Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:32:21 -0400 (Wed, 16 Oct 2019).
Package 846/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IVAS 2.4.0 Seonggyun Han
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: IVAS |
Version: 2.4.0 |
Command: rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.4.0.tar.gz |
StartedAt: 2019-10-16 09:30:59 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 09:31:46 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 47.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: IVAS_2.4.0.zip |
PackageFileSize: 591.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.4.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'IVAS' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Note: next used in wrong context: no loop is visible ** help *** installing help indices converting help for package 'IVAS' finding HTML links ... done ASdb-class html CalSigSNP html IVAS-deprecated html IVAS-package html MsqtlFinder html RatioFromFPKM html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYPvP3o/R.INSTALL219c40fb352f/IVAS/man/RatioFromFPKM.Rd:46: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic Splicingfinder html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYPvP3o/R.INSTALL219c40fb352f/IVAS/man/Splicingfinder.Rd:41: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic calSignificant html chrseparate html finding level-2 HTML links ... done Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYPvP3o/R.INSTALL219c40fb352f/IVAS/man/chrseparate.Rd:31: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic findAlternative html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYPvP3o/R.INSTALL219c40fb352f/IVAS/man/findAlternative.Rd:44: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYPvP3o/R.INSTALL219c40fb352f/IVAS/man/findAlternative.Rd:45: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic findOversnp html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYPvP3o/R.INSTALL219c40fb352f/IVAS/man/findOversnp.Rd:29: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic sQTLsFinder html sampleexp html samplesnp html samplesnplocus html saveBplot html sqtlfinder html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'IVAS' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'IVAS' as IVAS_2.4.0.zip * DONE (IVAS)