Stefano de Pretis
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/INSPEcT |
| Branch: RELEASE_3_9 |
| Last Commit: 0658703 |
| Last Changed Date: 2019-05-02 11:53:56 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:07:02 -0400 (Wed, 16 Oct 2019).
| Package 816/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| INSPEcT 1.14.0 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: INSPEcT |
| Version: 1.14.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings INSPEcT_1.14.0.tar.gz |
| StartedAt: 2019-10-16 02:32:16 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 02:47:55 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 938.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: INSPEcT.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings INSPEcT_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/INSPEcT.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘INSPEcT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘INSPEcT’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘INSPEcT’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
modelRates 164.982 0.456 165.461
makeSimDataset 72.305 3.603 69.355
INSPEcT_diffsteady-class 52.600 13.990 40.732
compareSteady 49.234 13.722 37.526
plotMA 48.536 14.191 36.969
rocThresholds 52.308 0.023 52.358
rocCurve 51.152 0.006 51.272
makeSimModel 46.477 0.172 46.651
quantifyExpressionsFromBAMs 39.999 0.258 41.477
newINSPEcT 30.951 5.459 20.930
processingDelay 24.082 4.303 23.621
quantifyExpressionsFromTrCounts 18.620 0.001 18.620
compareSteadyNoNascent 7.489 0.111 7.608
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘INSPEcT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
| name | user | system | elapsed | |
| AIC-INSPEcT-method | 0.383 | 0.016 | 0.492 | |
| Extract | 0.477 | 0.004 | 0.481 | |
| INSPEcT-shinyApps | 0 | 0 | 0 | |
| INSPEcT_diffsteady-class | 52.600 | 13.990 | 40.732 | |
| chisqmodel | 0.211 | 0.015 | 0.227 | |
| chisqtest | 0.145 | 0.005 | 0.150 | |
| combine | 0.438 | 0.026 | 0.465 | |
| compareSteady | 49.234 | 13.722 | 37.526 | |
| compareSteadyNoNascent | 7.489 | 0.111 | 7.608 | |
| geneClass | 0.319 | 0.000 | 0.320 | |
| getModel | 0.211 | 0.000 | 0.211 | |
| inHeatmap | 0.254 | 0.000 | 0.253 | |
| labeledSF | 0.274 | 0.000 | 0.274 | |
| logLik | 0.277 | 0.000 | 0.277 | |
| makeModelRates | 1.497 | 0.008 | 1.522 | |
| makeSimDataset | 72.305 | 3.603 | 69.355 | |
| makeSimModel | 46.477 | 0.172 | 46.651 | |
| modelRates | 164.982 | 0.456 | 165.461 | |
| modelSelection | 0.352 | 0.004 | 0.355 | |
| modelingParams | 0.526 | 0.003 | 0.530 | |
| nGenes | 0.268 | 0.004 | 0.272 | |
| nTpts | 0.263 | 0.003 | 0.266 | |
| newINSPEcT | 30.951 | 5.459 | 20.930 | |
| plotGene | 0.322 | 0.004 | 0.325 | |
| plotMA | 48.536 | 14.191 | 36.969 | |
| processingDelay | 24.082 | 4.303 | 23.621 | |
| quantifyExpressionsFromBAMs | 39.999 | 0.258 | 41.477 | |
| quantifyExpressionsFromTrCounts | 18.620 | 0.001 | 18.620 | |
| ratePvals | 0.183 | 0.000 | 0.182 | |
| ratesFirstGuess | 0.240 | 0.000 | 0.241 | |
| ratesFirstGuessVar | 0.277 | 0.000 | 0.276 | |
| removeModel | 0.343 | 0.000 | 0.344 | |
| rocCurve | 51.152 | 0.006 | 51.272 | |
| rocThresholds | 52.308 | 0.023 | 52.358 | |
| split | 0.369 | 0.000 | 0.369 | |
| tpts | 0.186 | 0.004 | 0.189 | |
| viewModelRates | 0.175 | 0.000 | 0.175 | |