Package: ExpressionView

Version: 1.36.0

Command: rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.36.0.tar.gz

StartedAt: 2019-10-16 09:10:49 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 09:11:52 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 63.4 seconds

RetCode: 0

Status:  OK

PackageFile: ExpressionView_1.36.0.zip

PackageFileSize: 1.765 MiB

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### Running command:
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###   rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.36.0.tar.gz
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install for i386

* installing *source* package 'ExpressionView' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c order.cpp -o order.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c orderclusters.cpp -o orderclusters.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ExpressionView.buildbin-libdir/00LOCK-ExpressionView/00new/ExpressionView/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust"
** help
*** installing help indices
  converting help for package 'ExpressionView'
    finding HTML links ... done
    ExportEV                                html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/ExportEV.Rd:25: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/ExportEV.Rd:28: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/ExportEV.Rd:67: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/ExportEV.Rd:73: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    ExpressionView-package                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/ExpressionView-package.Rd:17: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/ExpressionView-package.Rd:20: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/ExpressionView-package.Rd:44: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    LaunchEV                                html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/LaunchEV.Rd:19: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    OrderEV                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/OrderEV.Rd:20: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGeqJkL/R.INSTALL2100183278a2/ExpressionView/man/OrderEV.Rd:61: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ExpressionView' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c order.cpp -o order.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c orderclusters.cpp -o orderclusters.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ExpressionView' as ExpressionView_1.36.0.zip
* DONE (ExpressionView)