Multiple platform build/check report for BioC 3.9 - CHECK report for SigFuge on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SigFuge.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SigFuge_1.22.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/SigFuge.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SigFuge/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SigFuge’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SigFuge’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
SFfigure: no visible binding for global variable ‘base’
SFfigure: no visible binding for global variable ‘s’
SFfigure: no visible binding for global variable ‘e’
SFfigure: no visible global function definition for ‘rgb’
SFfigure: no visible global function definition for ‘hcl’
SFfigure: no visible binding for global variable ‘cluster’
SFfigure: no visible binding for global variable ‘median’
SFfigure: no visible binding for global variable ‘x’
SFfigure: no visible binding for global variable ‘y1’
SFfigure: no visible binding for global variable ‘label’
SFfigure: no visible binding for global variable ‘value’
SFfigure: no visible binding for global variable ‘Clusters’
SFfigure: no visible binding for global variable ‘y2’
SFfigure: no visible global function definition for ‘pdf’
SFfigure: no visible global function definition for ‘dev.off’
SFlabels: no visible global function definition for ‘kmeans’
SFnormalize : : no visible global function definition for
  ‘median’
Undefined global functions or variables:
  Clusters base cluster dev.off e hcl kmeans label median pdf rgb s
  value x y1 y2
Consider adding
  importFrom("grDevices", "dev.off", "hcl", "pdf", "rgb")
  importFrom("stats", "kmeans", "median")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
SFfigure 29.278  2.038  32.001
SFpval   17.280  1.486  19.512
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/SigFuge.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SigFuge
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘SigFuge’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SigFuge)

CHECK report for SigFuge on celaya2

Summary

Command output

Installation output

Tests output

Example timings

name	user	system	elapsed
SFfigure	29.278	2.038	32.001
SFlabels	2.205	0.147	2.499
SFnormalize	0.237	0.050	0.305
SFpval	17.280	1.486	19.512