Multiple platform build/check report for BioC 3.9 - INSTALL report for TSSi on tokay2

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TSSi_1.30.0.tar.gz && rm -rf TSSi.buildbin-libdir && mkdir TSSi.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TSSi.buildbin-libdir TSSi_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TSSi_1.30.0.zip && rm TSSi_1.30.0.tar.gz TSSi_1.30.0.zip
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install for i386

* installing *source* package 'TSSi' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c assess.c -o assess.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o TSSi.dll tmp.def assess.o init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/TSSi.buildbin-libdir/00LOCK-TSSi/00new/TSSi/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'segments' in package 'TSSi'
** help
*** installing help indices
  converting help for package 'TSSi'
    finding HTML links ... done
    TSSi-package                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TSSi-package.Rd:54: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TSSi-package.Rd:54: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TSSi-package.Rd:55: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TSSi-package.Rd:66: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    TssData-class                           html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssData-class.Rd:144: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssData-class.Rd:144: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssData-class.Rd:145: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssData-class.Rd:152: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    TssNorm-class                           html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssNorm-class.Rd:74: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssNorm-class.Rd:74: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssNorm-class.Rd:75: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssNorm-class.Rd:82: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    TssResult-class                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssResult-class.Rd:86: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssResult-class.Rd:86: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssResult-class.Rd:87: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/TssResult-class.Rd:94: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    asRangedData-methods                    html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/asRangedData-methods.Rd:89: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/asRangedData-methods.Rd:89: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/asRangedData-methods.Rd:90: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/asRangedData-methods.Rd:97: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    get-methods                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/get-methods.Rd:160: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/get-methods.Rd:160: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/get-methods.Rd:161: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/get-methods.Rd:168: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    identify-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/identify-methods.Rd:101: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/identify-methods.Rd:101: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/identify-methods.Rd:102: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/identify-methods.Rd:109: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    normalize-methods                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/normalize-methods.Rd:112: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/normalize-methods.Rd:112: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/normalize-methods.Rd:113: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/normalize-methods.Rd:120: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    physcoCounts-data                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/physcoCounts-data.Rd:49: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/physcoCounts-data.Rd:49: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/physcoCounts-data.Rd:50: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/physcoCounts-data.Rd:57: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    plot-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/plot-methods.Rd:154: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/plot-methods.Rd:154: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/plot-methods.Rd:155: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/plot-methods.Rd:162: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    segmentize-methods                      html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/segmentize-methods.Rd:91: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/segmentize-methods.Rd:91: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/segmentize-methods.Rd:92: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/segmentize-methods.Rd:99: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
    subtract-functions                      html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/subtract-functions.Rd:50: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/subtract-functions.Rd:50: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/subtract-functions.Rd:51: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpO4CV9n/R.INSTALL13604f7f11d7/TSSi/man/subtract-functions.Rd:58: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'TSSi' is deprecated and will be removed from Bioconductor
  version 3.10
** testing if installed package can be loaded from final location
Warning: Package 'TSSi' is deprecated and will be removed from Bioconductor
  version 3.10
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TSSi' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c assess.c -o assess.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o TSSi.dll tmp.def assess.o init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/TSSi.buildbin-libdir/TSSi/libs/x64
** testing if installed package can be loaded
Warning: Package 'TSSi' is deprecated and will be removed from Bioconductor
  version 3.10
* MD5 sums
packaged installation of 'TSSi' as TSSi_1.30.0.zip
* DONE (TSSi)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'TSSi' successfully unpacked and MD5 sums checked
INSTALL report for TSSi on tokay2

Summary

Command output
