 | 0.008 | 0.173 | |
dataToTimeSeries | 0.016 | 0.000 | 0.016 | |
differentialExpression | 10.772 | 0.004 | 10.784 | |
dimensionReduction | 0.064 | 0.000 | 0.064 | |
filterFeatures | 0.047 | 0.000 | 0.046 | |
groups | 0.019 | 0.000 | 0.019 | |
makeTimeSeries | 0.168 | 0.000 | 0.169 | |
makeTimeSeriesExperimentFromExpressionSet | 0.002 | 0.000 | 0.001 | |
makeTimeSeriesExperimentFromSummarizedExperiment | 0.183 | 0.000 | 0.184 | |
meltMatrix | 0.009 | 0.000 | 0.008 | |
normalizeData | 0.046 | 0.000 | 0.047 | |
pathwayEnrichment | 0.972 | 0.020 | 1.455 | |
pipe | 0.000 | 0.000 | 0.001 | |
plotEnrichment | 0.858 | 0.008 | 0.866 | |
plotHeatmap | 0.032 | 0.004 | 0.036 | |
plotSamplePCA | 0.439 | 0.016 | 0.455 | |
plotTimeSeries | 2.536 | 0.024 | 2.561 | |
plotTimeSeriesClusters | 2.265 | 0.020 | 2.286 | |
plotTimeSeriesPCA | 2.925 | 0.128 | 3.055 | |
replicates | 0.018 | 0.000 | 0.018 | |
rowData | 0.029 | 0.000 | 0.029 | |
row_and_colnames | 0.005 | 0.004 | 0.009 | |
runPCA | 0.035 | 0.000 | 0.035 | |
timeSeries | 0.336 | 0.064 | 0.399 | |
timepointDE | 0.070 | 0.006 | 0.076 | |
timepoints | 0.020 | 0.001 | 0.021 | |
trajectoryDE | 0.12 | 0.00 | 0.12 | |
varianceStabilization | 0.003 | 0.000 | 0.003 | |