Claudio Isella
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/Mulcom |
| Branch: RELEASE_3_9 |
| Last Commit: f95b4a7 |
| Last Changed Date: 2019-09-12 07:54:14 -0400 (Thu, 12 Sep 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 11:58:50 -0400 (Wed, 16 Oct 2019).
| Package 1063/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Mulcom 1.34.1 Claudio Isella
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ WARNINGS ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: Mulcom |
| Version: 1.34.1 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:Mulcom.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings Mulcom_1.34.1.tar.gz |
| StartedAt: 2019-10-16 03:24:57 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 03:25:58 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 61.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: Mulcom.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:Mulcom.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings Mulcom_1.34.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/Mulcom.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Mulcom/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Mulcom’ version ‘1.34.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Mulcom’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘Mulcom.Rmd’
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
mulInt 5.492 0.008 5.501
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.9-bioc/meat/Mulcom.Rcheck/00check.log’
for details.
Mulcom.Rcheck/00install.out
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL Mulcom
###
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘Mulcom’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function ‘void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)’:
mulLibs.cc:708:33: warning: statement has no effect [-Wunused-value]
current_cluster ;
^
mulLibs.cc: In function ‘void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)’:
mulLibs.cc:1022:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( int i = 0 ; i < sss2.size() ; i++ ) {
~~^~~~~~~~~~~~~
mulLibs.cc:1023:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( int j = 0 ; j < harmonic_means.size() ; j++ ) {
~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-Mulcom/00new/Mulcom/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Mulcom)
Mulcom.Rcheck/Mulcom-Ex.timings
| name | user | system | elapsed | |
| MULCOM-class | 0.243 | 0.004 | 0.247 | |
| MULCOM_P | 0.210 | 0.012 | 0.222 | |
| mulCAND | 0.529 | 0.004 | 0.534 | |
| mulCalc | 0.211 | 0.004 | 0.216 | |
| mulDELTA | 0.206 | 0.000 | 0.206 | |
| mulDiff | 0.742 | 0.008 | 0.754 | |
| mulFSG | 0.637 | 0.004 | 0.642 | |
| mulIndex | 0.274 | 0.000 | 0.274 | |
| mulInt | 5.492 | 0.008 | 5.501 | |
| mulOpt | 4.473 | 0.008 | 4.482 | |
| mulOptPars | 0.732 | 0.000 | 0.732 | |
| mulOptPlot | 1.145 | 0.004 | 1.150 | |
| mulParOpt | 1.241 | 0.020 | 1.261 | |
| mulPerm | 0.681 | 0.004 | 0.685 | |
| mulPermC | 0.232 | 0.000 | 0.232 | |
| mulScores | 0.215 | 0.004 | 0.219 | |