Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

INSTALL report for TNBC.CMS on tokay2

This page was generated on 2019-10-16 12:43:52 -0400 (Wed, 16 Oct 2019).

Package 1654/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TNBC.CMS 1.0.0
Doyeong Yu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/TNBC.CMS
Branch: RELEASE_3_9
Last Commit: 7393b2c
Last Changed Date: 2019-05-02 11:54:15 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TNBC.CMS
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TNBC.CMS_1.0.0.tar.gz && rm -rf TNBC.CMS.buildbin-libdir && mkdir TNBC.CMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TNBC.CMS.buildbin-libdir TNBC.CMS_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TNBC.CMS_1.0.0.zip && rm TNBC.CMS_1.0.0.tar.gz TNBC.CMS_1.0.0.zip
StartedAt: 2019-10-15 20:54:32 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:55:40 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 68.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TNBC.CMS_1.0.0.tar.gz && rm -rf TNBC.CMS.buildbin-libdir && mkdir TNBC.CMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TNBC.CMS.buildbin-libdir TNBC.CMS_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TNBC.CMS_1.0.0.zip && rm TNBC.CMS_1.0.0.tar.gz TNBC.CMS_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2725k  100 2725k    0     0  27.7M      0 --:--:-- --:--:-- --:--:-- 29.9M

install for i386

* installing *source* package 'TNBC.CMS' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TNBC.CMS'
    finding HTML links ... done
    GSE25055                                html  
    computeDS                               html  
    computeESTIMATEscore                    html  
    computeGES                              html  
    computexCellScore                       html  
    performGSVA                             html  
    plotHR                                  html  
    plotKM                                  html  
    predictCMS                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TNBC.CMS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TNBC.CMS' as TNBC.CMS_1.0.0.zip
* DONE (TNBC.CMS)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'TNBC.CMS' successfully unpacked and MD5 sums checked