Luca De Sano
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/TRONCO |
| Branch: RELEASE_3_9 |
| Last Commit: 9a7b949 |
| Last Changed Date: 2019-06-29 05:23:54 -0400 (Sat, 29 Jun 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:32:14 -0400 (Wed, 16 Oct 2019).
| Package 1682/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TRONCO 2.16.2 Luca De Sano
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TRONCO |
| Version: 2.16.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TRONCO_2.16.2.tar.gz && rm -rf TRONCO.buildbin-libdir && mkdir TRONCO.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TRONCO.buildbin-libdir TRONCO_2.16.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TRONCO_2.16.2.zip && rm TRONCO_2.16.2.tar.gz TRONCO_2.16.2.zip |
| StartedAt: 2019-10-15 19:50:18 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:51:51 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 93.4 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TRONCO_2.16.2.tar.gz && rm -rf TRONCO.buildbin-libdir && mkdir TRONCO.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TRONCO.buildbin-libdir TRONCO_2.16.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TRONCO_2.16.2.zip && rm TRONCO_2.16.2.tar.gz TRONCO_2.16.2.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 254k 100 254k 0 0 3706k 0 --:--:-- --:--:-- --:--:-- 4169k
install for i386
* installing *source* package 'TRONCO' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TRONCO'
finding HTML links ... done
AND html
OR html
TCGA.map.clinical.data html
TCGA.multiple.samples html
TCGA.remove.multiple.samples html
TCGA.shorten.barcodes html
XOR html
aCML html
annotate.description html
annotate.stages html
as.adj.matrix html
as.alterations html
as.bootstrap.scores html
as.colors html
as.conditional.probs html
as.confidence html
as.description html
as.events html
as.events.in.patterns html
as.events.in.sample html
as.gene html
as.genes html
as.genes.in.patterns html
as.genotypes html
as.hypotheses html
as.joint.probs html
as.kfold.eloss html
as.kfold.posterr html
as.kfold.prederr html
as.marginal.probs html
as.models html
as.parameters html
as.pathway html
as.patterns html
as.samples html
as.selective.advantage.relations html
as.stages html
as.types html
as.types.in.patterns html
cbio.query html
change.color html
consolidate.data html
crc_gistic html
crc_maf html
crc_plain html
delete.event html
delete.gene html
delete.hypothesis html
delete.model html
delete.pattern html
delete.samples html
delete.type html
duplicates html
ebind html
enforce.numeric html
enforce.string html
events.selection html
export.graphml html
export.mutex html
export.nbs.input html
extract.MAF.HuGO.Entrez.map html
genes.table.report html
has.duplicates html
has.model html
has.stages html
hypothesis.add html
hypothesis.add.group html
hypothesis.add.homologous html
import.GISTIC html
import.MAF html
import.genotypes html
import.model html
import.mutex.groups html
intersect.datasets html
is.compliant html
join.events html
join.types html
keysToNames html
maf html
muts html
nameToKey html
nevents html
ngenes html
nhypotheses html
npatterns html
nsamples html
ntypes html
oncoprint html
oncoprint.cbio html
order.frequency html
pathway.visualization html
pheatmap html
rank.recurrents html
rename.gene html
rename.type html
samples.selection html
sbind html
ssplit html
stage html
test_dataset html
test_dataset_no_hypos html
test_model html
test_model_kfold html
trim html
tronco.bootstrap html
tronco.caprese html
tronco.capri html
tronco.chowliu html
tronco.edmonds html
tronco.gabow html
tronco.kfold.eloss html
tronco.kfold.posterr html
tronco.kfold.prederr html
tronco.pattern.plot html
tronco.plot html
tronco.prim html
view html
which.samples html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TRONCO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TRONCO' as TRONCO_2.16.2.zip
* DONE (TRONCO)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'TRONCO' successfully unpacked and MD5 sums checked