Antonio Colaprico
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/MoonlightR |
| Branch: RELEASE_3_9 |
| Last Commit: 3bb845f |
| Last Changed Date: 2019-10-10 10:09:31 -0400 (Thu, 10 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:09:49 -0400 (Wed, 16 Oct 2019).
| Package 1036/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MoonlightR 1.10.1 Antonio Colaprico
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: MoonlightR |
| Version: 1.10.1 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MoonlightR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MoonlightR_1.10.1.tar.gz |
| StartedAt: 2019-10-16 03:19:05 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 03:26:09 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 424.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MoonlightR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MoonlightR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MoonlightR_1.10.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/MoonlightR.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MoonlightR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MoonlightR’ version ‘1.10.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MoonlightR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
URA 20.336 0.610 16.524
FEA 16.803 0.424 17.133
plotFEA 10.885 0.458 12.040
DPA 7.283 0.069 7.355
moonlight 5.342 0.027 5.368
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MoonlightR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL MoonlightR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘MoonlightR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MoonlightR)
MoonlightR.Rcheck/MoonlightR-Ex.timings
| name | user | system | elapsed | |
| DPA | 7.283 | 0.069 | 7.355 | |
| FEA | 16.803 | 0.424 | 17.133 | |
| GRN | 4.861 | 0.000 | 0.680 | |
| GSEA | 0.001 | 0.000 | 0.000 | |
| LPA | 0.002 | 0.004 | 0.003 | |
| PRA | 0.000 | 0.003 | 0.004 | |
| URA | 20.336 | 0.610 | 16.524 | |
| getDataGEO | 0.000 | 0.000 | 0.001 | |
| getDataTCGA | 0 | 0 | 0 | |
| moonlight | 5.342 | 0.027 | 5.368 | |
| plotCircos | 0.657 | 0.113 | 0.750 | |
| plotFEA | 10.885 | 0.458 | 12.040 | |
| plotNetworkHive | 0.095 | 0.020 | 0.139 | |
| plotURA | 0.089 | 0.013 | 0.124 | |