Package: ISoLDE

Version: 1.12.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ISoLDE_1.12.0.tar.gz && rm -rf ISoLDE.buildbin-libdir && mkdir ISoLDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISoLDE.buildbin-libdir ISoLDE_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ISoLDE_1.12.0.zip && rm ISoLDE_1.12.0.tar.gz ISoLDE_1.12.0.zip

StartedAt: 2019-10-15 18:47:24 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 18:48:20 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 56.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ISoLDE_1.12.0.tar.gz && rm -rf ISoLDE.buildbin-libdir && mkdir ISoLDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISoLDE.buildbin-libdir ISoLDE_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ISoLDE_1.12.0.zip && rm ISoLDE_1.12.0.tar.gz ISoLDE_1.12.0.zip
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install for i386

* installing *source* package 'ISoLDE' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O3 -Wall  -std=gnu99 -mtune=generic -c Isolde.c -o Isolde.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o ISoLDE.dll tmp.def Isolde.o -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ISoLDE.buildbin-libdir/00LOCK-ISoLDE/00new/ISoLDE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ISoLDE'
    finding HTML links ... done
    ISoLDE-package                          html  
    filterT                                 html  
    filteredASRcounts                       html  
    isolde_test                             html  
    normASRcounts                           html  
    rawASRcounts                            html  
    readNormInput                           html  
    readRawInput                            html  
    readTarget                              html  
    target                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ISoLDE' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -std=gnu99 -mtune=generic -c Isolde.c -o Isolde.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o ISoLDE.dll tmp.def Isolde.o -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ISoLDE.buildbin-libdir/ISoLDE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ISoLDE' as ISoLDE_1.12.0.zip
* DONE (ISoLDE)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ISoLDE' successfully unpacked and MD5 sums checked